Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004716

Physical Location & Seq

Genomic Coordinates Forward (+)

83418990 .. 83425283

Gene Structure 6294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG542300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2604 bp

ATGGAAATGAAGGGTTTTGGGTCGATTGATATGTCATCTGTGTTTGTGATTTTTCTGTTATGTGTATGTGGATGTGGTTTGGCTGAGGGTAAGGAGTGTACAAACACTGTTCATCCTGGGATGGCATCACATACTTTACGGTTTGCGCTTTTATCTTCCAATAATGAAAGTTTGAAGAAGGAGATGTTCTCACACTACCACGTGACACCAAGTGATGATATTGCTTGGTTGAATTTGCTCCCAAGAAAGATATTGAAGGAGGAAGATGAATATGAGTGGTCAGTGCTGTACCGGAAGATGAAAATCTCCGCTGGTGGTTCTGAGGCCCCCGGAGGTTTTCTCAAGGAAGTGTCATTGCATGATGTGAGGTTGGATCCAACTTCACAACATGGGAAGGCACAGCAAACAAATCTAGAGTACCTGTTGATGTTGGATTCGGATAGTTTAGTTTGGAGCTTTCGAAAGACAGCTGGTTTAGAAACCCCTGGGGCACCATATGATGCAGAAGGTTCATGGGAGGCATCGACTGGTGAACTGCGGGGTCATTTTGTAGCAATGATGTGGGCTAGCACTCATAATGATACTCTCAAAGAGAAGATGTCTGGGATTGTGTCAAGTCTCTCTCTTTGTCAGAAGGAAATTGGCAGTGGATATCTTTCGGCTTTTCCAACTGAGGAATTTGATCGCTTTGAAGCTATTACACCTGTCTGGGCTCCTTATTATACCATTCACAAGATGTTGGCAGGCCTGTTTGATCAGTATACACTTGCTGGTAGTGATCAAGCTTTTGATATGATGAAATGGATGGTTGATTACTTTTACAAACGTGTTCAGAATGTGATATCGAAGTACAGTATAGCACACCATTATCTGTCACAAAATGAAGAAACTGGTGGCATGAATGACATTCTTTATAAGTTATATGCTATCACGGGAGATACAAAGCATTTATTGTTGGCTCATCTTTTTGACAAACCCTGCTTTCTAGGAGTGTTGGCAGTGCAGGCTGATGACATATCTGGTTTTCACACCAACACGCATATTCCAGTTGTCATTGGTGCTCAAAAGCGGTATGAAGTCACTGGTGATCCACTTTATAAGGAAATGGGGATTTTCTTTATGGACATGGTTAACTCTTCTCACAGCTATGCAACAGGAGGGACATCAGTGAGCGAGTTTTGGTCAGACCCTAAAAGATTGGCGGCCACTCTACAATCAGAGAATGAGGAATCGTGCACAACTTATAACATGCTGAAGGTCTCTCGCAACCTGTTTAGATGGACCAAAGAAACAGCATATGCGGATTATTACGAGCGAGCTCTAACAAATGGTGTGCTAGGTATCCAAAGAGGAACTGAGCCTGGAGTCATGATCTACATGCTCCCACTAGGTCGTGGACAGTCCAAGGCCAAGAGTTATCATGGTTGGGGATCACCATTTGGCAATTTCTGGTGTTGTTATGGCACTGGGATTGAATCGTTCTCTAAGTTGGGAGATTCCATTTATTTTGAAGAGGAAGGAGAAACTCCTGGTCTTTACATTATCCAGTATATATCAAGCTTGCTTGATTGGAAATCTGGGCAAGTCGTACTTGATCAGACAGTTGATAACATCAATTCCTGGGATCCTTACCTTAGAATCACGTTAACATTTTCTTCAACGAAGGGGACTGGCAAATCATCTACCTTGAACTTGCGAATGCCAATTTGGACTGATTCAGATGGTGCAAAGGCAGCATTGAATGGTCGAAGTCTGCAGCCATCAGCTCCAGGTAGTTTCTTACCAATCCCAAATGAATGGAGCCATGGTGACACAGTAACTCTTCAGCTACCCATTACTCTGAGAACAGAAGCTATTAAAGATGATCGGACAGAGTATGCTTCACTCCAAGCAATTCTTTATGGTCCAGTTCTGCTTGCGGCTCATACTAGTGGTAACTGGGACCTCCAAACCAAGTCCAACTCCCTTTCAGACTGGATAACTCCAATCCCTTCCTCGTACAATAACTATTTGGTTTCTTTCTCCCAAGAGTACAAAAACTCTACTTTTGCCTTGGCCAATTTAGACCAGTCAATTGAACTAGACAACTTTCCGGAAGCAGGCACTGCTGCTGCTGTTCATGCCACTTTCAGACTCATTTTAGATGACTTGTCAATAAAAGTTCCCAAAGCGCAAGATGCTATTGGTAAATCAGTCATGCTAGAACTGTTTGATCTTCCTGGGAAGGTTCTTGGGCATCAAGGGAAAGACAAGAACCTTGTGATAGCAGATTCTTCAAGTAGCAAGGACAACATAGTTTTTCGCTTGGTTCCAGGTTTGGATGGAAAGAATGCATCGACCTCCTTGGAGTCAGAAAGTGACAATGGTTGCTTTGTGTATAGCTCGGAGTTGGAGGTTAATGCAACCTTGAAGCTCGGTTGCAATTCAGAATCGTCAAACGATGGATTCAAACAGGCAGCCAGCTTTGTAATGAAGAGTGGAATAAGTCAGTATCATCCTATTAGCTTTGTTGCCCAAGGGGAGCATAGGAATTTTCTTCTACAACCGTTGTCAAGCTTCATGGATGAATTTTATACTGTCTATCTTAACATTACAACTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AbfB Glyco_hydro_127

Protein Analysis

867

Amino Acids

96.32

Weight (kDa)

5.22

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-AFase-like_GH127_cat	PF07944	121 - 499	1.9e-99	Beta-L-arabinofuranosidase, GH127 catalytic domain
Glyco_hydro127M	PF20736	512 - 612	6.6e-15	Beta-L-arabinofuranosidase, GH127 middle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12950 AT5G12960
fragaria_vesca	FvH4_3g43250 FvH4_3g43250 FvH4_3g43250
malus_domestica	MD03G1023400.v1.1 MD11G1028500.v1.1
prunus_persica	Prupe.6G022600_v2.0.a1 Prupe.6G022600_v2.0.a1 Prupe.6G022600_v2.0.a1 Prupe.6G022600_v2.0.a1 Prupe.6G022600_v2.0.a1
pyrus_communis	pycom03g02000 pycom11g02200
rosa_chinensis	RchiOBHm_Chr5g0077301 RchiOBHm_Chr5g0077311
rosa_laevigata	RLG00000002632 RLG00000036683 RLG00000036684
rosa_multiflora	Rmu_sc0000433.1_g000041
rosa_roxburghii	Rroxscaffold_1G00004600 Rroxscaffold_1G00004670
rosa_rugosa	Rorug05G0453600
rosa_samantha	Rh5AG508600 Rh5AG508700 Rh5BG529700 Rh5BG529800 Rh5DG542300 Rh5DG542400
rosa_wichuraiana	Rw5G046870 Rw5G046880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	915, 1098, 1245
AccB1I	GGYRCC	1 cut(s)	490
AccI	GTMKAC	1 cut(s)	761
AccIII	TCCGGA	1 cut(s)	2092
AciI	CCGC	6 cut(s)	309, 538, 1069, 1202, 1301, 1919
