RLG00000002632

Beta-L-arabinofuranosidase, GH127

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004716
Physical Location & Seq
Forward (+)
37319929 .. 37322631
2703 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002632

Sequence Viewer

Length: 1284 bp
ATGGGGATTTTCTTTGTGGACATTGTTAACTCTTCTCACAGCTATGCAACAGGAGGGACATCAGTCCACGAGTTTTGGGAAGACCCTAAAAGATTGGCGACCACTCTACAATCAGAGAATCAGGAATCGTGCACAACTTATAACATGCTGAAGATATTCTTTTTGCAATTATCAATCAATGAAAGACCCTGGCTGGTTTCTCACAACCTGGTTAGATGGACCAAAGAAACAGCGTATGCGGATTATTATGAGCGAGCTCTAACAAATGGTGTGCTAGGCATTCAAAGAGGAACTGAGCCTGGAGTTATGATCTACATGCTCCCACTAGGCAATGGACAGTCCAAGGCCAAGAGCATTCATGGTTGGGGATCACCGTTTGGCCATTTCTGGTGCTGCTATGGCACTGATTCCATGTATTTTGAAGAGGAAGAAGAAACTCCTGGTCTTTACATTATCCAGTATATATCAAGCTTGCTTGATTGGAAATCTAGACAATTCGTACTTAATCAGACAGTTGATAACATCAATTCCTGGGATCCTTACCTTAGAATGACGTTAGCATTTTCTTCAACAAAGGTACAGATCACATTGACTATGGCCTCAACATTAACACTCTCGGGACAAGGCAAATCATCTACCTTGAACTTGCGAATGCCAATTTGGGCTGATTCAGATGGTGCAAAGGCCGCATTGAATAGTCAAAGTCTGCATCCATCAAGCCATGGTAACACAGTAACTCTTCAGCTACCCATTAATGACCGGGTAGAGTATGCTTCACTGCCAGCAATTCTTTATGATCCAATTCTGCTTGCGGCTCATACCAGTGAGTATGAAATCTCAACTTTTGCCTTGGCCAATTTAAATCAGTCGATTGAACTAGACAACTTTCCAGAAGTAGGCACTGCTACTGCTGTTCATGCCACTTTCAGACTCATTTTATATGACTTGTCTACAAAAGTTTCCAAAGCGCAAGATGCTATCGGAAAATCAGTCATGCTAGAACTGTTTGGATGGAATGACTGCCTTGCCTCCTTAGAGTCAGAAAGGGACAAGGGTTGTTTTATGTATAGCTCGGAGTTGGAGGTTGATGCAACCTTGAAGCTCGGCGGCAGTTTAGAATTGTCAAACTACAGATTCAAACAGGCAGCCAGCTTTTTAATGAAGAGCGGAAGCTTTGTTGCCCAAGGGAAGCATAGGAATTTTCTTCTACAACCATTATCAAGCTTCATGGATGAATTTTATACTGCCTATCTCAACATTACAACTGTTTTAGTTCGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AbfB Glyco_hydro_127

Protein Analysis

428

Amino Acids

47.84

Weight (kDa)

