RLG00000004095

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0010034
Physical Location & Seq
Reverse (-)
56153062 .. 56156639
3578 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004095

Sequence Viewer

Length: 981 bp
ATGGCCTTTCTAGCAACTCATGGGTCGATGAAGGGCTTCAAGCAGAGGCACAAGCATCGAAGGACGCAGCTACACCATCTGACAGAGCACTTGCCGAGGAAAGCTAATCTGCCAGTGATTCGTAGAAATGCTAACACGCAGTTAGCTGGTGCAGATGAAATTAATATAGAAAAGGAGATTGCGGATAGGCCAAACAGCAAGCTAGTGTATCTGAATGTATGTCCCCTGGAGATATTGCATCTTTCAAAAGAAACACTGAGAAATGCTGGTCTTCTGTCCGATTCTCCTCCAAATAGTCCACATTCCAATATGGAAGTTCCTGCTGAAGAAGATGATCCCTCATTAGATAACGGAGAGGAAGGGCCTGATAATGTATTTGACCTACTGTACAACCACAGGAAGGGGCATCAAAAATCAAAGTTGTTTTCTCTACTCTTGAGCCCAAACCAACTAGTCATACTTTGTATCTTGGAAGTACTGAGAAGGTTGAACCCTACATCAGAGCATACCAGACCACTATGCAAGAGCAGTGTGATTACAACTGAACAATATAAGTGGGCTATGGCGAAAACAACTAAGAAAGTCATGAAATACCATTCTAAAGCCAATAGCGCAAGTTTCCTAATCAAAGAAGGTGAGAAGGTAAATACCAACCCGTCACTCAAATTTGAATTCTTCTTCTTCTACCTGCCTACAGCTGCGATTGTGATCAAGGTAGGACAGAAATATTCACAATGGGAAATTGCTCCTCTCAAAGGAACCTATAGGGAGTGTCCTAACTTTACTAGGTTCCTTAAAGACTCTGGGGGTATCCTACAGTTTAAAAGTCCTAAGTTAGCTTCTGACATCCTCGCTGGTTTTCCAGGCTATGGCATTTTTCAGGAGGGCAAGGCATCGGTGCCATTGCCTGAGGAAGAGCCCCTAACTTGTGGGCAATTCTACCTTCTTCCACTCAGGCCTAAAAAGGAAGTAGATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EloA-BP1 PHD zf-C3HC4_2 zf-RING_2

Protein Analysis

327

Amino Acids

36.89

Weight (kDa)

9.18

Isoelectric Point (pI)