AclWI	GGATC	6 cut(s)	368, 381, 1082, 1438, 1619, 1632
AcoI	YGGCCR	2 cut(s)	1203, 2055
AcsI	RAATTY	4 cut(s)	232, 677, 2530, 2567
AcuI	CTGAAG	2 cut(s)	1274, 1808
AcvI	CACGTG	1 cut(s)	202
AdeI	CACNNNGTG	1 cut(s)	212
AfaI	GTAC	7 cut(s)	100, 290, 419, 851, 1590, 2000, 2033
AfiI	CCNNNNNNNGG	1 cut(s)	2099
AflIII	ACRYGT	1 cut(s)	826
AhlI	ACTAGT	1 cut(s)	1928
AjnI	CCWGG	8 cut(s)	115, 484, 1360, 1528, 1619, 1768, 2218, 2311
AjuI	GAANNNNNNNTTGG	2 cut(s)	1690, 1722
Alw21I	GWGCWC	3 cut(s)	1063, 1238, 1321
Alw26I	GTCTC	2 cut(s)	623, 1264
Alw44I	GTGCAC	1 cut(s)	1234
AlwI	GGATC	6 cut(s)	368, 381, 1082, 1438, 1619, 1632
AlwNI	CAGNNNCTG	1 cut(s)	2105
Aor13HI	TCCGGA	1 cut(s)	2092
AoxI	GGCC	5 cut(s)	324, 745, 1203, 1407, 2055
ApaLI	GTGCAC	1 cut(s)	1234
ApeKI	GCWGC	5 cut(s)	1733, 1756, 2108, 2111, 2456
ApoI	RAATTY	4 cut(s)	232, 677, 2530, 2567
AspLEI	GCGC	2 cut(s)	148, 2173
AspS9I	GGNCC	4 cut(s)	325, 1281, 1904, 1942
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	4 cut(s)	542, 1097, 1425, 1820
AsuII	TTCGAA	1 cut(s)	460
AsuNHI	GCTAGC	1 cut(s)	566
AvaII	GGWCC	3 cut(s)	1281, 1904, 1942
BaeGI	GKGCMC	2 cut(s)	493, 1238
BalI	TGGCCA	1 cut(s)	2057
BamHI	GGATCC	2 cut(s)	373, 1624
BanI	GGYRCC	1 cut(s)	490
BanII	GRGCYC	2 cut(s)	715, 1321
BbrPI	CACGTG	1 cut(s)	202
Bbv12I	GWGCWC	3 cut(s)	1063, 1238, 1321
BbvCI	CCTCAGC	1 cut(s)	84
BbvI	GCAGC	5 cut(s)	1745, 1768, 2095, 2098, 2468
BccI	CCATC	7 cut(s)	115, 799, 1272, 1715, 1768, 2315, 2435
BciT130I	CCWGG	8 cut(s)	117, 486, 1362, 1530, 1621, 1770, 2220, 2313
BciVI	GTATCC	1 cut(s)	1352
BclI	TGATCA	3 cut(s)	754, 778, 1594
BcnI	CCSGG	1 cut(s)	330
BcoDI	GTCTC	2 cut(s)	623, 1264
BcuI	ACTAGT	1 cut(s)	1928
BfaI	CTAG	8 cut(s)	413, 567, 986, 1337, 1388, 1929, 2081, 2201
BfmI	CTRYAG	1 cut(s)	1754
BfuI	GTATCC	1 cut(s)	1352
BisI	GCNGC	7 cut(s)	1203, 1734, 1757, 1920, 2109, 2112, 2457
BlsI	GCNGC	7 cut(s)	1204, 1735, 1758, 1921, 2110, 2113, 2458
Bme1390I	CCNGG	9 cut(s)	117, 330, 486, 1362, 1530, 1621, 1770, 2220, 2313
Bme18I	GGWCC	3 cut(s)	1281, 1904, 1942
BmgT120I	GGNCC	4 cut(s)	325, 1281, 1904, 1942
BmiI	GGNNCC	8 cut(s)	327, 375, 492, 714, 1626, 1802, 1943, 2310
