Rh1AG130400

Crossover junction endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0015755
Physical Location & Seq
Forward (+)
24561496 .. 24562716
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG130400.1

Sequence Viewer

Length: 453 bp
ATGGAGCGGCAGAAGCGGTTAGTGGTGTGCTCCGAGAATGAAGCGCTAGCAGAGTACATGTTGAGTAAGTGGCAGGAAATGGCAGATAAGAAGCCCAAAGGAATCTCTGAAAACATTGAAAAGACTCTTACCAAGGCATACTCTAATGTCTGCAACTCTAAGAATCCTGTTAAAACCCTCAAAGAGTTTTCCCAAATCAAGGGTGTTGGGAAATGGATTTTGAAGCTTATGCAAGGGTATTTTGACACCGGTTCAGGCAGTTCTGAACCAGAAGATGTAACTAAAAAGGGTAAGAGAACCAAAGGAAGCAAACGCTATGTTCCACAAAAGAATTCTGTAGCATATGCGTTACTGATCACACTTTACAGGTCTTTTGCAATCCAGAGGCTCAAATGGGTTTCCATCCTGATGCAGGAGCTTCATATTATCTTTCTCGTCTACCTGGCTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000077 GO:0000228 GO:0000278 GO:0000280 GO:0000712 GO:0000724 GO:0000725 GO:0000727 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007093 GO:0007095 GO:0007127 GO:0007129 GO:0007131 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0016043 GO:0016787 GO:0016788 GO:0016889 GO:0016894 GO:0022402 GO:0022414 GO:0022607 GO:0031297 GO:0031570 GO:0031572 GO:0031573 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044773 GO:0044774 GO:0044818 GO:0045005 GO:0045132 GO:0045143 GO:0045786 GO:0045930 GO:0046483 GO:0048256 GO:0048257 GO:0048285 GO:0048476 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051026 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0051726 GO:0061982 GO:0065007 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903046 GO:1903047
KEGG Pathways
Metabolic & Signaling
ko03440 ko03460 map03440 map03460
Pfam Domains
Protein Families
ERCC4

Protein Analysis

150

Amino Acids

17.22

Weight (kDa)