5.33

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-AFase-like_GH127_cat PF07944 4 - 135 2.3e-26 Beta-L-arabinofuranosidase, GH127 catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 141
AccBSI CCGCTC 1 cut(s) 1167
AccI GTMKAC 1 cut(s) 950
AciI CCGC 5 cut(s) 239, 687, 812, 1107, 1167
AclWI GGATC 4 cut(s) 376, 530, 543, 791
AcoI YGGCCR 2 cut(s) 379, 852
AcsI RAATTY 2 cut(s) 1198, 1235
AcuI CTGAAG 2 cut(s) 170, 725
AfaI GTAC 2 cut(s) 501, 579
AfiI CCNNNNNNNGG 1 cut(s) 896
AgsI TTSAA 8 cut(s) 284, 422, 570, 643, 694, 875, 1099, 1138
AjnI CCWGG 5 cut(s) 188, 207, 298, 439, 530
AjuI GAANNNNNNNTTGG 2 cut(s) 643, 675
AluBI AGCT 9 cut(s) 42, 257, 471, 745, 1071, 1102, 1152, 1173, 1224
AluI AGCT 9 cut(s) 42, 257, 471, 745, 1071, 1102, 1152, 1173, 1224
Alw21I GWGCWC 2 cut(s) 134, 259
Alw44I GTGCAC 1 cut(s) 130
AlwI GGATC 4 cut(s) 376, 530, 543, 791
Ama87I CYCGRG 1 cut(s) 616
AoxI GGCC 5 cut(s) 345, 379, 597, 684, 852
ApaLI GTGCAC 1 cut(s) 130
ApeKI GCWGC 2 cut(s) 393, 1145
ApoI RAATTY 2 cut(s) 1198, 1235
AseI ATTAAT 1 cut(s) 753
Asp700I GAANNNNTTC 1 cut(s) 155
AspLEI GCGC 1 cut(s) 970
AspS9I GGNCC 1 cut(s) 219
AsuC2I CCSGG 1 cut(s) 761
AsuHPI GGTGA 1 cut(s) 363
AvaI CYCGRG 1 cut(s) 616
AvaII GGWCC 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 134
BalI TGGCCA 2 cut(s) 381, 854
BamHI GGATCC 1 cut(s) 535
BanII GRGCYC 1 cut(s) 259
BauI CACGAG 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 2 cut(s) 134, 259
BbvI GCAGC 2 cut(s) 380, 1157
BccI CCATC 4 cut(s) 210, 668, 721, 1005
BciT130I CCWGG 5 cut(s) 190, 209, 300, 441, 532
BcnI CCSGG 1 cut(s) 761
BfaI CTAG 5 cut(s) 275, 326, 489, 878, 998
BfmI CTRYAG 1 cut(s) 1129
BisI GCNGC 5 cut(s) 394, 687, 813, 1108, 1146
BlsI GCNGC 5 cut(s) 395, 688, 814, 1109, 1147
Bme1390I CCNGG 6 cut(s) 190, 209, 300, 441, 532, 761
Bme18I GGWCC 1 cut(s) 219
BmeT110I CYCGRG 1 cut(s) 616
BmgT120I GGNCC 1 cut(s) 219
BmiI GGNNCC 1 cut(s) 537
BmrFI CCNGG 6 cut(s) 190, 209, 300, 441, 532, 761
BmsI GCATC 3 cut(s) 718, 964, 1078
BoxI GACNNNNGTC 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 87
BpmI CTGGAG 1 cut(s) 321
BpuMI CCSGG 1 cut(s) 761
BsaJI CCNNGG 6 cut(s) 188, 342, 531, 721, 849, 1183
Bsc4I CCNNNNNNNGG 1 cut(s) 896
Bse1I ACTGG 2 cut(s) 457, 822
Bse3DI GCAATG 1 cut(s) 337
BseBI CCWGG 5 cut(s) 190, 209, 300, 441, 532
BseDI CCNNGG 6 cut(s) 188, 342, 531, 721, 849, 1183
BseGI GGATG 3 cut(s) 709, 1016, 1237
BseLI CCNNNNNNNGG 1 cut(s) 896
BseMI GCAATG 1 cut(s) 337
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 2 cut(s) 457, 822
BseSI GKGCMC 1 cut(s) 134
BseXI GCAGC 2 cut(s) 380, 1157
