Domain of unknown function (DUF4228)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G10910 |
| fragaria_vesca | FvH4_5g04950 |
| malus_domestica | MD06G1110100.v1.1 MD14G1131100.v1.1 |
| prunus_persica | Prupe.5G123000_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr7g0194121 |
| rosa_laevigata | RLG00000004095 RLG00000004216 |
| rosa_multiflora | Rmu_co8264105.1_g000001 Rmu_sc0003314.1_g000019 Rmu_sc0003468.1_g000002 Rmu_sc0009433.1_g000005 |
| rosa_roxburghii | Rroxscaffold_3G00261540 |
| rosa_rugosa | Rorug07G0013900 |
| rosa_samantha | Rh7AG141000 Rh7BG141700 Rh7BG155000 Rh7BG155200 Rh7CG145100 Rh7DG142500 |
| rosa_wichuraiana | Rw7G012060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 63 |
| AcuI | CTGAAG | 1 cut(s) | 90 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 107 |
| AluBI | AGCT | 1 cut(s) | 186 |
| AluI | AGCT | 1 cut(s) | 186 |
| AlwI | GGATC | 1 cut(s) | 63 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 181 |
| AoxI | GGCC | 1 cut(s) | 167 |
| ApeKI | GCWGC | 1 cut(s) | 175 |
| BbvCI | CCTCAGC | 1 cut(s) | 51 |
| BbvI | GCAGC | 1 cut(s) | 187 |
| BfaI | CTAG | 1 cut(s) | 224 |
| BglII | AGATCT | 1 cut(s) | 226 |
| BisI | GCNGC | 1 cut(s) | 176 |
| BlsI | GCNGC | 1 cut(s) | 177 |
| BmrI | ACTGGG | 1 cut(s) | 51 |
| BmsI | GCATC | 1 cut(s) | 99 |
| BmuI | ACTGGG | 1 cut(s) | 51 |
| Bpu10I | CCTNAGC | 1 cut(s) | 51 |
| BsaJI | CCNNGG | 1 cut(s) | 170 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 107 |
| Bse1I | ACTGG | 1 cut(s) | 46 |
| BseDI | CCNNGG | 1 cut(s) | 170 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 107 |
| BseMII | CTCAG | 4 cut(s) | 42, 73, 117, 173 |
| BseNI | ACTGG | 1 cut(s) | 46 |
| BseXI | GCAGC | 1 cut(s) | 187 |
| BshFI | GGCC | 1 cut(s) | 169 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 107 |
| BsnI | GGCC | 1 cut(s) | 169 |
| Bsp143I | GATC | 2 cut(s) | 55, 226 |
| BspANI | GGCC | 1 cut(s) | 169 |
| BspCNI | CTCAG | 4 cut(s) | 43, 72, 118, 174 |
| BspPI | GGATC | 1 cut(s) | 63 |
| BsrI | ACTGG | 1 cut(s) | 46 |
| BssECI | CCNNGG | 1 cut(s) | 170 |
| BssMI | GATC | 2 cut(s) | 55, 226 |
| BssT1I | CCWWGG | 1 cut(s) | 170 |
| Bst6I | CTCTTC | 1 cut(s) | 66 |
| BstDEI | CTNAG | 4 cut(s) | 51, 59, 126, 182 |
| BstKTI | GATC | 2 cut(s) | 58, 229 |
| BstMBI | GATC | 2 cut(s) | 55, 226 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 175 |
| BstV1I | GCAGC | 1 cut(s) | 187 |
| BstX2I | RGATCY | 2 cut(s) | 55, 226 |
| BstYI | RGATCY | 2 cut(s) | 55, 226 |
| BsuRI | GGCC | 1 cut(s) | 169 |
| BtsIMutI | CAGTG | 1 cut(s) | 179 |
