RLG00000005424

Crossover junction endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0015755
Physical Location & Seq
Forward (+)
67562146 .. 67563365
1220 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005424

Sequence Viewer

Length: 306 bp
ATGGAGCGGCAGAAGCGGTTGGTGGTGTGCTCCGAGAATGAAGCGCTGGCAGAGGGTGTTGGGAAATGGATTTTGAAGCTTATGCAAGGGTATTTTGACACCGGTTCAGGCAGTTCTGAACCAGAAGATGTATCTAAAAAGGGTAAGAGAACCAAAGGAAGCAAACGCTATGTTCCACAAAAGAATTCTGTAGCATATGCTTTACTGATCACACTTTACAGGTCTTTTGCAATCCAGAGGCTCAAATGGGTTTCCATCCTGATGCAGGAGCTTCATATTATCTTTCTCGTCTACCTGGCTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000077 GO:0000228 GO:0000278 GO:0000280 GO:0000712 GO:0000724 GO:0000725 GO:0000727 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007093 GO:0007095 GO:0007127 GO:0007129 GO:0007131 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0016043 GO:0016787 GO:0016788 GO:0016889 GO:0016894 GO:0022402 GO:0022414 GO:0022607 GO:0031297 GO:0031570 GO:0031572 GO:0031573 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044773 GO:0044774 GO:0044818 GO:0045005 GO:0045132 GO:0045143 GO:0045786 GO:0045930 GO:0046483 GO:0048256 GO:0048257 GO:0048285 GO:0048476 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051026 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0051726 GO:0061982 GO:0065007 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903046 GO:1903047
KEGG Pathways
Metabolic & Signaling
ko03440 ko03460 map03440 map03460
Pfam Domains
Protein Families
ERCC4

Protein Analysis

102

Amino Acids

11.54

Weight (kDa)

9.72

Isoelectric Point (pI)

39.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 7
AccI GTMKAC 1 cut(s) 291
AciI CCGC 2 cut(s) 7, 16
AcsI RAATTY 1 cut(s) 184
AfeI AGCGCT 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 265
AgeI ACCGGT 1 cut(s) 101
AgsI TTSAA 1 cut(s) 76
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 2 cut(s) 79, 271
AluI AGCT 2 cut(s) 79, 271
Alw21I GWGCWC 1 cut(s) 32
Aor51HI AGCGCT 1 cut(s) 45
ApoI RAATTY 1 cut(s) 184
AsiGI ACCGGT 1 cut(s) 101
AspLEI GCGC 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 32
BccI CCATC 1 cut(s) 263
BciT130I CCWGG 1 cut(s) 296
BclI TGATCA 1 cut(s) 207
BfmI CTRYAG 1 cut(s) 189
BfoI RGCGCY 1 cut(s) 47
BisI GCNGC 1 cut(s) 8
BlsI GCNGC 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 296
BmrFI CCNGG 1 cut(s) 296
BmsI GCATC 1 cut(s) 252
BsaWI WCCGGW 1 cut(s) 101
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse118I RCCGGY 1 cut(s) 101
BseBI CCWGG 1 cut(s) 296
BseGI GGATG 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 265
BshTI ACCGGT 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 32
BsiSI CCGG 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 265
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 1 cut(s) 207
BspACI CCGC 2 cut(s) 7, 16
BsrBI CCGCTC 1 cut(s) 7
BsrFI RCCGGY 1 cut(s) 101
BssAI RCCGGY 1 cut(s) 101
BssMI GATC 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 1 cut(s) 303
BstENI CCTNNNNNAGG 1 cut(s) 263
BstF5I GGATG 1 cut(s) 255
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 1 cut(s) 210
BstMBI GATC 1 cut(s) 207
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstNI CCWGG 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 294
BstSFI CTRYAG 1 cut(s) 189
BtsCI GGATG 1 cut(s) 255
Cac8I GCNNGC 1 cut(s) 48
CfoI GCGC 1 cut(s) 46
Cfr10I RCCGGY 1 cut(s) 101
CspAI ACCGGT 1 cut(s) 101
CviJI RGCY 4 cut(s) 79, 241, 271, 299
CviKI_1 RGCY 4 cut(s) 79, 241, 271, 299
DdeI CTNAG 1 cut(s) 303
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
Eco47III AGCGCT 1 cut(s) 45
EcoNI CCTNNNNNAGG 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 294
FaiI YATR 5 cut(s) 83, 171, 196, 198, 276
FauNDI CATATG 1 cut(s) 196
FbaI TGATCA 1 cut(s) 207
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 1 cut(s) 8
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 8
GlaI GCGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 8
HaeII RGCGCY 1 cut(s) 47
HapII CCGG 1 cut(s) 102
HhaI GCGC 1 cut(s) 46
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HindIII AAGCTT 1 cut(s) 77
HpaII CCGG 1 cut(s) 102
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 2 cut(s) 34, 118
Hpy188III TCNNGA 2 cut(s) 235, 259
Hpy8I GTNNAC 1 cut(s) 292
HpyCH4V TGCA 3 cut(s) 85, 230, 265
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpyF3I CTNAG 1 cut(s) 303
HspAI GCGC 1 cut(s) 44
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 1 cut(s) 207
LmnI GCTCC 3 cut(s) 4, 35, 268
LpnPI CCDG 9 cut(s) 32, 93, 115, 135, 205, 248, 251, 272, 281
LweI GCATC 1 cut(s) 252
MalI GATC 1 cut(s) 209
MbiI CCGCTC 1 cut(s) 7
MboI GATC 1 cut(s) 207
MboII GAAGA 1 cut(s) 137
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 1 cut(s) 184
MnlI CCTC 2 cut(s) 46, 231
MslI CAYNNNNRTG 1 cut(s) 260
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 296
MvaI CCWGG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 13
NdeI CATATG 1 cut(s) 196
NdeII GATC 1 cut(s) 207
PinAI ACCGGT 1 cut(s) 101
PkrI GCNGC 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
RseI CAYNNNNRTG 1 cut(s) 260
SatI GCNGC 1 cut(s) 8
Sau3AI GATC 1 cut(s) 207
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 1 cut(s) 32
SetI ASST 4 cut(s) 81, 224, 273, 297
SfaNI GCATC 1 cut(s) 252
SfcI CTRYAG 1 cut(s) 189
SmiMI CAYNNNNRTG 1 cut(s) 260
Sse9I AATT 1 cut(s) 184
SsiI CCGC 2 cut(s) 7, 16
StyD4I CCNGG 1 cut(s) 294
TasI AATT 1 cut(s) 184
TauI GCSGC 1 cut(s) 10
TspDTI ATGAA 2 cut(s) 54, 263
XagI CCTNNNNNAGG 1 cut(s) 263
XapI RAATTY 1 cut(s) 184
XmiI GTMKAC 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.