Rh3DG243000

Crossover junction endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0015755
Physical Location & Seq
Reverse (-)
23410924 .. 23413565
2642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG243000.1

Sequence Viewer

Length: 606 bp
ATGCTTACAAATGATACAAGGGATTCTCTTTCACCAACATACTGCGTATGTAGTAGCAGCTCCTTTACTCTGCTTCAACTTCAAATGGGGACCTATTTAGTTCACACATTGACTGTCAAAACTGAGAGACAAGCCTGCCCTTATCACGATTCAATGGAGCGGCAGAAGCGGTTGGTGGTGTGCTCCGAGAATGAAGCGCTGGCAGAGTACATGTTGAGTAAGTGGCAGGAAATGGCAGACAAGAAGGCCAAAGGAATCTCTGAAAACATTGAAAAGACTCTTACCAAGGCATACTCCAATGTCTGCAACTCTAAGAATCCTGTTAAAACCCTTAAAGAGTTTTCCCAAATCAGGGGTGTTGGGAAATGGATTTTGAAGCTTATGCAAGGGTATTTTGACACCGGTTCAGGCAGTTCTGAACCAGAAGATGTAACTAAAAAGGGTAAGAGAACCAAAGGAAGCAAACGCTATGTTCCACAAAAGAATTCTGTAGCATATGATTTACTGATCACACTTTACAGGTCTTTTGCAATCCAGAGGCTCAAATGGGTTTCCATCCTGATGCAGGAGCTTCATATTATCTTTCTCGTCTACCTGGCTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000077 GO:0000228 GO:0000278 GO:0000280 GO:0000712 GO:0000724 GO:0000725 GO:0000727 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007093 GO:0007095 GO:0007127 GO:0007129 GO:0007131 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0016043 GO:0016787 GO:0016788 GO:0016889 GO:0016894 GO:0022402 GO:0022414 GO:0022607 GO:0031297 GO:0031570 GO:0031572 GO:0031573 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044773 GO:0044774 GO:0044818 GO:0045005 GO:0045132 GO:0045143 GO:0045786 GO:0045930 GO:0046483 GO:0048256 GO:0048257 GO:0048285 GO:0048476 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051026 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0051726 GO:0061982 GO:0065007 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903046 GO:1903047
KEGG Pathways
Metabolic & Signaling
ko03440 ko03460 map03440 map03460
Pfam Domains
Protein Families
ERCC4

Protein Analysis

201

Amino Acids

22.99

Weight (kDa)

