Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002136

Physical Location & Seq

Genomic Coordinates Reverse (-)

69633547 .. 69638677

Gene Structure 5131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00132630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1431 bp

ATGGTTCTGCTTGACAAAGAGAAAGAAGAGTATATATCTCTTTTGATGCAGCAAGTGGAGATGAAGAATGCTGCTCTCGTTATTGCACAGGCAGGTATCGAAGAAGAACGTGAGAAGGCAGCATTTTTATCTAGGAGGATTGAAGCTTTGGATCTCATTGAGAAAGAACAACTTCTAATGCAGGAAGAACTTGACAGGTACAAGGAAATGCTGGAGGACTCATCCAAGCATGAACTTTGCTTGAAACAGCAACTTTTGCAGATTGAAAGTGTTCTAGAAAGAGAACGTAGAGAAGTTAATGATGCGTTAGAGAGAGCAAATACTGAGTTGGCTGAGAAAATCAGTGAAGGAAGTGAAATTGAAATGGAATTGCATATATGGAAGTCCATCACTGAAAATTTAAGAACTGATCTTGAAGTAAGTCTGGGCATACGTAAAGAGTTAGAAGCTTCACTTCTTGCAGAGGTAGATGTTGGGGAGACCATCAAGCAAGAGAATAAAGGTCTTCTTCGTGTTCTAGAAGAGAAAGACAAAACAGTAGAAAACCTCCAGCAGCAGATCGTGTTACTGGAGCAGAAGCTCAAGAGAATAGATGCAGATGCAGAAAATGCTGGTTCTGCACAAATAGAGGCAGCAATGTCCTTGGAGAAACTCCAGAACAAGGTCAGCCAGCTAGAGCATGAATCACTGATGAGGGAGTTCACAGGTGTTTTGCTTGCCCAAATTGGCGCAGAGAGACTATTTGAGCATGAGAAGGAGAAACTTATCCAACTTGTAGAAGAGAAATACCAGAGAGTGACTGATCTCATGCAGCTTGTGGAGTCCTTGGAGAATAAGTTTAATTGCTCAGTAGTTTCTTTCTCTTCACAGCTAGCTGAAAAACAGGCAGAAATTAATCTCATCCATGAGGCTTGGGAGGACATCACTGCTGCACAGATTATGGCTGCAGTTGAAAATGAAGAAAAGAAGTCAGTGATTGCAGAACTTGAGGATGAAATCTGTAGTTTACAGACAAAGCTGGAATCACAGCAGAAATCCTTGTATGATTCACAACAACGAGCACTGGAGTTTGAAGCTGAATTGAAAACAAAAGAGCTGGAAGCGCAGAAATGGAGTGATCAAATGAAGACAAAGCTGAGAAATTCAGATGCCTTAATTGAAGAACTCAAGAGTGAAAGAAGAAATGTACTTGAAGATGTCATTAATTTGTCATCAGAAAGTATCAGTCAGTTCTCCAGTACAGACAAACAACTGAGGGGTATGTTGGAAGAGATGGTGCTCTCTTTTGAAAACCGAGGTCCAAAAATGGATTTGGAATGGACTGATGAGTTTATTGACCCAGAAAAAGAGAATGTTTCTACGCCTACCATGATGAAGAAATGTGAAGTAATTTCTGACTTAAGATCTCCATTGAGAGACATCAACACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

476

Amino Acids

54.98

Weight (kDa)

4.63

Isoelectric Point (pI)