47.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 696
AccB1I GGYRCC 1 cut(s) 898
AccB7I CCANNNNNTGG 1 cut(s) 869
AciI CCGC 1 cut(s) 182
AclWI GGATC 1 cut(s) 329
AcsI RAATTY 2 cut(s) 665, 671
AcuI CTGAAG 1 cut(s) 345
AfaI GTAC 2 cut(s) 389, 477
AfiI CCNNNNNNNGG 3 cut(s) 400, 755, 869
AgsI TTSAA 4 cut(s) 40, 246, 490, 671
AhlI ACTAGT 1 cut(s) 451
AjnI CCWGG 2 cut(s) 225, 862
AluBI AGCT 6 cut(s) 70, 104, 146, 202, 698, 839
AluI AGCT 6 cut(s) 70, 104, 146, 202, 698, 839
Alw21I GWGCWC 1 cut(s) 90
AlwI GGATC 1 cut(s) 329
AoxI GGCC 4 cut(s) 3, 188, 362, 956
ApeKI GCWGC 2 cut(s) 67, 698
ApoI RAATTY 2 cut(s) 665, 671
AseI ATTAAT 1 cut(s) 162
Asp700I GAANNNNTTC 1 cut(s) 35
AspLEI GCGC 1 cut(s) 614
AspS9I GGNCC 1 cut(s) 362
AsuHPI GGTGA 1 cut(s) 647
AxyI CCTNAGG 1 cut(s) 909
BanI GGYRCC 1 cut(s) 898
BanII GRGCYC 2 cut(s) 443, 921
BbsI GAAGAC 1 cut(s) 263
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 2 cut(s) 79, 685
BccI CCATC 1 cut(s) 84
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BciT130I CCWGG 2 cut(s) 227, 864
BciVI GTATCC 1 cut(s) 821
BclI TGATCA 1 cut(s) 708
BcuI ACTAGT 1 cut(s) 451
BfaI CTAG 4 cut(s) 11, 203, 452, 786
BfmI CTRYAG 3 cut(s) 693, 763, 815
BfuAI ACCTGC 1 cut(s) 696
BfuI GTATCC 1 cut(s) 821
BisI GCNGC 2 cut(s) 68, 699
BlsI GCNGC 2 cut(s) 69, 700
BmcAI AGTACT 1 cut(s) 477
Bme1390I CCNGG 2 cut(s) 227, 864
BmgT120I GGNCC 1 cut(s) 362
BmiI GGNNCC 3 cut(s) 760, 791, 900
BmrFI CCNGG 2 cut(s) 227, 864
BmsI GCATC 4 cut(s) 64, 247, 415, 902
BpiI GAAGAC 1 cut(s) 263
BpmI CTGGAG 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 457
BsaBI GATNNNNATC 1 cut(s) 707
BsaJI CCNNGG 2 cut(s) 95, 225
Bsc4I CCNNNNNNNGG 3 cut(s) 400, 755, 869
Bse1I ACTGG 1 cut(s) 113
Bse21I CCTNAGG 1 cut(s) 909
Bse3DI GCAATG 1 cut(s) 902
Bse8I GATNNNNATC 1 cut(s) 707
BseBI CCWGG 2 cut(s) 227, 864
BseDI CCNNGG 2 cut(s) 95, 225
BseGI GGATG 1 cut(s) 846
BseJI GATNNNNATC 1 cut(s) 707
BseLI CCNNNNNNNGG 3 cut(s) 400, 755, 869
BseMI GCAATG 1 cut(s) 902
BseMII CTCAG 4 cut(s) 248, 470, 900, 967
BseNI ACTGG 1 cut(s) 113
BseRI GAGGAG 2 cut(s) 276, 738
BseXI GCAGC 2 cut(s) 79, 685
BsgI GTGCAG 1 cut(s) 171
BshFI GGCC 4 cut(s) 5, 190, 364, 958
BshNI GGYRCC 1 cut(s) 898
BsiHKAI GWGCWC 1 cut(s) 90
BslFI GGGAC 1 cut(s) 207
BslI CCNNNNNNNGG 3 cut(s) 400, 755, 869
BsmFI GGGAC 1 cut(s) 207
BsnI GGCC 4 cut(s) 5, 190, 364, 958
Bsp1286I GDGCHC 3 cut(s) 90, 443, 921
Bsp1407I TGTACA 1 cut(s) 387
Bsp143I GATC 2 cut(s) 334, 708
BspACI CCGC 1 cut(s) 182
BspANI GGCC 4 cut(s) 5, 190, 364, 958
BspCNI CTCAG 4 cut(s) 249, 471, 901, 966
BspHI TCATGA 1 cut(s) 585
BspLI GGNNCC 3 cut(s) 760, 791, 900
BspMI ACCTGC 1 cut(s) 696