BshFI GGCC 5 cut(s) 347, 381, 599, 686, 854
BsiHKAI GWGCWC 2 cut(s) 134, 259
BsiHKCI CYCGRG 1 cut(s) 616
BsiSI CCGG 1 cut(s) 760
BslFI GGGAC 3 cut(s) 70, 633, 1061
BslI CCNNNNNNNGG 1 cut(s) 896
BsmFI GGGAC 3 cut(s) 70, 633, 1061
BsmI GAATGC 3 cut(s) 279, 354, 657
BsnI GGCC 5 cut(s) 347, 381, 599, 686, 854
BsoBI CYCGRG 1 cut(s) 616
Bsp1286I GDGCHC 2 cut(s) 134, 259
Bsp143I GATC 5 cut(s) 309, 368, 535, 582, 796
Bsp19I CCATGG 1 cut(s) 721
BspACI CCGC 5 cut(s) 239, 687, 812, 1107, 1167
BspANI GGCC 5 cut(s) 347, 381, 599, 686, 854
BspCNI CTCAG 1 cut(s) 286
BspLI GGNNCC 1 cut(s) 537
BspPI GGATC 4 cut(s) 376, 530, 543, 791
BspQI GCTCTTC 1 cut(s) 1157
BsrBI CCGCTC 1 cut(s) 1167
BsrDI GCAATG 1 cut(s) 337
BsrI ACTGG 2 cut(s) 457, 822
BssECI CCNNGG 6 cut(s) 188, 342, 531, 721, 849, 1183
BssMI GATC 5 cut(s) 309, 368, 535, 582, 796
BssSI CACGAG 1 cut(s) 68
BssT1I CCWWGG 4 cut(s) 342, 721, 849, 1183
Bst2BI CACGAG 1 cut(s) 68
Bst2UI CCWGG 5 cut(s) 190, 209, 300, 441, 532
Bst4CI ACNGT 6 cut(s) 339, 375, 514, 733, 1005, 1267
Bst6I CTCTTC 4 cut(s) 37, 417, 744, 1157
BstC8I GCNNGC 5 cut(s) 255, 473, 783, 810, 1150
BstDEI CTNAG 3 cut(s) 294, 545, 1033
BstDSI CCRYGG 1 cut(s) 721
BstF5I GGATG 3 cut(s) 709, 1016, 1237
BstHHI GCGC 1 cut(s) 970
BstKTI GATC 5 cut(s) 312, 371, 538, 585, 799
BstMBI GATC 5 cut(s) 309, 368, 535, 582, 796
BstMWI GCNNNNNNNGC 4 cut(s) 399, 686, 917, 974
BstNI CCWGG 5 cut(s) 190, 209, 300, 441, 532
BstNSI RCATGY 2 cut(s) 148, 319
BstPAI GACNNNNGTC 1 cut(s) 62
BstSCI CCNGG 6 cut(s) 188, 207, 298, 439, 530, 759
BstSFI CTRYAG 1 cut(s) 1129
BstSLI GKGCMC 1 cut(s) 134
BstV1I GCAGC 2 cut(s) 380, 1157
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 535
BstYI RGATCY 1 cut(s) 535
BsuRI GGCC 5 cut(s) 347, 381, 599, 686, 854
BtgI CCRYGG 1 cut(s) 721
BtsCI GGATG 3 cut(s) 709, 1016, 1237
BtsI GCAGTG 2 cut(s) 776, 900
BtsIMutI CAGTG 4 cut(s) 402, 776, 829, 900
Cac8I GCNNGC 5 cut(s) 255, 473, 783, 810, 1150
CfoI GCGC 1 cut(s) 970
Cfr13I GGNCC 1 cut(s) 219
CsiI ACCWGGT 1 cut(s) 207
Csp6I GTAC 2 cut(s) 500, 578
CspCI CAANNNNNGTGG 2 cut(s) 56, 91
CviAII CATG 9 cut(s) 145, 316, 359, 412, 722, 917, 994, 1228, 1281
CviQI GTAC 2 cut(s) 500, 578
DdeI CTNAG 3 cut(s) 294, 545, 1033
DpnI GATC 5 cut(s) 311, 370, 537, 584, 798
DpnII GATC 5 cut(s) 309, 368, 535, 582, 796
DraI TTTAAA 1 cut(s) 861
EaeI YGGCCR 2 cut(s) 379, 852
Eam1104I CTCTTC 4 cut(s) 37, 417, 744, 1157
EarI CTCTTC 4 cut(s) 37, 417, 744, 1157
Ecl136II GAGCTC 1 cut(s) 257
Eco130I CCWWGG 4 cut(s) 342, 721, 849, 1183
Eco24I GRGCYC 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 219
Eco53kI GAGCTC 1 cut(s) 257