9.35

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 160
AccI GTMKAC 1 cut(s) 591
AciI CCGC 2 cut(s) 160, 169
AcsI RAATTY 1 cut(s) 484
AfaI GTAC 1 cut(s) 209
AfeI AGCGCT 1 cut(s) 198
AfiI CCNNNNNNNGG 3 cut(s) 351, 352, 565
AflIII ACRYGT 1 cut(s) 210
AgeI ACCGGT 1 cut(s) 401
AgsI TTSAA 5 cut(s) 77, 83, 153, 272, 376
AjnI CCWGG 1 cut(s) 594
AluBI AGCT 3 cut(s) 60, 379, 571
AluI AGCT 3 cut(s) 60, 379, 571
Alw21I GWGCWC 1 cut(s) 185
Alw26I GTCTC 1 cut(s) 121
Aor51HI AGCGCT 1 cut(s) 198
AoxI GGCC 1 cut(s) 246
ApeKI GCWGC 1 cut(s) 57
ApoI RAATTY 1 cut(s) 484
AsiGI ACCGGT 1 cut(s) 401
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 1 cut(s) 90
AsuHPI GGTGA 1 cut(s) 24
AvaII GGWCC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 69
BccI CCATC 1 cut(s) 563
BciT130I CCWGG 1 cut(s) 596
BclI TGATCA 1 cut(s) 507
BcoDI GTCTC 1 cut(s) 121
BfmI CTRYAG 1 cut(s) 489
BfoI RGCGCY 1 cut(s) 200
BisI GCNGC 2 cut(s) 58, 161
BlsI GCNGC 2 cut(s) 59, 162
Bme1390I CCNGG 1 cut(s) 596
Bme18I GGWCC 1 cut(s) 90
BmgT120I GGNCC 1 cut(s) 90
BmiI GGNNCC 1 cut(s) 91
BmrFI CCNGG 1 cut(s) 596
BmsI GCATC 1 cut(s) 552
BsaJI CCNNGG 1 cut(s) 285
BsaWI WCCGGW 1 cut(s) 401
Bsc4I CCNNNNNNNGG 3 cut(s) 351, 352, 565
Bse118I RCCGGY 1 cut(s) 401
BseBI CCWGG 1 cut(s) 596
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 555
BseLI CCNNNNNNNGG 3 cut(s) 351, 352, 565
BseMII CTCAG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 69
BshFI GGCC 1 cut(s) 248
BshTI ACCGGT 1 cut(s) 401
BsiHKAI GWGCWC 1 cut(s) 185
BsiSI CCGG 1 cut(s) 402
BslFI GGGAC 1 cut(s) 103
BslI CCNNNNNNNGG 3 cut(s) 351, 352, 565
BsmAI GTCTC 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 103
BsnI GGCC 1 cut(s) 248
Bsp1286I GDGCHC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 507
BspACI CCGC 2 cut(s) 160, 169
BspANI GGCC 1 cut(s) 248
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 91
BsrBI CCGCTC 1 cut(s) 160
BsrFI RCCGGY 1 cut(s) 401
BssAI RCCGGY 1 cut(s) 401
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 1 cut(s) 507
BssT1I CCWWGG 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 596
Bst4CI ACNGT 1 cut(s) 115
BstC8I GCNNGC 2 cut(s) 136, 201
BstDEI CTNAG 3 cut(s) 123, 312, 603
BstENI CCTNNNNNAGG 1 cut(s) 563
BstF5I GGATG 1 cut(s) 555
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 1 cut(s) 510
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 1 cut(s) 507
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstNI CCWGG 1 cut(s) 596
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 1 cut(s) 594
BstSFI CTRYAG 1 cut(s) 489
BstV1I GCAGC 1 cut(s) 69
BsuRI GGCC 1 cut(s) 248
BtsCI GGATG 1 cut(s) 555
Cac8I GCNNGC 2 cut(s) 136, 201
CfoI GCGC 1 cut(s) 199
Cfr10I RCCGGY 1 cut(s) 401
Cfr13I GGNCC 1 cut(s) 90
Csp6I GTAC 1 cut(s) 208
CspAI ACCGGT 1 cut(s) 401
CviAII CATG 1 cut(s) 211
CviJI RGCY 7 cut(s) 60, 134, 248, 379, 541, 571, 599
CviKI_1 RGCY 7 cut(s) 60, 134, 248, 379, 541, 571, 599
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 3 cut(s) 123, 312, 603
DpnI GATC 1 cut(s) 509
DpnII GATC 1 cut(s) 507
Eco130I CCWWGG 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 90