50.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38062
fragaria_vesca	FvH4_1g19631 FvH4_1g19631 FvH4_1g19631 FvH4_2g11711 FvH4_2g11711 FvH4_2g11711
malus_domestica	MD01G1039400.v1.1 MD05G1047500.v1.1 MD10G1054400.v1.1
prunus_persica	Prupe.6G201700_v2.0.a1 Prupe.8G069900_v2.0.a1 Prupe.8G069900_v2.0.a1 Prupe.8G069900_v2.0.a1 Prupe.8G069900_v2.0.a1
pyrus_communis	pycom01g06710 pycom05g03950
rosa_chinensis	RchiOBHm_Chr2g0111201 RchiOBHm_Chr6g0261381 RchiOBHm_Chr6g0271001
rosa_laevigata	RLG00000002078 RLG00000013754 RLG00000017873
rosa_multiflora	Rmu_co8194982.1_g000001 Rmu_co8518461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132630 Rroxscaffold_3G00237190 Rroxscaffold_7G00197440
rosa_rugosa	Rorug02G0171500 Rorug06G0057600 Rorug07G0206900 Rorug07G0206900
rosa_samantha	Rh2AG224600 Rh2BG236400 Rh2CG227600 Rh2DG232200 Rh6AG177300 Rh6BG180700 Rh6CG176700 Rh6DG168900 Rh7BG338900 Rh7BG339000
rosa_wichuraiana	Rw2G017340 Rw6G015120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	83
AclWI	GGATC	1 cut(s)	159
AcsI	RAATTY	2 cut(s)	397, 1141
AfaI	GTAC	3 cut(s)	200, 1188, 1240
AfiI	CCNNNNNNNGG	1 cut(s)	661
AflII	CTTAAG	1 cut(s)	1399
Alw21I	GWGCWC	2 cut(s)	1063, 1281
Alw26I	GTCTC	3 cut(s)	473, 730, 1410
AlwI	GGATC	1 cut(s)	159
ApeKI	GCWGC	8 cut(s)	49, 71, 119, 553, 632, 811, 929, 944
ApoI	RAATTY	2 cut(s)	397, 1141
AseI	ATTAAT	2 cut(s)	894, 1203
Asp700I	GAANNNNTTC	2 cut(s)	171, 270
AspLEI	GCGC	2 cut(s)	731, 1105
AspS9I	GGNCC	1 cut(s)	1298
AsuNHI	GCTAGC	1 cut(s)	871
AvaII	GGWCC	1 cut(s)	1298
BbsI	GAAGAC	2 cut(s)	497, 1133
Bbv12I	GWGCWC	2 cut(s)	1063, 1281
BbvI	GCAGC	8 cut(s)	58, 61, 131, 565, 644, 823, 916, 931
BccI	CCATC	3 cut(s)	395, 491, 1267
BclI	TGATCA	1 cut(s)	1117
BcoDI	GTCTC	3 cut(s)	473, 730, 1410
BfaI	CTAG	5 cut(s)	132, 275, 518, 674, 872
BfmI	CTRYAG	2 cut(s)	945, 1000
BfrI	CTTAAG	1 cut(s)	1399
BfuAI	ACCTGC	1 cut(s)	83
BglII	AGATCT	1 cut(s)	1403
BisI	GCNGC	8 cut(s)	50, 72, 120, 554, 633, 812, 930, 945
BlsI	GCNGC	8 cut(s)	51, 73, 121, 555, 634, 813, 931, 946
Bme18I	GGWCC	1 cut(s)	1298
BmgT120I	GGNCC	1 cut(s)	1298
BmsI	GCATC	5 cut(s)	36, 292, 583, 589, 1138
BmtI	GCTAGC	1 cut(s)	875
BpiI	GAAGAC	2 cut(s)	497, 1133
BpmI	CTGGAG	6 cut(s)	233, 533, 590, 638, 1085, 1219
