Rmu_sc0003314.1_g000019

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003314.1
OG0010034
Physical Location & Seq
Forward (+)
65681 .. 67265
1585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003314.1_g000019.1.cds

Sequence Viewer

Length: 747 bp
atgtgcaacttgctttctgtggatgtctttcttctgggaaagcaagcatttgagaatgcactccttgcaaaagacatggcctttctggcaactcatggggtcgatgaagggcatcaagcagaggcacaagcattgaagggtttgatggagtctctgctgagtctctccctctggacgcagctataccatctgacagagcacttgccgaggaaagctaatctgccagtgattcgtagaaatgcgaacacgcagttagctggtgcagatgaaattaatatagaaaaggagattgcggataggccaaacagcaagctagtgtatctgaatctatgtcccctggagatattgcatctttcaaaaggtaacaaagctagtggaaccccagtcattagttccttcccatcttcagtccatgctaatcgatctggggcatcaaaaatcaaagttgttttctctactcttgagcccaaaccaactaatcatactttgtatcttggaagtactgagaaggtggttgaagtacaaaaagattcttcctgcatgctcgagaatgatacttgttcaggtcttccaaattcaaccagggagagtgagactgagaagtcttatgttcctttggaatccatattcggtaaagaaggtgaagagctttgtgttgcagaatgtgaagaattatatggaccagataaagaaccactgatcaaaagaaatttccaggatcatcagaaataccacatggatcaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EloA-BP1 PHD zf-C3HC4_2 zf-RING_2

Protein Analysis

248

Amino Acids

27.51

Weight (kDa)

5.51

Isoelectric Point (pI)

