Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0010034

Physical Location & Seq

Genomic Coordinates Forward (+)

11512199 .. 11512642

Gene Structure 444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG155000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGAAGTTCCTGCTGAAGAAGATGATCCCTCATTAGATATCGGAGAGGAAGGGCCTGATAATGTATTTGACCTACTGTACAACCACAGGAAGGGGCATCAAAAATCAAAGTTGTTTTCTCTACTCTTGAGCCCAAACCAACTAATCATACTTTGTATCTTGGAAGTACTGAGAAGGTGGTTGAAGTACAAAAAGATTCTTCCTGCATGCTCGAGAATGATACTTGTTCAGGTCTTCCAAATTCAACCAGGGAGAGTGAGACTGAGAAGTGAGAAGTCTTATGTTCCTTTGGAATCCATATTCGGTAAAGAAGGTGAAGAGCTTTGTGTTGCAGAATGTGAAGAATTATATGGACCAGATAAATTAAGAACCACCGATCAAAAGAAATTAATTTCCAGGATCATCAGAAATACCACATGGATCAATAGATGCAGGTTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EloA-BP1 PHD zf-C3HC4_2 zf-RING_2

Protein Analysis

147

Amino Acids

17.12

Weight (kDa)

8.27

Isoelectric Point (pI)

55.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10910
fragaria_vesca	FvH4_5g04950
malus_domestica	MD06G1110100.v1.1 MD14G1131100.v1.1
prunus_persica	Prupe.5G123000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0194121
rosa_laevigata	RLG00000004095 RLG00000004216
rosa_multiflora	Rmu_co8264105.1_g000001 Rmu_sc0003314.1_g000019 Rmu_sc0003468.1_g000002 Rmu_sc0009433.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261540
rosa_rugosa	Rorug07G0013900
rosa_samantha	Rh7AG141000 Rh7BG141700 Rh7BG155000 Rh7BG155200 Rh7CG145100 Rh7DG142500
rosa_wichuraiana	Rw7G012060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	423
AclWI	GGATC	3 cut(s)	20, 407, 428
AcsI	RAATTY	1 cut(s)	240
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	3 cut(s)	80, 168, 188
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	184, 245
AjnI	CCWGG	2 cut(s)	247, 395
AluBI	AGCT	1 cut(s)	322
AluI	AGCT	1 cut(s)	322
Alw26I	GTCTC	1 cut(s)	253
AlwI	GGATC	3 cut(s)	20, 407, 428
Ama87I	CYCGRG	1 cut(s)	211
AoxI	GGCC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	240
AseI	ATTAAT	1 cut(s)	389
AspS9I	GGNCC	2 cut(s)	53, 353
AsuHPI	GGTGA	1 cut(s)	326
AvaI	CYCGRG	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	353
BanII	GRGCYC	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	226
BciT130I	CCWGG	2 cut(s)	249, 397
BcoDI	GTCTC	1 cut(s)	253
BfuAI	ACCTGC	1 cut(s)	423
BmcAI	AGTACT	1 cut(s)	168
Bme1390I	CCNGG	2 cut(s)	249, 397
Bme18I	GGWCC	1 cut(s)	353
BmeT110I	CYCGRG	1 cut(s)	211
BmgT120I	GGNCC	2 cut(s)	53, 353
BmrFI	CCNGG	2 cut(s)	249, 397
BmsI	GCATC	2 cut(s)	106, 419
BpiI	GAAGAC	1 cut(s)	226
BpuEI	CTTGAG	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
BseBI	CCWGG	2 cut(s)	249, 397
BseDI	CCNNGG	1 cut(s)	248
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMII	CTCAG	2 cut(s)	161, 254
BshFI	GGCC	1 cut(s)	55
BsiHKCI	CYCGRG	1 cut(s)	211
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	55
BsoBI	CYCGRG	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp1407I	TGTACA	1 cut(s)	78
Bsp143I	GATC	4 cut(s)	25, 376, 399, 420
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	2 cut(s)	162, 255
BspMI	ACCTGC	1 cut(s)	423
BspPI	GGATC	3 cut(s)	20, 407, 428
BspQI	GCTCTTC	1 cut(s)	312
BsrGI	TGTACA	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	248
BssMI	GATC	4 cut(s)	25, 376, 399, 420
Bst2UI	CCWGG	2 cut(s)	249, 397
Bst4CI	ACNGT	1 cut(s)	78
Bst6I	CTCTTC	1 cut(s)	312