BpuEI	CTTGAG	3 cut(s)	566, 1007, 1151
BsaAI	YACGTR	1 cut(s)	434
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	3 cut(s)	642, 825, 1294
BsaXI	ACNNNNNCTCC	2 cut(s)	821, 851
Bsc4I	CCNNNNNNNGG	1 cut(s)	661
Bse1I	ACTGG	3 cut(s)	573, 1068, 1236
Bse3DI	GCAATG	1 cut(s)	642
BseDI	CCNNGG	3 cut(s)	642, 825, 1294
BseGI	GGATG	3 cut(s)	221, 900, 997
BseLI	CCNNNNNNNGG	1 cut(s)	661
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	5 cut(s)	315, 324, 861, 1127, 1244
BseNI	ACTGG	3 cut(s)	573, 1068, 1236
BseXI	GCAGC	8 cut(s)	58, 61, 131, 565, 644, 823, 916, 931
BsgI	GTGCAG	2 cut(s)	603, 915
BsiHKAI	GWGCWC	2 cut(s)	1063, 1281
BslI	CCNNNNNNNGG	1 cut(s)	661
BsmAI	GTCTC	3 cut(s)	473, 730, 1410
BsmI	GAATGC	1 cut(s)	73
Bso31I	GGTCTC	1 cut(s)	473
Bsp1286I	GDGCHC	2 cut(s)	1063, 1281
Bsp143I	GATC	6 cut(s)	151, 409, 558, 802, 1117, 1403
BspCNI	CTCAG	5 cut(s)	316, 325, 860, 1128, 1245
BspMAI	CTGCAG	1 cut(s)	949
BspMI	ACCTGC	1 cut(s)	83
BspOI	GCTAGC	1 cut(s)	875
BspPI	GGATC	1 cut(s)	159
BspTI	CTTAAG	1 cut(s)	1399
BspTNI	GGTCTC	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	642
BsrI	ACTGG	3 cut(s)	573, 1068, 1236
BssECI	CCNNGG	3 cut(s)	642, 825, 1294
BssMI	GATC	6 cut(s)	151, 409, 558, 802, 1117, 1403
BssT1I	CCWWGG	2 cut(s)	642, 825
Bst4CI	ACNGT	1 cut(s)	538
Bst6I	CTCTTC	5 cut(s)	21, 516, 774, 868, 1263
BstAFI	CTTAAG	1 cut(s)	1399
BstAPI	GCANNNNNTGC	2 cut(s)	256, 608
BstBAI	YACGTR	1 cut(s)	434
BstC8I	GCNNGC	3 cut(s)	671, 717, 873
BstDEI	CTNAG	6 cut(s)	324, 333, 847, 1136, 1253, 1428
BstF5I	GGATG	3 cut(s)	221, 900, 997
BstHHI	GCGC	2 cut(s)	731, 1105
BstKTI	GATC	6 cut(s)	154, 412, 561, 805, 1120, 1406
BstMAI	GTCTC	3 cut(s)	473, 730, 1410
BstMBI	GATC	6 cut(s)	151, 409, 558, 802, 1117, 1403
BstMWI	GCNNNNNNNGC	4 cut(s)	256, 608, 617, 1102
BstSFI	CTRYAG	2 cut(s)	945, 1000
BstSNI	TACGTA	1 cut(s)	434
BstV1I	GCAGC	8 cut(s)	58, 61, 131, 565, 644, 823, 916, 931
BstV2I	GAAGAC	2 cut(s)	497, 1133
BstX2I	RGATCY	2 cut(s)	151, 1403
BstYI	RGATCY	2 cut(s)	151, 1403
BtsCI	GGATG	3 cut(s)	221, 900, 997
BtsI	GCAGTG	1 cut(s)	924
BtsIMutI	CAGTG	6 cut(s)	349, 390, 686, 924, 978, 1061
BveI	ACCTGC	1 cut(s)	83
Cac8I	GCNNGC	3 cut(s)	671, 717, 873
CfoI	GCGC	2 cut(s)	731, 1105
Cfr13I	GGNCC	1 cut(s)	1298