38.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 601
AciI CCGC 1 cut(s) 293
AclWI GGATC 1 cut(s) 726
AcsI RAATTY 2 cut(s) 574, 709
AcuI CTGAAG 1 cut(s) 390
AfaI GTAC 2 cut(s) 502, 522
AgsI TTSAA 4 cut(s) 136, 357, 518, 579
AjnI CCWGG 3 cut(s) 336, 581, 714
AluBI AGCT 6 cut(s) 181, 215, 257, 313, 371, 649
AluI AGCT 6 cut(s) 181, 215, 257, 313, 371, 649
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 3 cut(s) 156, 167, 587
AlwI GGATC 1 cut(s) 726
Ama87I CYCGRG 1 cut(s) 545
AoxI GGCC 2 cut(s) 78, 299
ApeKI GCWGC 1 cut(s) 178
ApoI RAATTY 2 cut(s) 574, 709
AseI ATTAAT 1 cut(s) 273
AspS9I GGNCC 1 cut(s) 680
AsuHPI GGTGA 1 cut(s) 653
AvaI CYCGRG 1 cut(s) 545
AvaII GGWCC 1 cut(s) 680
BanII GRGCYC 1 cut(s) 468
BbsI GAAGAC 1 cut(s) 560
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 190
BccI CCATC 3 cut(s) 139, 195, 409
BciT130I CCWGG 3 cut(s) 338, 583, 716
BclI TGATCA 1 cut(s) 699
BcoDI GTCTC 3 cut(s) 156, 167, 587
BfaI CTAG 2 cut(s) 314, 372
BglI GCCNNNNNGGC 1 cut(s) 86
BisI GCNGC 1 cut(s) 179
BlsI GCNGC 1 cut(s) 180
BmcAI AGTACT 1 cut(s) 502
Bme1390I CCNGG 3 cut(s) 338, 583, 716
Bme18I GGWCC 1 cut(s) 680
BmeT110I CYCGRG 1 cut(s) 545
BmgT120I GGNCC 1 cut(s) 680
BmiI GGNNCC 1 cut(s) 379
BmrFI CCNGG 3 cut(s) 338, 583, 716
BmrI ACTGGG 1 cut(s) 377
BmsI GCATC 3 cut(s) 121, 358, 440
BmuI ACTGGG 1 cut(s) 377
BpiI GAAGAC 1 cut(s) 560
BpmI CTGGAG 1 cut(s) 359
BpuEI CTTGAG 1 cut(s) 482
Bsa29I ATCGAT 1 cut(s) 421
BsaJI CCNNGG 3 cut(s) 206, 336, 582
Bse1I ACTGG 2 cut(s) 224, 383
BseBI CCWGG 3 cut(s) 338, 583, 716
BseCI ATCGAT 1 cut(s) 421
BseDI CCNNGG 3 cut(s) 206, 336, 582
BseGI GGATG 1 cut(s) 28
BseMII CTCAG 3 cut(s) 149, 495, 588
BseNI ACTGG 2 cut(s) 224, 383
BseXI GCAGC 1 cut(s) 190
BsgI GTGCAG 1 cut(s) 282
BshFI GGCC 2 cut(s) 80, 301
BshVI ATCGAT 1 cut(s) 421
BsiHKAI GWGCWC 1 cut(s) 201
BsiHKCI CYCGRG 1 cut(s) 545
BslFI GGGAC 1 cut(s) 318
BsmAI GTCTC 3 cut(s) 156, 167, 587
BsmFI GGGAC 1 cut(s) 318
BsmI GAATGC 1 cut(s) 61
BsnI GGCC 2 cut(s) 80, 301
BsoBI CYCGRG 1 cut(s) 545
Bsp1286I GDGCHC 2 cut(s) 201, 468
Bsp143I GATC 4 cut(s) 422, 699, 718, 739
BspACI CCGC 1 cut(s) 293
BspANI GGCC 2 cut(s) 80, 301
BspCNI CTCAG 3 cut(s) 150, 496, 589
BspDI ATCGAT 1 cut(s) 421
BspLI GGNNCC 1 cut(s) 379
BspPI GGATC 1 cut(s) 726
BspQI GCTCTTC 1 cut(s) 639
BsrI ACTGG 2 cut(s) 224, 383
BssECI CCNNGG 3 cut(s) 206, 336, 582
BssMI GATC 4 cut(s) 422, 699, 718, 739
Bst2UI CCWGG 3 cut(s) 338, 583, 716
Bst6I CTCTTC 1 cut(s) 639
BstAPI GCANNNNNTGC 1 cut(s) 65
BstC8I GCNNGC 3 cut(s) 45, 311, 542
BstDEI CTNAG 3 cut(s) 158, 504, 597
BstF5I GGATG 1 cut(s) 28
BstKTI GATC 4 cut(s) 425, 702, 721, 742
BstMAI GTCTC 3 cut(s) 156, 167, 587
BstMBI GATC 4 cut(s) 422, 699, 718, 739
BstMWI GCNNNNNNNGC 2 cut(s) 65, 86
BstNI CCWGG 3 cut(s) 338, 583, 716
BstNSI RCATGY 1 cut(s) 544
BstSCI CCNGG 3 cut(s) 336, 581, 714
BstV1I GCAGC 1 cut(s) 190
BstV2I GAAGAC 1 cut(s) 560
Bsu15I ATCGAT 1 cut(s) 421
BsuRI GGCC 2 cut(s) 80, 301
BsuTUI ATCGAT 1 cut(s) 421
BtsCI GGATG 1 cut(s) 28
BtsIMutI CAGTG 2 cut(s) 231, 695
Cac8I GCNNGC 3 cut(s) 45, 311, 542
Cfr13I GGNCC 1 cut(s) 680
ClaI ATCGAT 1 cut(s) 421
CseI GACGC 1 cut(s) 184
Csp6I GTAC 2 cut(s) 501, 521
CspCI CAANNNNNGTGG 2 cut(s) 355, 390
CviAII CATG 5 cut(s) 76, 95, 413, 541, 736
CviJI RGCY 9 cut(s) 80, 181, 215, 257, 301, 313, 371, 466, 649
CviKI_1 RGCY 9 cut(s) 80, 181, 215, 257, 301, 313, 371, 466, 649
CviQI GTAC 2 cut(s) 501, 521
DdeI CTNAG 3 cut(s) 158, 504, 597
DpnI GATC 4 cut(s) 424, 701, 720, 741