BmrFI	CCNGG	9 cut(s)	117, 330, 486, 1362, 1530, 1621, 1770, 2220, 2313
BmrI	ACTGGG	2 cut(s)	1476, 1948
BmsI	GCATC	6 cut(s)	134, 490, 530, 2167, 2245, 2342
BmtI	GCTAGC	1 cut(s)	570
BmuI	ACTGGG	2 cut(s)	1476, 1948
BplI	GAGNNNNNCTC	4 cut(s)	173, 205, 324, 356
BpmI	CTGGAG	2 cut(s)	1383, 1752
Bpu10I	CCTNAGC	1 cut(s)	84
Bpu14I	TTCGAA	1 cut(s)	460
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	330
BsaAI	YACGTR	1 cut(s)	202
BsaBI	GATNNNNATC	1 cut(s)	302
BsaI	GGTCTC	1 cut(s)	1264
BsaWI	WCCGGW	2 cut(s)	291, 2092
BsaXI	ACNNNNNCTCC	2 cut(s)	1792, 1822
Bsc4I	CCNNNNNNNGG	1 cut(s)	2099
Bse3DI	GCAATG	2 cut(s)	353, 561
Bse8I	GATNNNNATC	1 cut(s)	302
BseAI	TCCGGA	1 cut(s)	2092
BseBI	CCWGG	8 cut(s)	117, 486, 1362, 1530, 1621, 1770, 2220, 2313
BseGI	GGATG	7 cut(s)	77, 112, 126, 810, 2326, 2494, 2569
BseJI	GATNNNNATC	1 cut(s)	302
BseLI	CCNNNNNNNGG	1 cut(s)	2099
BseMI	GCAATG	2 cut(s)	353, 561
BseMII	CTCAG	5 cut(s)	75, 312, 663, 1347, 1832
BseSI	GKGCMC	2 cut(s)	493, 1238
BseXI	GCAGC	5 cut(s)	1745, 1768, 2095, 2098, 2468
BsgI	GTGCAG	1 cut(s)	1022
BshFI	GGCC	5 cut(s)	326, 747, 1205, 1409, 2057
BshNI	GGYRCC	1 cut(s)	490
BsiHKAI	GWGCWC	3 cut(s)	1063, 1238, 1321
BsiSI	CCGG	3 cut(s)	292, 330, 2093
BslFI	GGGAC	3 cut(s)	1174, 1681, 1955
BslI	CCNNNNNNNGG	1 cut(s)	2099
BsmAI	GTCTC	2 cut(s)	623, 1264
BsmFI	GGGAC	3 cut(s)	1174, 1681, 1955
BsmI	GAATGC	2 cut(s)	1704, 2335
BsnI	GGCC	5 cut(s)	326, 747, 1205, 1409, 2057
Bso31I	GGTCTC	1 cut(s)	1264
Bsp119I	TTCGAA	1 cut(s)	460
Bsp1286I	GDGCHC	5 cut(s)	493, 715, 1063, 1238, 1321
Bsp13I	TCCGGA	1 cut(s)	2092
Bsp1407I	TGTACA	1 cut(s)	98
Bsp19I	CCATGG	1 cut(s)	1804
BspACI	CCGC	6 cut(s)	309, 538, 1069, 1202, 1301, 1919
BspANI	GGCC	5 cut(s)	326, 747, 1205, 1409, 2057
BspCNI	CTCAG	5 cut(s)	76, 313, 664, 1348, 1833
BspEI	TCCGGA	1 cut(s)	2092
BspHI	TCATGA	1 cut(s)	1368
BspLI	GGNNCC	8 cut(s)	327, 375, 492, 714, 1626, 1802, 1943, 2310
BspMAI	CTGCAG	1 cut(s)	1758
BspOI	GCTAGC	1 cut(s)	570
BspPI	GGATC	6 cut(s)	368, 381, 1082, 1438, 1619, 1632
BspT104I	TTCGAA	1 cut(s)	460
BspT107I	GGYRCC	1 cut(s)	490
BspTNI	GGTCTC	1 cut(s)	1264
BsrDI	GCAATG	2 cut(s)	353, 561
BsrGI	TGTACA	1 cut(s)	98