Csp6I	GTAC	3 cut(s)	199, 1187, 1239
CviAII	CATG	6 cut(s)	230, 680, 749, 808, 905, 1369
CviQI	GTAC	3 cut(s)	199, 1187, 1239
DdeI	CTNAG	6 cut(s)	324, 333, 847, 1136, 1253, 1428
DpnI	GATC	6 cut(s)	153, 411, 560, 804, 1119, 1405
DpnII	GATC	6 cut(s)	151, 409, 558, 802, 1117, 1403
Eam1104I	CTCTTC	5 cut(s)	21, 516, 774, 868, 1263
EarI	CTCTTC	5 cut(s)	21, 516, 774, 868, 1263
Eco105I	TACGTA	1 cut(s)	434
Eco130I	CCWWGG	2 cut(s)	642, 825
Eco31I	GGTCTC	1 cut(s)	473
Eco47I	GGWCC	1 cut(s)	1298
EcoT14I	CCWWGG	2 cut(s)	642, 825
ErhI	CCWWGG	2 cut(s)	642, 825
FaeI	CATG	6 cut(s)	233, 683, 752, 811, 908, 1372
FalI	AAGNNNNNCTT	6 cut(s)	156, 188, 438, 470, 492, 524
FatI	CATG	6 cut(s)	229, 679, 748, 807, 904, 1368
FbaI	TGATCA	1 cut(s)	1117
Fnu4HI	GCNGC	8 cut(s)	50, 72, 120, 554, 633, 812, 930, 945
FokI	GGATG	3 cut(s)	208, 887, 1004
Fsp4HI	GCNGC	8 cut(s)	50, 72, 120, 554, 633, 812, 930, 945
FspBI	CTAG	5 cut(s)	132, 275, 518, 674, 872
GlaI	GCGC	2 cut(s)	730, 1104
GluI	GCNGC	8 cut(s)	50, 72, 120, 554, 633, 812, 930, 945
GsuI	CTGGAG	6 cut(s)	233, 533, 590, 638, 1085, 1219
HhaI	GCGC	2 cut(s)	731, 1105
Hin1II	CATG	6 cut(s)	233, 683, 752, 811, 908, 1372
Hin6I	GCGC	2 cut(s)	729, 1103
HinP1I	GCGC	2 cut(s)	729, 1103
HindIII	AAGCTT	2 cut(s)	144, 447
HinfI	GANTC	5 cut(s)	218, 683, 821, 1022, 1046
Hpy166II	GTNNAC	2 cut(s)	702, 1007
Hpy188I	TCNGA	3 cut(s)	1147, 1216, 1396
Hpy188III	TCNNGA	6 cut(s)	275, 413, 518, 583, 655, 1168
Hpy8I	GTNNAC	2 cut(s)	702, 1007
HpyAV	CCTTC	3 cut(s)	109, 341, 748
HpyCH4III	ACNGT	1 cut(s)	538
HpyCH4IV	ACGT	3 cut(s)	109, 286, 433
HpyF10VI	GCNNNNNNNGC	4 cut(s)	256, 608, 617, 1102
HpyF3I	CTNAG	6 cut(s)	324, 333, 847, 1136, 1253, 1428
HpySE526I	ACGT	3 cut(s)	109, 286, 433
Hsp92II	CATG	6 cut(s)	233, 683, 752, 811, 908, 1372
HspAI	GCGC	2 cut(s)	729, 1103
Ksp22I	TGATCA	1 cut(s)	1117
Kzo9I	GATC	6 cut(s)	151, 409, 558, 802, 1117, 1403
LmnI	GCTCC	1 cut(s)	571
Lsp1109I	GCAGC	8 cut(s)	58, 61, 131, 565, 644, 823, 916, 931
LweI	GCATC	5 cut(s)	36, 292, 583, 589, 1138
MaeI	CTAG	5 cut(s)	132, 275, 518, 674, 872
MaeII	ACGT	3 cut(s)	109, 286, 433
MaeIII	GTNAC	2 cut(s)	564, 796
MalI	GATC	6 cut(s)	153, 411, 560, 804, 1119, 1405
MboI	GATC	6 cut(s)	151, 409, 558, 802, 1117, 1403
MflI	RGATCY	2 cut(s)	151, 1403