Eco57I CTGAAG 2 cut(s) 170, 725
Eco88I CYCGRG 1 cut(s) 616
EcoICRI GAGCTC 1 cut(s) 257
EcoRII CCWGG 5 cut(s) 188, 207, 298, 439, 530
EcoT14I CCWWGG 4 cut(s) 342, 721, 849, 1183
EcoT38I GRGCYC 1 cut(s) 259
ErhI CCWWGG 4 cut(s) 342, 721, 849, 1183
FaeI CATG 9 cut(s) 148, 319, 362, 415, 725, 920, 997, 1231, 1284
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FaqI GGGAC 3 cut(s) 70, 633, 1061
FatI CATG 9 cut(s) 144, 315, 358, 411, 721, 916, 993, 1227, 1280
FblI GTMKAC 1 cut(s) 950
Fnu4HI GCNGC 5 cut(s) 394, 687, 813, 1108, 1146
FokI GGATG 3 cut(s) 696, 1023, 1244
FriOI GRGCYC 1 cut(s) 259
Fsp4HI GCNGC 5 cut(s) 394, 687, 813, 1108, 1146
FspBI CTAG 5 cut(s) 275, 326, 489, 878, 998
GlaI GCGC 1 cut(s) 969
GluI GCNGC 5 cut(s) 394, 687, 813, 1108, 1146
GsuI CTGGAG 1 cut(s) 321
HaeIII GGCC 5 cut(s) 347, 381, 599, 686, 854
HapII CCGG 1 cut(s) 760
HhaI GCGC 1 cut(s) 970
Hin1II CATG 9 cut(s) 148, 319, 362, 415, 725, 920, 997, 1231, 1284
Hin6I GCGC 1 cut(s) 968
HinP1I GCGC 1 cut(s) 968
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HindIII AAGCTT 3 cut(s) 469, 1171, 1222
HinfI GANTC 7 cut(s) 118, 125, 407, 668, 930, 1037, 1134
HpaI GTTAAC 1 cut(s) 28
HpaII CCGG 1 cut(s) 760
HphI GGTGA 1 cut(s) 363
Hpy166II GTNNAC 5 cut(s) 19, 28, 67, 132, 951
Hpy188I TCNGA 7 cut(s) 115, 510, 673, 929, 983, 1042, 1075
Hpy188III TCNNGA 4 cut(s) 122, 489, 618, 890
Hpy8I GTNNAC 5 cut(s) 19, 28, 67, 132, 951
HpyCH4III ACNGT 6 cut(s) 339, 375, 514, 733, 1005, 1267
HpyCH4IV ACGT 1 cut(s) 554
HpyCH4V TGCA 6 cut(s) 47, 132, 166, 680, 709, 1091
HpyF10VI GCNNNNNNNGC 4 cut(s) 399, 686, 917, 974
HpyF3I CTNAG 3 cut(s) 294, 545, 1033
HpySE526I ACGT 1 cut(s) 554
Hsp92II CATG 9 cut(s) 148, 319, 362, 415, 725, 920, 997, 1231, 1284
HspAI GCGC 1 cut(s) 968
KspAI GTTAAC 1 cut(s) 28
Kzo9I GATC 5 cut(s) 309, 368, 535, 582, 796
LguI GCTCTTC 1 cut(s) 1157
LmnI GCTCC 1 cut(s) 324
Lsp1109I GCAGC 2 cut(s) 380, 1157
LweI GCATC 3 cut(s) 718, 964, 1078
MabI ACCWGGT 1 cut(s) 207
MaeI CTAG 5 cut(s) 275, 326, 489, 878, 998
MaeII ACGT 1 cut(s) 554
MaeIII GTNAC 2 cut(s) 725, 733
MalI GATC 5 cut(s) 311, 370, 537, 584, 798
MbiI CCGCTC 1 cut(s) 1167
MboI GATC 5 cut(s) 309, 368, 535, 582, 796
MflI RGATCY 1 cut(s) 535
MhlI GDGCHC 2 cut(s) 134, 259
MlsI TGGCCA 2 cut(s) 381, 854
MluNI TGGCCA 2 cut(s) 381, 854
MlyI GAGTC 2 cut(s) 924, 1046
MmeI TCCRAC 1 cut(s) 1059
MnlI CCTC 6 cut(s) 47, 281, 418, 610, 1039, 1075
Mox20I TGGCCA 2 cut(s) 381, 854
MroXI GAANNNNTTC 1 cut(s) 155
MscI TGGCCA 2 cut(s) 381, 854
MseI TTAA 6 cut(s) 27, 504, 608, 753, 860, 1157
MslI CAYNNNNRTG 2 cut(s) 42, 822