Eco47III AGCGCT 1 cut(s) 198
EcoNI CCTNNNNNAGG 1 cut(s) 563
EcoO109I RGGNCCY 1 cut(s) 90
EcoRI GAATTC 1 cut(s) 484
EcoRII CCWGG 1 cut(s) 594
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 1 cut(s) 214
FaiI YATR 9 cut(s) 40, 49, 212, 292, 383, 471, 496, 498, 576
FaqI GGGAC 1 cut(s) 103
FatI CATG 1 cut(s) 210
FauNDI CATATG 1 cut(s) 496
FbaI TGATCA 1 cut(s) 507
FblI GTMKAC 1 cut(s) 591
Fnu4HI GCNGC 2 cut(s) 58, 161
FokI GGATG 1 cut(s) 542
Fsp4HI GCNGC 2 cut(s) 58, 161
GlaI GCGC 1 cut(s) 198
GluI GCNGC 2 cut(s) 58, 161
HaeII RGCGCY 1 cut(s) 200
HaeIII GGCC 1 cut(s) 248
HapII CCGG 1 cut(s) 402
HhaI GCGC 1 cut(s) 199
Hin1II CATG 1 cut(s) 214
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 5 cut(s) 23, 149, 255, 277, 316
HpaII CCGG 1 cut(s) 402
HphI GGTGA 1 cut(s) 24
Hpy166II GTNNAC 2 cut(s) 103, 592
Hpy188I TCNGA 3 cut(s) 187, 262, 418
Hpy188III TCNNGA 3 cut(s) 146, 535, 559
Hpy8I GTNNAC 2 cut(s) 103, 592
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 4 cut(s) 306, 385, 530, 565
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 3 cut(s) 123, 312, 603
Hsp92II CATG 1 cut(s) 214
HspAI GCGC 1 cut(s) 197
Ksp22I TGATCA 1 cut(s) 507
Kzo9I GATC 1 cut(s) 507
LmnI GCTCC 4 cut(s) 65, 157, 188, 568
Lsp1109I GCAGC 1 cut(s) 69
LweI GCATC 1 cut(s) 552
MaeIII GTNAC 1 cut(s) 430
MalI GATC 1 cut(s) 509
MbiI CCGCTC 1 cut(s) 160
MboI GATC 1 cut(s) 507
MboII GAAGA 1 cut(s) 437
MhlI GDGCHC 1 cut(s) 185
MluCI AATT 1 cut(s) 484
MlyI GAGTC 1 cut(s) 271
MnlI CCTC 1 cut(s) 531
MseI TTAA 2 cut(s) 324, 333
MslI CAYNNNNRTG 1 cut(s) 560
MspI CCGG 1 cut(s) 402
MspR9I CCNGG 1 cut(s) 596
MvaI CCWGG 1 cut(s) 596
MwoI GCNNNNNNNGC 1 cut(s) 166
NdeI CATATG 1 cut(s) 496
NdeII GATC 1 cut(s) 507
NlaIII CATG 1 cut(s) 214
NlaIV GGNNCC 1 cut(s) 91
NspI RCATGY 1 cut(s) 214
PciI ACATGT 1 cut(s) 210
PfeI GAWTC 4 cut(s) 23, 149, 255, 316
PinAI ACCGGT 1 cut(s) 401
PkrI GCNGC 2 cut(s) 59, 162
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PpuMI RGGWCCY 1 cut(s) 90
PscI ACATGT 1 cut(s) 210
Psp5II RGGWCCY 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 594
PspGI CCWGG 1 cut(s) 594
PspN4I GGNNCC 1 cut(s) 91
PspPI GGNCC 1 cut(s) 90
PspPPI RGGWCCY 1 cut(s) 90
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 560
SaqAI TTAA 2 cut(s) 324, 333
SatI GCNGC 2 cut(s) 58, 161
Sau3AI GATC 1 cut(s) 507
Sau96I GGNCC 1 cut(s) 90
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 1 cut(s) 596
SduI GDGCHC 1 cut(s) 185
SetI ASST 6 cut(s) 62, 95, 381, 524, 573, 597
SfaNI GCATC 1 cut(s) 552
SfcI CTRYAG 1 cut(s) 489
SinI GGWCC 1 cut(s) 90
SmiMI CAYNNNNRTG 1 cut(s) 560
Sse9I AATT 1 cut(s) 484
SsiI CCGC 2 cut(s) 160, 169
StyD4I CCNGG 1 cut(s) 594
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 1 cut(s) 115
TasI AATT 1 cut(s) 484
TatI WGTACW 1 cut(s) 207
TauI GCSGC 1 cut(s) 163
TfiI GAWTC 4 cut(s) 23, 149, 255, 316
Tru1I TTAA 2 cut(s) 324, 333
Tru9I TTAA 2 cut(s) 324, 333
TseI GCWGC 1 cut(s) 57
TspDTI ATGAA 2 cut(s) 207, 563
VpaK11BI GGWCC 1 cut(s) 90
XagI CCTNNNNNAGG 1 cut(s) 563
XapI RAATTY 1 cut(s) 484
XceI RCATGY 1 cut(s) 214
XmiI GTMKAC 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.