BspPI GGATC 1 cut(s) 329
BspQI GCTCTTC 1 cut(s) 909
BspT107I GGYRCC 1 cut(s) 898
BsrDI GCAATG 1 cut(s) 902
BsrGI TGTACA 1 cut(s) 387
BsrI ACTGG 1 cut(s) 113
BssECI CCNNGG 2 cut(s) 95, 225
BssMI GATC 2 cut(s) 334, 708
Bst2UI CCWGG 2 cut(s) 227, 864
Bst4CI ACNGT 2 cut(s) 387, 819
Bst6I CTCTTC 1 cut(s) 909
BstAUI TGTACA 1 cut(s) 387
BstC8I GCNNGC 1 cut(s) 200
BstDEI CTNAG 6 cut(s) 257, 479, 576, 831, 909, 953
BstENI CCTNNNNNAGG 1 cut(s) 753
BstF5I GGATG 1 cut(s) 846
BstHHI GCGC 1 cut(s) 614
BstKTI GATC 2 cut(s) 337, 711
BstMBI GATC 2 cut(s) 334, 708
BstMWI GCNNNNNNNGC 2 cut(s) 11, 611
BstNI CCWGG 2 cut(s) 227, 864
BstSCI CCNGG 2 cut(s) 225, 862
BstSFI CTRYAG 3 cut(s) 693, 763, 815
BstV1I GCAGC 2 cut(s) 79, 685
BstV2I GAAGAC 1 cut(s) 263
Bsu36I CCTNAGG 1 cut(s) 909
BsuI GTATCC 1 cut(s) 821
BsuRI GGCC 4 cut(s) 5, 190, 364, 958
BtsCI GGATG 1 cut(s) 846
BtsI GCAGTG 1 cut(s) 535
BtsIMutI CAGTG 3 cut(s) 120, 254, 535
BveI ACCTGC 1 cut(s) 696
Cac8I GCNNGC 1 cut(s) 200
CciI TCATGA 1 cut(s) 585
CfoI GCGC 1 cut(s) 614
Cfr13I GGNCC 1 cut(s) 362
CseI GACGC 1 cut(s) 73
Csp6I GTAC 2 cut(s) 388, 476
CspCI CAANNNNNGTGG 2 cut(s) 536, 571
CviAII CATG 2 cut(s) 20, 586
CviQI GTAC 2 cut(s) 388, 476
DdeI CTNAG 6 cut(s) 257, 479, 576, 831, 909, 953
DpnI GATC 2 cut(s) 336, 710
DpnII GATC 2 cut(s) 334, 708
DraI TTTAAA 1 cut(s) 823
Eam1104I CTCTTC 1 cut(s) 909
EarI CTCTTC 1 cut(s) 909
Eco147I AGGCCT 1 cut(s) 958
Eco24I GRGCYC 2 cut(s) 443, 921
Eco57I CTGAAG 1 cut(s) 345
Eco81I CCTNAGG 1 cut(s) 909
EcoNI CCTNNNNNAGG 1 cut(s) 753
EcoO109I RGGNCCY 1 cut(s) 362
EcoRI GAATTC 1 cut(s) 671
EcoRII CCWGG 2 cut(s) 225, 862
EcoT38I GRGCYC 2 cut(s) 443, 921
FaeI CATG 2 cut(s) 23, 589
FaqI GGGAC 1 cut(s) 207
FatI CATG 2 cut(s) 19, 585
FbaI TGATCA 1 cut(s) 708
Fnu4HI GCNGC 2 cut(s) 68, 699
FokI GGATG 1 cut(s) 833
FriOI GRGCYC 2 cut(s) 443, 921
Fsp4HI GCNGC 2 cut(s) 68, 699
FspBI CTAG 4 cut(s) 11, 203, 452, 786
GlaI GCGC 1 cut(s) 613
GluI GCNGC 2 cut(s) 68, 699
GsuI CTGGAG 1 cut(s) 248
HaeIII GGCC 4 cut(s) 5, 190, 364, 958
HgaI GACGC 1 cut(s) 73
HhaI GCGC 1 cut(s) 614
Hin1II CATG 2 cut(s) 23, 589
Hin6I GCGC 1 cut(s) 612
HinP1I GCGC 1 cut(s) 612
HinfI GANTC 4 cut(s) 118, 281, 800, 974
HphI GGTGA 1 cut(s) 647
Hpy166II GTNNAC 1 cut(s) 299
Hpy188I TCNGA 5 cut(s) 81, 213, 280, 502, 844
Hpy188III TCNNGA 3 cut(s) 436, 586, 881
Hpy8I GTNNAC 1 cut(s) 299
HpyAV CCTTC 8 cut(s) 25, 54, 353, 394, 477, 626, 634, 953
HpyCH4III ACNGT 2 cut(s) 387, 819
HpyCH4V TGCA 3 cut(s) 152, 238, 522
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 611
HpyF3I CTNAG 6 cut(s) 257, 479, 576, 831, 909, 953
Hsp92II CATG 2 cut(s) 23, 589
HspAI GCGC 1 cut(s) 612