BssNAI	GTATAC	1 cut(s)	762
BssT1I	CCWWGG	5 cut(s)	1404, 1804, 2052, 2343, 2515
Bst1107I	GTATAC	1 cut(s)	762
Bst2UI	CCWGG	8 cut(s)	117, 486, 1362, 1530, 1621, 1770, 2220, 2313
Bst6I	CTCTTC	4 cut(s)	1141, 1506, 1827, 2468
BstAPI	GCANNNNNTGC	1 cut(s)	2105
BstAUI	TGTACA	1 cut(s)	98
BstBAI	YACGTR	1 cut(s)	202
BstBI	TTCGAA	1 cut(s)	460
BstC8I	GCNNGC	8 cut(s)	568, 745, 1005, 1317, 1562, 1917, 2101, 2461
BstDEI	CTNAG	7 cut(s)	84, 321, 672, 1356, 1485, 1634, 1841
BstDSI	CCRYGG	1 cut(s)	1804
BstF5I	GGATG	7 cut(s)	77, 112, 126, 810, 2326, 2494, 2569
BstHHI	GCGC	2 cut(s)	148, 2173
BstMAI	GTCTC	2 cut(s)	623, 1264
BstMWI	GCNNNNNNNGC	5 cut(s)	1004, 1733, 2105, 2120, 2177
BstNI	CCWGG	8 cut(s)	117, 486, 1362, 1530, 1621, 1770, 2220, 2313
BstNSI	RCATGY	2 cut(s)	1252, 1381
BstSCI	CCNGG	9 cut(s)	115, 328, 484, 1360, 1528, 1619, 1768, 2218, 2311
BstSFI	CTRYAG	1 cut(s)	1754
BstSLI	GKGCMC	2 cut(s)	493, 1238
BstV1I	GCAGC	5 cut(s)	1745, 1768, 2095, 2098, 2468
BstX2I	RGATCY	2 cut(s)	373, 1624
BstXI	CCANNNNNNTGG	1 cut(s)	1797
BstYI	RGATCY	2 cut(s)	373, 1624
BstZ17I	GTATAC	1 cut(s)	762
BsuI	GTATCC	1 cut(s)	1352
BsuRI	GGCC	5 cut(s)	326, 747, 1205, 1409, 2057
BtgI	CCRYGG	1 cut(s)	1804
BtsCI	GGATG	7 cut(s)	77, 112, 126, 810, 2326, 2494, 2569
BtsI	GCAGTG	3 cut(s)	652, 1005, 2103
BtsIMutI	CAGTG	8 cut(s)	105, 288, 652, 1005, 1080, 1173, 1464, 2103
Cac8I	GCNNGC	8 cut(s)	568, 745, 1005, 1317, 1562, 1917, 2101, 2461
CaiI	CAGNNNCTG	1 cut(s)	2105
CciI	TCATGA	1 cut(s)	1368
CfoI	GCGC	2 cut(s)	148, 2173
Cfr13I	GGNCC	4 cut(s)	325, 1281, 1904, 1942
Csp6I	GTAC	7 cut(s)	99, 289, 418, 850, 1589, 1999, 2032
CviQI	GTAC	7 cut(s)	99, 289, 418, 850, 1589, 1999, 2032
DdeI	CTNAG	7 cut(s)	84, 321, 672, 1356, 1485, 1634, 1841
DraIII	CACNNNGTG	1 cut(s)	212
EaeI	YGGCCR	2 cut(s)	1203, 2055
Eam1104I	CTCTTC	4 cut(s)	1141, 1506, 1827, 2468
EarI	CTCTTC	4 cut(s)	1141, 1506, 1827, 2468
Ecl136II	GAGCTC	1 cut(s)	1319
Eco130I	CCWWGG	5 cut(s)	1404, 1804, 2052, 2343, 2515
Eco147I	AGGCCT	1 cut(s)	747
Eco24I	GRGCYC	2 cut(s)	715, 1321
Eco31I	GGTCTC	1 cut(s)	1264
Eco32I	GATATC	2 cut(s)	653, 843
Eco47I	GGWCC	3 cut(s)	1281, 1904, 1942