DpnII GATC 4 cut(s) 422, 699, 718, 739
DrdI GACNNNNNNGTC 1 cut(s) 601
DseDI GACNNNNNNGTC 1 cut(s) 601
Eam1104I CTCTTC 1 cut(s) 639
EarI CTCTTC 1 cut(s) 639
Eco24I GRGCYC 1 cut(s) 468
Eco47I GGWCC 1 cut(s) 680
Eco57I CTGAAG 1 cut(s) 390
Eco88I CYCGRG 1 cut(s) 545
EcoRII CCWGG 3 cut(s) 336, 581, 714
EcoT38I GRGCYC 1 cut(s) 468
FaeI CATG 5 cut(s) 79, 98, 416, 544, 739
FaqI GGGAC 1 cut(s) 318
FatI CATG 5 cut(s) 75, 94, 412, 540, 735
FbaI TGATCA 1 cut(s) 699
Fnu4HI GCNGC 1 cut(s) 179
FokI GGATG 1 cut(s) 35
FriOI GRGCYC 1 cut(s) 468
Fsp4HI GCNGC 1 cut(s) 179
FspBI CTAG 2 cut(s) 314, 372
GluI GCNGC 1 cut(s) 179
GsuI CTGGAG 1 cut(s) 359
HaeIII GGCC 2 cut(s) 80, 301
HgaI GACGC 1 cut(s) 184
Hin1II CATG 5 cut(s) 79, 98, 416, 544, 739
HinfI GANTC 6 cut(s) 149, 160, 229, 325, 530, 620
HphI GGTGA 1 cut(s) 653
Hpy188I TCNGA 3 cut(s) 192, 324, 726
Hpy188III TCNNGA 3 cut(s) 172, 461, 547
HpyAV CCTTC 5 cut(s) 101, 130, 406, 502, 632
HpyCH4V TGCA 7 cut(s) 6, 59, 68, 263, 349, 540, 659
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 86
HpyF3I CTNAG 3 cut(s) 158, 504, 597
Hsp92II CATG 5 cut(s) 79, 98, 416, 544, 739
Ksp22I TGATCA 1 cut(s) 699
Kzo9I GATC 4 cut(s) 422, 699, 718, 739
LguI GCTCTTC 1 cut(s) 639
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 3 cut(s) 121, 358, 440
MaeI CTAG 2 cut(s) 314, 372
MaeIII GTNAC 1 cut(s) 362
MalI GATC 4 cut(s) 424, 701, 720, 741
MboI GATC 4 cut(s) 422, 699, 718, 739
MboII GAAGA 6 cut(s) 23, 396, 525, 560, 656, 680
MhlI GDGCHC 2 cut(s) 201, 468
MluCI AATT 4 cut(s) 270, 574, 671, 709
MlyI GAGTC 2 cut(s) 158, 169
MnlI CCTC 3 cut(s) 115, 179, 201
MseI TTAA 1 cut(s) 273
MspR9I CCNGG 3 cut(s) 338, 583, 716
Mva1269I GAATGC 1 cut(s) 61
MvaI CCWGG 3 cut(s) 338, 583, 716
MwoI GCNNNNNNNGC 2 cut(s) 65, 86
NdeII GATC 4 cut(s) 422, 699, 718, 739
NlaIII CATG 5 cut(s) 79, 98, 416, 544, 739
NlaIV GGNNCC 1 cut(s) 379
NmeAIII GCCGAG 1 cut(s) 231
NspI RCATGY 1 cut(s) 544
PaeI GCATGC 1 cut(s) 544
PaeR7I CTCGAG 1 cut(s) 545
PciSI GCTCTTC 1 cut(s) 639
PctI GAATGC 1 cut(s) 61
PfeI GAWTC 4 cut(s) 229, 325, 530, 620
PfoI TCCNGGA 1 cut(s) 714
PkrI GCNGC 1 cut(s) 180
PleI GAGTC 2 cut(s) 157, 168
PpsI GAGTC 2 cut(s) 157, 168
PshBI ATTAAT 1 cut(s) 273
Psp6I CCWGG 3 cut(s) 336, 581, 714
PspGI CCWGG 3 cut(s) 336, 581, 714
PspN4I GGNNCC 1 cut(s) 379
PspPI GGNCC 1 cut(s) 680
RsaI GTAC 2 cut(s) 502, 522
RsaNI GTAC 2 cut(s) 501, 521
SapI GCTCTTC 1 cut(s) 639
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 1 cut(s) 179
Sau3AI GATC 4 cut(s) 422, 699, 718, 739
Sau96I GGNCC 1 cut(s) 680
ScaI AGTACT 1 cut(s) 502
SchI GAGTC 2 cut(s) 158, 169
ScrFI CCNGG 3 cut(s) 338, 583, 716
SduI GDGCHC 2 cut(s) 201, 468
SfaNI GCATC 3 cut(s) 121, 358, 440
Sfr274I CTCGAG 1 cut(s) 545
SinI GGWCC 1 cut(s) 680
SlaI CTCGAG 1 cut(s) 545
SmlI CTYRAG 2 cut(s) 461, 545
SmoI CTYRAG 2 cut(s) 461, 545
SphI GCATGC 1 cut(s) 544
Sse9I AATT 4 cut(s) 270, 574, 671, 709
SsiI CCGC 1 cut(s) 293
SspMI CTAG 2 cut(s) 314, 372
StyD4I CCNGG 3 cut(s) 336, 581, 714
TaqI TCGA 3 cut(s) 102, 421, 546
TasI AATT 4 cut(s) 270, 574, 671, 709
TatI WGTACW 2 cut(s) 500, 520
TfiI GAWTC 4 cut(s) 229, 325, 530, 620
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 2 cut(s) 231, 702
TseI GCWGC 1 cut(s) 178
TspDTI ATGAA 2 cut(s) 120, 282
TspRI CASTG 2 cut(s) 231, 702
VpaK11BI GGWCC 1 cut(s) 680
VspI ATTAAT 1 cut(s) 273
XapI RAATTY 2 cut(s) 574, 709
XceI RCATGY 1 cut(s) 544
XhoI CTCGAG 1 cut(s) 545
XspI CTAG 2 cut(s) 314, 372
ZrmI AGTACT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.