BstAUI	TGTACA	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	2 cut(s)	170, 263
BstKTI	GATC	4 cut(s)	28, 379, 402, 423
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	4 cut(s)	25, 376, 399, 420
BstNI	CCWGG	2 cut(s)	249, 397
BstNSI	RCATGY	1 cut(s)	210
BstSCI	CCNGG	2 cut(s)	247, 395
BstV2I	GAAGAC	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	55
BveI	ACCTGC	1 cut(s)	423
Cac8I	GCNNGC	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	53, 353
Csp6I	GTAC	3 cut(s)	79, 167, 187
CviAII	CATG	2 cut(s)	207, 417
CviJI	RGCY	3 cut(s)	55, 132, 322
CviKI_1	RGCY	3 cut(s)	55, 132, 322
CviQI	GTAC	3 cut(s)	79, 167, 187
DdeI	CTNAG	2 cut(s)	170, 263
DpnI	GATC	4 cut(s)	27, 378, 401, 422
DpnII	GATC	4 cut(s)	25, 376, 399, 420
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
Eco24I	GRGCYC	1 cut(s)	134
Eco32I	GATATC	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	353
Eco57I	CTGAAG	1 cut(s)	36
Eco88I	CYCGRG	1 cut(s)	211
EcoO109I	RGGNCCY	1 cut(s)	53
EcoRII	CCWGG	2 cut(s)	247, 395
EcoRV	GATATC	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	134
FaeI	CATG	2 cut(s)	210, 420
FaiI	YATR	7 cut(s)	149, 208, 282, 299, 349, 351, 418
FatI	CATG	2 cut(s)	206, 416
FriOI	GRGCYC	1 cut(s)	134
HaeIII	GGCC	1 cut(s)	55
Hin1II	CATG	2 cut(s)	210, 420
HinfI	GANTC	2 cut(s)	196, 293
HphI	GGTGA	1 cut(s)	326
Hpy188I	TCNGA	2 cut(s)	44, 407
Hpy188III	TCNNGA	2 cut(s)	127, 213
HpyAV	CCTTC	4 cut(s)	44, 85, 168, 305
HpyCH4III	ACNGT	1 cut(s)	78
HpyCH4V	TGCA	3 cut(s)	206, 332, 432
HpyF3I	CTNAG	2 cut(s)	170, 263
Hsp92II	CATG	2 cut(s)	210, 420
Kzo9I	GATC	4 cut(s)	25, 376, 399, 420
LguI	GCTCTTC	1 cut(s)	312
LweI	GCATC	2 cut(s)	106, 419
MalI	GATC	4 cut(s)	27, 378, 401, 422
MboI	GATC	4 cut(s)	25, 376, 399, 420
MboII	GAAGA	6 cut(s)	29, 32, 191, 226, 329, 353
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	5 cut(s)	240, 344, 362, 386, 390
MnlI	CCTC	2 cut(s)	40, 40
MseI	TTAA	3 cut(s)	365, 389, 442
MspR9I	CCNGG	2 cut(s)	249, 397
MvaI	CCWGG	2 cut(s)	249, 397
NdeII	GATC	4 cut(s)	25, 376, 399, 420
NlaIII	CATG	2 cut(s)	210, 420
NspI	RCATGY	1 cut(s)	210
PaeI	GCATGC	1 cut(s)	210
PaeR7I	CTCGAG	1 cut(s)	211
PciSI	GCTCTTC	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	196, 293
PfoI	TCCNGGA	1 cut(s)	395
PshBI	ATTAAT	1 cut(s)	389
Psp6I	CCWGG	2 cut(s)	247, 395
PspGI	CCWGG	2 cut(s)	247, 395
PspPI	GGNCC	2 cut(s)	53, 353
RsaI	GTAC	3 cut(s)	80, 168, 188
RsaNI	GTAC	3 cut(s)	79, 167, 187
SapI	GCTCTTC	1 cut(s)	312
SaqAI	TTAA	3 cut(s)	365, 389, 442
Sau3AI	GATC	4 cut(s)	25, 376, 399, 420
Sau96I	GGNCC	2 cut(s)	53, 353
ScaI	AGTACT	1 cut(s)	168
ScrFI	CCNGG	2 cut(s)	249, 397
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	6 cut(s)	75, 179, 234, 316, 324, 437
SfaNI	GCATC	2 cut(s)	106, 419
Sfr274I	CTCGAG	1 cut(s)	211
SinI	GGWCC	1 cut(s)	353
SlaI	CTCGAG	1 cut(s)	211
SmlI	CTYRAG	2 cut(s)	127, 211
SmoI	CTYRAG	2 cut(s)	127, 211
SphI	GCATGC	1 cut(s)	210
Sse9I	AATT	5 cut(s)	240, 344, 362, 386, 390
StyD4I	CCNGG	2 cut(s)	247, 395
TaaI	ACNGT	1 cut(s)	78
TaqI	TCGA	1 cut(s)	212
TasI	AATT	5 cut(s)	240, 344, 362, 386, 390
TatI	WGTACW	3 cut(s)	78, 166, 186
TfiI	GAWTC	2 cut(s)	196, 293
Tru1I	TTAA	3 cut(s)	365, 389, 442
Tru9I	TTAA	3 cut(s)	365, 389, 442
VpaK11BI	GGWCC	1 cut(s)	353
VspI	ATTAAT	1 cut(s)	389
XapI	RAATTY	1 cut(s)	240
XceI	RCATGY	1 cut(s)	210
XhoI	CTCGAG	1 cut(s)	211
ZrmI	AGTACT	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.