Msp20I TGGCCA 2 cut(s) 381, 854
MspI CCGG 1 cut(s) 760
MspR9I CCNGG 6 cut(s) 190, 209, 300, 441, 532, 761
Mva1269I GAATGC 3 cut(s) 279, 354, 657
MvaI CCWGG 5 cut(s) 190, 209, 300, 441, 532
MwoI GCNNNNNNNGC 4 cut(s) 399, 686, 917, 974
NciI CCSGG 1 cut(s) 761
NcoI CCATGG 1 cut(s) 721
NdeII GATC 5 cut(s) 309, 368, 535, 582, 796
NlaIII CATG 9 cut(s) 148, 319, 362, 415, 725, 920, 997, 1231, 1284
NlaIV GGNNCC 1 cut(s) 537
NmeAIII GCCGAG 1 cut(s) 1083
NspI RCATGY 2 cut(s) 148, 319
PciSI GCTCTTC 1 cut(s) 1157
PctI GAATGC 3 cut(s) 279, 354, 657
PdmI GAANNNNTTC 1 cut(s) 155
PfeI GAWTC 5 cut(s) 118, 125, 407, 668, 1134
PkrI GCNGC 5 cut(s) 395, 688, 814, 1109, 1147
PleI GAGTC 2 cut(s) 924, 1045
PpsI GAGTC 2 cut(s) 924, 1045
PshAI GACNNNNGTC 1 cut(s) 62
PshBI ATTAAT 1 cut(s) 753
PsiI TTATAA 1 cut(s) 141
Psp124BI GAGCTC 1 cut(s) 259
Psp6I CCWGG 5 cut(s) 188, 207, 298, 439, 530
PspGI CCWGG 5 cut(s) 188, 207, 298, 439, 530
PspN4I GGNNCC 1 cut(s) 537
PspPI GGNCC 1 cut(s) 219
PsuI RGATCY 1 cut(s) 535
RsaI GTAC 2 cut(s) 501, 579
RsaNI GTAC 2 cut(s) 500, 578
RseI CAYNNNNRTG 2 cut(s) 42, 822
SacI GAGCTC 1 cut(s) 259
SapI GCTCTTC 1 cut(s) 1157
SaqAI TTAA 6 cut(s) 27, 504, 608, 753, 860, 1157
SatI GCNGC 5 cut(s) 394, 687, 813, 1108, 1146
Sau3AI GATC 5 cut(s) 309, 368, 535, 582, 796
Sau96I GGNCC 1 cut(s) 219
SchI GAGTC 2 cut(s) 924, 1046
ScrFI CCNGG 6 cut(s) 190, 209, 300, 441, 532, 761
SduI GDGCHC 2 cut(s) 134, 259
SexAI ACCWGGT 1 cut(s) 207
SfaNI GCATC 3 cut(s) 718, 964, 1078
SfcI CTRYAG 1 cut(s) 1129
SinI GGWCC 1 cut(s) 219
SmiI ATTTAAAT 1 cut(s) 861
SmiMI CAYNNNNRTG 2 cut(s) 42, 822
SsiI CCGC 5 cut(s) 239, 687, 812, 1107, 1167
SspMI CTAG 5 cut(s) 275, 326, 489, 878, 998
SstI GAGCTC 1 cut(s) 259
StyD4I CCNGG 6 cut(s) 188, 207, 298, 439, 530, 759
StyI CCWWGG 4 cut(s) 342, 721, 849, 1183
SwaI ATTTAAAT 1 cut(s) 861
TaaI ACNGT 6 cut(s) 339, 375, 514, 733, 1005, 1267
TaiI ACGT 1 cut(s) 557
TaqI TCGA 2 cut(s) 869, 1276
TauI GCSGC 3 cut(s) 689, 815, 1110
TfiI GAWTC 5 cut(s) 118, 125, 407, 668, 1134
Tru1I TTAA 6 cut(s) 27, 504, 608, 753, 860, 1157
Tru9I TTAA 6 cut(s) 27, 504, 608, 753, 860, 1157
TscAI CASTG 4 cut(s) 409, 783, 829, 907
TseI GCWGC 2 cut(s) 393, 1145
TspDTI ATGAA 7 cut(s) 195, 347, 846, 905, 1175, 1216, 1248
TspRI CASTG 4 cut(s) 409, 783, 829, 907
VneI GTGCAC 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 219
VspI ATTAAT 1 cut(s) 753
XapI RAATTY 2 cut(s) 1198, 1235
XbaI TCTAGA 1 cut(s) 488
XceI RCATGY 2 cut(s) 148, 319
XmiI GTMKAC 1 cut(s) 950
XmnI GAANNNNTTC 1 cut(s) 155
XspI CTAG 5 cut(s) 275, 326, 489, 878, 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.