Eco53kI	GAGCTC	1 cut(s)	1319
Eco57I	CTGAAG	2 cut(s)	1274, 1808
Eco72I	CACGTG	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	1319
EcoO109I	RGGNCCY	2 cut(s)	325, 1942
EcoRII	CCWGG	8 cut(s)	115, 484, 1360, 1528, 1619, 1768, 2218, 2311
EcoRV	GATATC	2 cut(s)	653, 843
EcoT14I	CCWWGG	5 cut(s)	1404, 1804, 2052, 2343, 2515
EcoT22I	ATGCAT	1 cut(s)	2335
EcoT38I	GRGCYC	2 cut(s)	715, 1321
ErhI	CCWWGG	5 cut(s)	1404, 1804, 2052, 2343, 2515
FalI	AAGNNNNNCTT	4 cut(s)	1575, 1607, 1881, 1913
FaqI	GGGAC	3 cut(s)	1174, 1681, 1955
FauI	CCCGC	1 cut(s)	531
FauNDI	CATATG	2 cut(s)	496, 1297
FbaI	TGATCA	3 cut(s)	754, 778, 1594
FblI	GTMKAC	1 cut(s)	761
Fnu4HI	GCNGC	7 cut(s)	1203, 1734, 1757, 1920, 2109, 2112, 2457
FokI	GGATG	7 cut(s)	84, 99, 133, 817, 2333, 2481, 2576
FriOI	GRGCYC	2 cut(s)	715, 1321
Fsp4HI	GCNGC	7 cut(s)	1203, 1734, 1757, 1920, 2109, 2112, 2457
FspBI	CTAG	8 cut(s)	413, 567, 986, 1337, 1388, 1929, 2081, 2201
GlaI	GCGC	2 cut(s)	147, 2172
GluI	GCNGC	7 cut(s)	1203, 1734, 1757, 1920, 2109, 2112, 2457
GsuI	CTGGAG	2 cut(s)	1383, 1752
HaeIII	GGCC	5 cut(s)	326, 747, 1205, 1409, 2057
HapII	CCGG	3 cut(s)	292, 330, 2093
HhaI	GCGC	2 cut(s)	148, 2173
Hin6I	GCGC	2 cut(s)	146, 2171
HinP1I	GCGC	2 cut(s)	146, 2171
HincII	GTYRAC	2 cut(s)	1132, 1647
HindII	GTYRAC	2 cut(s)	1132, 1647
HindIII	AAGCTT	3 cut(s)	783, 1558, 2554
HpaI	GTTAAC	2 cut(s)	1132, 1647
HpaII	CCGG	3 cut(s)	292, 330, 2093
HphI	GGTGA	4 cut(s)	542, 1097, 1425, 1820
Hpy166II	GTNNAC	7 cut(s)	99, 533, 762, 1132, 1236, 1397, 1647
Hpy188III	TCNNGA	3 cut(s)	413, 1369, 2093
Hpy8I	GTNNAC	7 cut(s)	99, 533, 762, 1132, 1236, 1397, 1647
HpyCH4IV	ACGT	3 cut(s)	201, 826, 1643
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1004, 1733, 2105, 2120, 2177
HpyF3I	CTNAG	7 cut(s)	84, 321, 672, 1356, 1485, 1634, 1841
HpySE526I	ACGT	3 cut(s)	201, 826, 1643
HspAI	GCGC	2 cut(s)	146, 2171
Kpn2I	TCCGGA	1 cut(s)	2092
Ksp22I	TGATCA	3 cut(s)	754, 778, 1594
KspAI	GTTAAC	2 cut(s)	1132, 1647
LmnI	GCTCC	7 cut(s)	243, 453, 718, 1386, 1771, 1800, 2521
Lsp1109I	GCAGC	5 cut(s)	1745, 1768, 2095, 2098, 2468
LweI	GCATC	6 cut(s)	134, 490, 530, 2167, 2245, 2342