9.72

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 7
AccI GTMKAC 1 cut(s) 438
AciI CCGC 2 cut(s) 7, 16
AcsI RAATTY 1 cut(s) 331
AfaI GTAC 1 cut(s) 56
AfeI AGCGCT 1 cut(s) 45
AfiI CCNNNNNNNGG 2 cut(s) 199, 412
AflIII ACRYGT 1 cut(s) 57
AgeI ACCGGT 1 cut(s) 248
AgsI TTSAA 2 cut(s) 119, 223
AjnI CCWGG 1 cut(s) 441
AluBI AGCT 2 cut(s) 226, 418
AluI AGCT 2 cut(s) 226, 418
Alw21I GWGCWC 1 cut(s) 32
Aor51HI AGCGCT 1 cut(s) 45
ApoI RAATTY 1 cut(s) 331
AsiGI ACCGGT 1 cut(s) 248
AspLEI GCGC 1 cut(s) 46
AsuNHI GCTAGC 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 32
BccI CCATC 1 cut(s) 410
BciT130I CCWGG 1 cut(s) 443
BclI TGATCA 1 cut(s) 354
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 336
BfoI RGCGCY 1 cut(s) 47
BisI GCNGC 1 cut(s) 8
BlsI GCNGC 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 443
BmrFI CCNGG 1 cut(s) 443
BmsI GCATC 1 cut(s) 399
BmtI GCTAGC 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 248
Bsc4I CCNNNNNNNGG 2 cut(s) 199, 412
Bse118I RCCGGY 1 cut(s) 248
BseBI CCWGG 1 cut(s) 443
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 1 cut(s) 402
BseLI CCNNNNNNNGG 2 cut(s) 199, 412
BshTI ACCGGT 1 cut(s) 248
BsiHKAI GWGCWC 1 cut(s) 32
BsiSI CCGG 1 cut(s) 249
BslI CCNNNNNNNGG 2 cut(s) 199, 412
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 1 cut(s) 354
BspACI CCGC 2 cut(s) 7, 16
BspOI GCTAGC 1 cut(s) 50
BsrBI CCGCTC 1 cut(s) 7
BsrFI RCCGGY 1 cut(s) 248
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 443
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 2 cut(s) 159, 450
BstENI CCTNNNNNAGG 1 cut(s) 410
BstF5I GGATG 1 cut(s) 402
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 1 cut(s) 357
BstMBI GATC 1 cut(s) 354
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstNI CCWGG 1 cut(s) 443
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 441
BstSFI CTRYAG 1 cut(s) 336
BtsCI GGATG 1 cut(s) 402
Cac8I GCNNGC 1 cut(s) 48
CfoI GCGC 1 cut(s) 46
Cfr10I RCCGGY 1 cut(s) 248
Csp6I GTAC 1 cut(s) 55
CspAI ACCGGT 1 cut(s) 248
CviAII CATG 1 cut(s) 58
CviJI RGCY 5 cut(s) 94, 226, 388, 418, 446
CviKI_1 RGCY 5 cut(s) 94, 226, 388, 418, 446
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 2 cut(s) 159, 450
DpnI GATC 1 cut(s) 356
DpnII GATC 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 132
Eco47III AGCGCT 1 cut(s) 45
EcoNI CCTNNNNNAGG 1 cut(s) 410
EcoRI GAATTC 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 441
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 1 cut(s) 61
FaiI YATR 7 cut(s) 59, 139, 230, 318, 343, 345, 423
FatI CATG 1 cut(s) 57
FauNDI CATATG 1 cut(s) 343
FbaI TGATCA 1 cut(s) 354
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 1 cut(s) 8
FokI GGATG 1 cut(s) 389
Fsp4HI GCNGC 1 cut(s) 8
FspBI CTAG 1 cut(s) 47
GlaI GCGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 8
HaeII RGCGCY 1 cut(s) 47
HapII CCGG 1 cut(s) 249
HhaI GCGC 1 cut(s) 46
Hin1II CATG 1 cut(s) 61
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 3 cut(s) 102, 124, 163
HpaII CCGG 1 cut(s) 249
Hpy166II GTNNAC 1 cut(s) 439
Hpy188I TCNGA 3 cut(s) 34, 109, 265
Hpy188III TCNNGA 2 cut(s) 382, 406
Hpy8I GTNNAC 1 cut(s) 439
HpyCH4V TGCA 4 cut(s) 153, 232, 377, 412
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpyF3I CTNAG 2 cut(s) 159, 450
Hsp92II CATG 1 cut(s) 61
HspAI GCGC 1 cut(s) 44
Ksp22I TGATCA 1 cut(s) 354
Kzo9I GATC 1 cut(s) 354
LmnI GCTCC 3 cut(s) 4, 35, 415
LweI GCATC 1 cut(s) 399
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 2 cut(s) 277, 348
MalI GATC 1 cut(s) 356
MbiI CCGCTC 1 cut(s) 7
MboI GATC 1 cut(s) 354
MboII GAAGA 1 cut(s) 284
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 1 cut(s) 331
MlyI GAGTC 1 cut(s) 118
MnlI CCTC 2 cut(s) 188, 378
MseI TTAA 1 cut(s) 171
MslI CAYNNNNRTG 1 cut(s) 407
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 443
MvaI CCWGG 1 cut(s) 443
MwoI GCNNNNNNNGC 1 cut(s) 13
NdeI CATATG 1 cut(s) 343
NdeII GATC 1 cut(s) 354
NheI GCTAGC 1 cut(s) 46
NlaIII CATG 1 cut(s) 61
NspI RCATGY 1 cut(s) 61
PciI ACATGT 1 cut(s) 57
PfeI GAWTC 2 cut(s) 102, 163
PinAI ACCGGT 1 cut(s) 248
PkrI GCNGC 1 cut(s) 9
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PscI ACATGT 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 441
PspGI CCWGG 1 cut(s) 441
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
RseI CAYNNNNRTG 1 cut(s) 407
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 1 cut(s) 8
Sau3AI GATC 1 cut(s) 354
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 1 cut(s) 443
SduI GDGCHC 1 cut(s) 32
SetI ASST 4 cut(s) 228, 371, 420, 444
SfaNI GCATC 1 cut(s) 399
SfcI CTRYAG 1 cut(s) 336
SmiMI CAYNNNNRTG 1 cut(s) 407
Sse9I AATT 1 cut(s) 331
SsiI CCGC 2 cut(s) 7, 16
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 1 cut(s) 441
StyI CCWWGG 1 cut(s) 132
TasI AATT 1 cut(s) 331
TatI WGTACW 1 cut(s) 54
TauI GCSGC 1 cut(s) 10
TfiI GAWTC 2 cut(s) 102, 163
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TspDTI ATGAA 2 cut(s) 54, 410
XagI CCTNNNNNAGG 1 cut(s) 410
XapI RAATTY 1 cut(s) 331
XceI RCATGY 1 cut(s) 61
XmiI GTMKAC 1 cut(s) 438
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.