| CaiI | CAGNNNCTG | 1 cut(s) | 181 |
| CviAII | CATG | 1 cut(s) | 143 |
| CviJI | RGCY | 6 cut(s) | 68, 96, 116, 169, 178, 186 |
| CviKI_1 | RGCY | 6 cut(s) | 68, 96, 116, 169, 178, 186 |
| DdeI | CTNAG | 4 cut(s) | 51, 59, 126, 182 |
| DpnI | GATC | 2 cut(s) | 57, 228 |
| DpnII | GATC | 2 cut(s) | 55, 226 |
| Eam1104I | CTCTTC | 1 cut(s) | 66 |
| EarI | CTCTTC | 1 cut(s) | 66 |
| Eco130I | CCWWGG | 1 cut(s) | 170 |
| Eco57I | CTGAAG | 1 cut(s) | 90 |
| EcoT14I | CCWWGG | 1 cut(s) | 170 |
| ErhI | CCWWGG | 1 cut(s) | 170 |
| FaeI | CATG | 1 cut(s) | 146 |
| FaiI | YATR | 2 cut(s) | 144, 210 |
| FatI | CATG | 1 cut(s) | 142 |
| Fnu4HI | GCNGC | 1 cut(s) | 176 |
| Fsp4HI | GCNGC | 1 cut(s) | 176 |
| FspBI | CTAG | 1 cut(s) | 224 |
| GluI | GCNGC | 1 cut(s) | 176 |
| HaeIII | GGCC | 1 cut(s) | 169 |
| Hin1II | CATG | 1 cut(s) | 146 |
| HinfI | GANTC | 1 cut(s) | 130 |
| Hpy188I | TCNGA | 1 cut(s) | 62 |
| Hpy188III | TCNNGA | 1 cut(s) | 134 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 175 |
| HpyF3I | CTNAG | 4 cut(s) | 51, 59, 126, 182 |
| Hsp92II | CATG | 1 cut(s) | 146 |
| Kzo9I | GATC | 2 cut(s) | 55, 226 |
| LmnI | GCTCC | 1 cut(s) | 158 |
| LpnPI | CCDG | 4 cut(s) | 27, 141, 147, 216 |
| Lsp1109I | GCAGC | 1 cut(s) | 187 |
| LweI | GCATC | 1 cut(s) | 99 |
| MaeI | CTAG | 1 cut(s) | 224 |
| MaeIII | GTNAC | 1 cut(s) | 37 |
| MalI | GATC | 2 cut(s) | 57, 228 |
| MboI | GATC | 2 cut(s) | 55, 226 |
| MboII | GAAGA | 2 cut(s) | 83, 227 |
| MflI | RGATCY | 2 cut(s) | 55, 226 |
| MluCI | AATT | 1 cut(s) | 79 |
| MnlI | CCTC | 3 cut(s) | 7, 46, 67 |
| MseI | TTAA | 1 cut(s) | 188 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 175 |
| NdeII | GATC | 2 cut(s) | 55, 226 |
| NlaIII | CATG | 1 cut(s) | 146 |
| PfeI | GAWTC | 1 cut(s) | 130 |
| PkrI | GCNGC | 1 cut(s) | 177 |
| PstNI | CAGNNNCTG | 1 cut(s) | 181 |
| PsuI | RGATCY | 2 cut(s) | 55, 226 |
| SaqAI | TTAA | 1 cut(s) | 188 |
| SatI | GCNGC | 1 cut(s) | 176 |
| Sau3AI | GATC | 2 cut(s) | 55, 226 |
| SetI | ASST | 1 cut(s) | 188 |
| SfaNI | GCATC | 1 cut(s) | 99 |
| Sse9I | AATT | 1 cut(s) | 79 |
| SspMI | CTAG | 1 cut(s) | 224 |
| StyI | CCWWGG | 1 cut(s) | 170 |
| TaqI | TCGA | 1 cut(s) | 122 |
| TasI | AATT | 1 cut(s) | 79 |
| TfiI | GAWTC | 1 cut(s) | 130 |
| Tru1I | TTAA | 1 cut(s) | 188 |
| Tru9I | TTAA | 1 cut(s) | 188 |
| TscAI | CASTG | 1 cut(s) | 186 |
| TseI | GCWGC | 1 cut(s) | 175 |
| TspDTI | ATGAA | 1 cut(s) | 72 |
| TspGWI | ACGGA | 1 cut(s) | 44 |
| TspRI | CASTG | 1 cut(s) | 186 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 104 |
| XspI | CTAG | 1 cut(s) | 224 |