MaeI	CTAG	8 cut(s)	413, 567, 986, 1337, 1388, 1929, 2081, 2201
MaeII	ACGT	3 cut(s)	201, 826, 1643
MaeIII	GTNAC	7 cut(s)	202, 873, 1078, 1808, 1816, 1934, 2357
MfeI	CAATTG	1 cut(s)	2073
MflI	RGATCY	2 cut(s)	373, 1624
MhlI	GDGCHC	5 cut(s)	493, 715, 1063, 1238, 1321
MlsI	TGGCCA	1 cut(s)	2057
MluNI	TGGCCA	1 cut(s)	2057
MlyI	GAGTC	3 cut(s)	1374, 2127, 2357
MmeI	TCCRAC	6 cut(s)	351, 401, 411, 692, 1983, 2370
Mox20I	TGGCCA	1 cut(s)	2057
Mph1103I	ATGCAT	1 cut(s)	2335
MroI	TCCGGA	1 cut(s)	2092
MscI	TGGCCA	1 cut(s)	2057
MseI	TTAA	6 cut(s)	1131, 1646, 1857, 2397, 2586, 2602
MslI	CAYNNNNRTG	2 cut(s)	1146, 1929
Msp20I	TGGCCA	1 cut(s)	2057
MspA1I	CMGCKG	2 cut(s)	311, 470
MspI	CCGG	3 cut(s)	292, 330, 2093
MspR9I	CCNGG	9 cut(s)	117, 330, 486, 1362, 1530, 1621, 1770, 2220, 2313
MunI	CAATTG	1 cut(s)	2073
Mva1269I	GAATGC	2 cut(s)	1704, 2335
MvaI	CCWGG	8 cut(s)	117, 486, 1362, 1530, 1621, 1770, 2220, 2313
MwoI	GCNNNNNNNGC	5 cut(s)	1004, 1733, 2105, 2120, 2177
NciI	CCSGG	1 cut(s)	330
NcoI	CCATGG	1 cut(s)	1804
NdeI	CATATG	2 cut(s)	496, 1297
NheI	GCTAGC	1 cut(s)	566
NlaIV	GGNNCC	8 cut(s)	327, 375, 492, 714, 1626, 1802, 1943, 2310
NmuCI	GTSAC	5 cut(s)	202, 873, 1078, 1808, 2357
NsiI	ATGCAT	1 cut(s)	2335
NspI	RCATGY	2 cut(s)	1252, 1381
NspV	TTCGAA	1 cut(s)	460
PagI	TCATGA	1 cut(s)	1368
PasI	CCCWGGG	1 cut(s)	485
PceI	AGGCCT	1 cut(s)	747
PctI	GAATGC	2 cut(s)	1704, 2335
PfeI	GAWTC	9 cut(s)	434, 1229, 1475, 1496, 1638, 1715, 2270, 2429, 2445
PkrI	GCNGC	7 cut(s)	1204, 1735, 1758, 1921, 2110, 2113, 2458
PleI	GAGTC	3 cut(s)	1373, 2127, 2356
PmaCI	CACGTG	1 cut(s)	202
PmlI	CACGTG	1 cut(s)	202
PpsI	GAGTC	3 cut(s)	1373, 2127, 2356
Ppu21I	YACGTR	1 cut(s)	202
PpuMI	RGGWCCY	1 cut(s)	1942
PsiI	TTATAA	3 cut(s)	915, 1098, 1245
Psp124BI	GAGCTC	1 cut(s)	1321
Psp5II	RGGWCCY	1 cut(s)	1942
Psp6I	CCWGG	8 cut(s)	115, 484, 1360, 1528, 1619, 1768, 2218, 2311
PspCI	CACGTG	1 cut(s)	202
PspGI	CCWGG	8 cut(s)	115, 484, 1360, 1528, 1619, 1768, 2218, 2311
PspN4I	GGNNCC	8 cut(s)	327, 375, 492, 714, 1626, 1802, 1943, 2310
PspPI	GGNCC	4 cut(s)	325, 1281, 1904, 1942
PspPPI	RGGWCCY	1 cut(s)	1942
PstI	CTGCAG	1 cut(s)	1758