Ksp22I TGATCA 1 cut(s) 708
Kzo9I GATC 2 cut(s) 334, 708
LguI GCTCTTC 1 cut(s) 909
LmnI GCTCC 1 cut(s) 751
Lsp1109I GCAGC 2 cut(s) 79, 685
LweI GCATC 4 cut(s) 64, 247, 415, 902
MaeI CTAG 4 cut(s) 11, 203, 452, 786
MaeIII GTNAC 1 cut(s) 657
MalI GATC 2 cut(s) 336, 710
MboI GATC 2 cut(s) 334, 708
MboII GAAGA 8 cut(s) 263, 338, 341, 667, 670, 673, 926, 938
MhlI GDGCHC 3 cut(s) 90, 443, 921
MluCI AATT 5 cut(s) 159, 665, 671, 741, 935
MlyI GAGTC 1 cut(s) 794
MnlI CCTC 9 cut(s) 39, 90, 297, 349, 349, 759, 860, 877, 904
MroXI GAANNNNTTC 1 cut(s) 35
MseI TTAA 4 cut(s) 162, 795, 822, 979
MspA1I CMGCKG 1 cut(s) 698
MspR9I CCNGG 2 cut(s) 227, 864
MvaI CCWGG 2 cut(s) 227, 864
MwoI GCNNNNNNNGC 2 cut(s) 11, 611
NdeII GATC 2 cut(s) 334, 708
NlaIII CATG 2 cut(s) 23, 589
NlaIV GGNNCC 3 cut(s) 760, 791, 900
NmeAIII GCCGAG 1 cut(s) 120
NmuCI GTSAC 1 cut(s) 657
PagI TCATGA 1 cut(s) 585
PceI AGGCCT 1 cut(s) 958
PciSI GCTCTTC 1 cut(s) 909
PdmI GAANNNNTTC 1 cut(s) 35
PfeI GAWTC 3 cut(s) 118, 281, 974
PflMI CCANNNNNTGG 1 cut(s) 869
PkrI GCNGC 2 cut(s) 69, 700
PleI GAGTC 1 cut(s) 794
PpsI GAGTC 1 cut(s) 794
PshBI ATTAAT 1 cut(s) 162
Psp6I CCWGG 2 cut(s) 225, 862
PspGI CCWGG 2 cut(s) 225, 862
PspN4I GGNNCC 3 cut(s) 760, 791, 900
PspPI GGNCC 1 cut(s) 362
PvuII CAGCTG 1 cut(s) 698
RsaI GTAC 2 cut(s) 389, 477
RsaNI GTAC 2 cut(s) 388, 476
SapI GCTCTTC 1 cut(s) 909
SaqAI TTAA 4 cut(s) 162, 795, 822, 979
SatI GCNGC 2 cut(s) 68, 699
Sau3AI GATC 2 cut(s) 334, 708
Sau96I GGNCC 1 cut(s) 362
ScaI AGTACT 1 cut(s) 477
SchI GAGTC 1 cut(s) 794
ScrFI CCNGG 2 cut(s) 227, 864
SduI GDGCHC 3 cut(s) 90, 443, 921
SfaNI GCATC 4 cut(s) 64, 247, 415, 902
SfcI CTRYAG 3 cut(s) 693, 763, 815
SmlI CTYRAG 1 cut(s) 436
SmoI CTYRAG 1 cut(s) 436
SpeI ACTAGT 1 cut(s) 451
Sse9I AATT 5 cut(s) 159, 665, 671, 741, 935
SseBI AGGCCT 1 cut(s) 958
SsiI CCGC 1 cut(s) 182
SspI AATATT 1 cut(s) 728
SspMI CTAG 4 cut(s) 11, 203, 452, 786
StuI AGGCCT 1 cut(s) 958
StyD4I CCNGG 2 cut(s) 225, 862
TaaI ACNGT 2 cut(s) 387, 819
TaqI TCGA 2 cut(s) 26, 58
TasI AATT 5 cut(s) 159, 665, 671, 741, 935
TatI WGTACW 2 cut(s) 387, 475
TfiI GAWTC 3 cut(s) 118, 281, 974
Tru1I TTAA 4 cut(s) 162, 795, 822, 979
Tru9I TTAA 4 cut(s) 162, 795, 822, 979
TscAI CASTG 3 cut(s) 120, 261, 535
TseFI GTSAC 1 cut(s) 657
TseI GCWGC 2 cut(s) 67, 698
Tsp45I GTSAC 1 cut(s) 657
TspDTI ATGAA 3 cut(s) 44, 171, 602
TspGWI ACGGA 1 cut(s) 366
TspRI CASTG 3 cut(s) 120, 261, 535
Van91I CCANNNNNTGG 1 cut(s) 869
VspI ATTAAT 1 cut(s) 162
XagI CCTNNNNNAGG 1 cut(s) 753
XapI RAATTY 2 cut(s) 665, 671
XmnI GAANNNNTTC 1 cut(s) 35
XspI CTAG 4 cut(s) 11, 203, 452, 786
ZrmI AGTACT 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.