MhlI	GDGCHC	2 cut(s)	1063, 1281
MlyI	GAGTC	2 cut(s)	212, 830
MmeI	TCCRAC	2 cut(s)	793, 1245
MroXI	GAANNNNTTC	2 cut(s)	171, 270
MseI	TTAA	7 cut(s)	297, 401, 840, 894, 1154, 1203, 1400
MspCI	CTTAAG	1 cut(s)	1399
Mva1269I	GAATGC	1 cut(s)	73
MwoI	GCNNNNNNNGC	4 cut(s)	256, 608, 617, 1102
NdeII	GATC	6 cut(s)	151, 409, 558, 802, 1117, 1403
NheI	GCTAGC	1 cut(s)	871
NlaIII	CATG	6 cut(s)	233, 683, 752, 811, 908, 1372
NmuCI	GTSAC	1 cut(s)	796
PctI	GAATGC	1 cut(s)	73
PdmI	GAANNNNTTC	2 cut(s)	171, 270
PfeI	GAWTC	3 cut(s)	683, 1022, 1046
PkrI	GCNGC	8 cut(s)	51, 73, 121, 555, 634, 813, 931, 946
PleI	GAGTC	2 cut(s)	212, 829
PpsI	GAGTC	2 cut(s)	212, 829
Ppu21I	YACGTR	1 cut(s)	434
PshBI	ATTAAT	2 cut(s)	894, 1203
PspPI	GGNCC	1 cut(s)	1298
PstI	CTGCAG	1 cut(s)	949
PsuI	RGATCY	2 cut(s)	151, 1403
RsaI	GTAC	3 cut(s)	200, 1188, 1240
RsaNI	GTAC	3 cut(s)	199, 1187, 1239
SaqAI	TTAA	7 cut(s)	297, 401, 840, 894, 1154, 1203, 1400
SatI	GCNGC	8 cut(s)	50, 72, 120, 554, 633, 812, 930, 945
Sau3AI	GATC	6 cut(s)	151, 409, 558, 802, 1117, 1403
Sau96I	GGNCC	1 cut(s)	1298
SchI	GAGTC	2 cut(s)	212, 830
SduI	GDGCHC	2 cut(s)	1063, 1281
SfaNI	GCATC	5 cut(s)	36, 292, 583, 589, 1138
SfcI	CTRYAG	2 cut(s)	945, 1000
SinI	GGWCC	1 cut(s)	1298
SmlI	CTYRAG	4 cut(s)	581, 986, 1166, 1399
SmoI	CTYRAG	4 cut(s)	581, 986, 1166, 1399
SnaBI	TACGTA	1 cut(s)	434
SspMI	CTAG	5 cut(s)	132, 275, 518, 674, 872
StyI	CCWWGG	2 cut(s)	642, 825
TaaI	ACNGT	1 cut(s)	538
TaiI	ACGT	3 cut(s)	112, 289, 436
TaqI	TCGA	1 cut(s)	99
TatI	WGTACW	2 cut(s)	1186, 1238
TfiI	GAWTC	3 cut(s)	683, 1022, 1046
Tru1I	TTAA	7 cut(s)	297, 401, 840, 894, 1154, 1203, 1400
Tru9I	TTAA	7 cut(s)	297, 401, 840, 894, 1154, 1203, 1400
TscAI	CASTG	6 cut(s)	349, 397, 693, 931, 978, 1068
TseFI	GTSAC	1 cut(s)	796
TseI	GCWGC	8 cut(s)	49, 71, 119, 553, 632, 811, 929, 944
Tsp45I	GTSAC	1 cut(s)	796
TspDTI	ATGAA	7 cut(s)	77, 246, 696, 972, 1008, 1139, 1388
TspRI	CASTG	6 cut(s)	349, 397, 693, 931, 978, 1068
Vha464I	CTTAAG	1 cut(s)	1399
VpaK11BI	GGWCC	1 cut(s)	1298
VspI	ATTAAT	2 cut(s)	894, 1203
XapI	RAATTY	2 cut(s)	397, 1141
XbaI	TCTAGA	2 cut(s)	274, 517
XmnI	GAANNNNTTC	2 cut(s)	171, 270
XspI	CTAG	5 cut(s)	132, 275, 518, 674, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.