PstNI	CAGNNNCTG	1 cut(s)	2105
PsuI	RGATCY	2 cut(s)	373, 1624
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	7 cut(s)	100, 290, 419, 851, 1590, 2000, 2033
RsaNI	GTAC	7 cut(s)	99, 289, 418, 850, 1589, 1999, 2032
RseI	CAYNNNNRTG	2 cut(s)	1146, 1929
SacI	GAGCTC	1 cut(s)	1321
SaqAI	TTAA	6 cut(s)	1131, 1646, 1857, 2397, 2586, 2602
SatI	GCNGC	7 cut(s)	1203, 1734, 1757, 1920, 2109, 2112, 2457
Sau96I	GGNCC	4 cut(s)	325, 1281, 1904, 1942
SchI	GAGTC	3 cut(s)	1374, 2127, 2357
ScrFI	CCNGG	9 cut(s)	117, 330, 486, 1362, 1530, 1621, 1770, 2220, 2313
SduI	GDGCHC	5 cut(s)	493, 715, 1063, 1238, 1321
SfaNI	GCATC	6 cut(s)	134, 490, 530, 2167, 2245, 2342
SfcI	CTRYAG	1 cut(s)	1754
SfuI	TTCGAA	1 cut(s)	460
SinI	GGWCC	3 cut(s)	1281, 1904, 1942
SmiMI	CAYNNNNRTG	2 cut(s)	1146, 1929
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
SpeI	ACTAGT	1 cut(s)	1928
SseBI	AGGCCT	1 cut(s)	747
SsiI	CCGC	6 cut(s)	309, 538, 1069, 1202, 1301, 1919
SspMI	CTAG	8 cut(s)	413, 567, 986, 1337, 1388, 1929, 2081, 2201
SstI	GAGCTC	1 cut(s)	1321
StuI	AGGCCT	1 cut(s)	747
StyD4I	CCNGG	9 cut(s)	115, 328, 484, 1360, 1528, 1619, 1768, 2218, 2311
StyI	CCWWGG	5 cut(s)	1404, 1804, 2052, 2343, 2515
TaiI	ACGT	3 cut(s)	204, 829, 1646
TaqI	TCGA	6 cut(s)	23, 460, 524, 845, 1747, 2336
TatI	WGTACW	3 cut(s)	98, 849, 2031
TauI	GCSGC	2 cut(s)	1205, 1922
TfiI	GAWTC	9 cut(s)	434, 1229, 1475, 1496, 1638, 1715, 2270, 2429, 2445
Tru1I	TTAA	6 cut(s)	1131, 1646, 1857, 2397, 2586, 2602
Tru9I	TTAA	6 cut(s)	1131, 1646, 1857, 2397, 2586, 2602
TscAI	CASTG	8 cut(s)	112, 288, 652, 1005, 1087, 1173, 1471, 2110
TseFI	GTSAC	5 cut(s)	202, 873, 1078, 1808, 2357
TseI	GCWGC	5 cut(s)	1733, 1756, 2108, 2111, 2456
Tsp45I	GTSAC	5 cut(s)	202, 873, 1078, 1808, 2357
TspRI	CASTG	8 cut(s)	112, 288, 652, 1005, 1087, 1173, 1471, 2110
VneI	GTGCAC	1 cut(s)	1234
VpaK11BI	GGWCC	3 cut(s)	1281, 1904, 1942
XapI	RAATTY	4 cut(s)	232, 677, 2530, 2567
XbaI	TCTAGA	1 cut(s)	412
XceI	RCATGY	2 cut(s)	1252, 1381
XmiI	GTMKAC	1 cut(s)	761
XspI	CTAG	8 cut(s)	413, 567, 986, 1337, 1388, 1929, 2081, 2201
Zsp2I	ATGCAT	1 cut(s)	2335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.