Rh5BG451900

Crossover junction endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0015755
Physical Location & Seq
Reverse (-)
72542271 .. 72545440
3170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG451900.1

Sequence Viewer

Length: 612 bp
ATGGAAACCTCCTACACCGTCAACAACAAGCCTCCAATCAAAGAGATCGCTCTCGCCATTGCCCTTCTCGTCCTTGGCATTGTCGTCGGCTCCCTCATGGCCTATAACCGCGTCGGCGGCGACAAAGCTCACAGAATGTTCTTTGCGATTCTTGGTGGGATATTCAGCAGCTCCTTTACTCTGCTTCAACTTCAAATGGGGACCTATTTAGTTCACACATTGACTGTCAAAACTGAGAGACAAGCCTGCCCTTATCACGATTCAATGGAGCGGCAGAAGCGGTTGGTGGTGTGCTCCGAGAATGAAGCGCTGGCAGAGTACATGTTGAGTAAGTGGCAGGAAATGGCAGACAAGAAGTCCAAAGGAATCTCTGAAAACATTGAAAAGACTCTTACCAAGGCATATTCCAATGTCTGCAACTCTAAGAATCCTGTTAAAACCCTCAAAGAGTTTTCCCAAATCAAGGGTGTTGGGAAATGGATTTTGAAGCTTATGCAAGGGTATTTTGACACCGGTTCAGGCAGTTCTGAACCAGAAGATGTAACTAAAAAGGGAGAATACTTAGCTCTTACAGGGGATAAGCTTAATGGTGCAGGAGAATACTTAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000077 GO:0000228 GO:0000278 GO:0000280 GO:0000712 GO:0000724 GO:0000725 GO:0000727 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007093 GO:0007095 GO:0007127 GO:0007129 GO:0007131 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0016043 GO:0016787 GO:0016788 GO:0016889 GO:0016894 GO:0022402 GO:0022414 GO:0022607 GO:0031297 GO:0031570 GO:0031572 GO:0031573 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044773 GO:0044774 GO:0044818 GO:0045005 GO:0045132 GO:0045143 GO:0045786 GO:0045930 GO:0046483 GO:0048256 GO:0048257 GO:0048285 GO:0048476 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051026 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0051726 GO:0061982 GO:0065007 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903046 GO:1903047
KEGG Pathways
Metabolic & Signaling
ko03440 ko03460 map03440 map03460
Pfam Domains
Protein Families
ERCC4

Protein Analysis

203

Amino Acids

22.48

Weight (kDa)

8.82

Isoelectric Point (pI)

32.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 271
AccII CGCG 1 cut(s) 111
AciI CCGC 4 cut(s) 109, 117, 271, 280
AfaI GTAC 1 cut(s) 320
AfeI AGCGCT 1 cut(s) 309
AfiI CCNNNNNNNGG 1 cut(s) 463
AflIII ACRYGT 1 cut(s) 321
AgeI ACCGGT 1 cut(s) 512
AgsI TTSAA 5 cut(s) 188, 194, 264, 383, 487
AhdI GACNNNNNGTC 1 cut(s) 355
AluBI AGCT 5 cut(s) 128, 171, 490, 566, 583
AluI AGCT 5 cut(s) 128, 171, 490, 566, 583
Alw21I GWGCWC 1 cut(s) 296
Alw26I GTCTC 1 cut(s) 232
Aor51HI AGCGCT 1 cut(s) 309
AoxI GGCC 1 cut(s) 99
ApeKI GCWGC 1 cut(s) 168
AsiGI ACCGGT 1 cut(s) 512
AspLEI GCGC 1 cut(s) 310
AspS9I GGNCC 1 cut(s) 201
AvaII GGWCC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 296
BbvI GCAGC 1 cut(s) 180
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BcoDI GTCTC 1 cut(s) 232
BfoI RGCGCY 1 cut(s) 311
BisI GCNGC 3 cut(s) 118, 169, 272
BlsI GCNGC 3 cut(s) 119, 170, 273
Bme18I GGWCC 1 cut(s) 201
BmeRI GACNNNNNGTC 1 cut(s) 355
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 2 cut(s) 91, 202
BsaJI CCNNGG 2 cut(s) 73, 396
BsaWI WCCGGW 1 cut(s) 512
Bsc4I CCNNNNNNNGG 1 cut(s) 463
Bse118I RCCGGY 1 cut(s) 512
Bse3DI GCAATG 1 cut(s) 57
BseDI CCNNGG 2 cut(s) 73, 396
BseLI CCNNNNNNNGG 1 cut(s) 463
BseMI GCAATG 1 cut(s) 57
BseMII CTCAG 1 cut(s) 225
BseXI GCAGC 1 cut(s) 180
BsgI GTGCAG 1 cut(s) 612
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 1 cut(s) 101
BshTI ACCGGT 1 cut(s) 512
BsiHKAI GWGCWC 1 cut(s) 296
BsiSI CCGG 1 cut(s) 513
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 463
BsmAI GTCTC 1 cut(s) 232
BsmFI GGGAC 1 cut(s) 214
BsnI GGCC 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 296
Bsp143I GATC 1 cut(s) 45
BspACI CCGC 4 cut(s) 109, 117, 271, 280
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 226
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 2 cut(s) 91, 202
BsrBI CCGCTC 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 57
BsrFI RCCGGY 1 cut(s) 512
BssAI RCCGGY 1 cut(s) 512
BssECI CCNNGG 2 cut(s) 73, 396
BssMI GATC 1 cut(s) 45
BssT1I CCWWGG 2 cut(s) 73, 396
Bst4CI ACNGT 2 cut(s) 19, 226
BstC8I GCNNGC 2 cut(s) 247, 312
BstDEI CTNAG 4 cut(s) 234, 423, 562, 604
BstFNI CGCG 1 cut(s) 111
BstH2I RGCGCY 1 cut(s) 311
BstHHI GCGC 1 cut(s) 310
BstKTI GATC 1 cut(s) 48
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 2 cut(s) 117, 277
BstNSI RCATGY 1 cut(s) 325
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 180
BsuRI GGCC 1 cut(s) 101
Cac8I GCNNGC 2 cut(s) 247, 312
CfoI GCGC 1 cut(s) 310
Cfr10I RCCGGY 1 cut(s) 512
Cfr13I GGNCC 1 cut(s) 201
CseI GACGC 1 cut(s) 100
Csp6I GTAC 1 cut(s) 319
CspAI ACCGGT 1 cut(s) 512
CviAII CATG 2 cut(s) 97, 322
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 4 cut(s) 234, 423, 562, 604
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
DriI GACNNNNNGTC 1 cut(s) 355
Eam1105I GACNNNNNGTC 1 cut(s) 355
Eco130I CCWWGG 2 cut(s) 73, 396
Eco47I GGWCC 1 cut(s) 201
Eco47III AGCGCT 1 cut(s) 309
EcoO109I RGGNCCY 1 cut(s) 201
EcoT14I CCWWGG 2 cut(s) 73, 396
ErhI CCWWGG 2 cut(s) 73, 396
FaeI CATG 2 cut(s) 100, 325
FaiI YATR 5 cut(s) 98, 105, 323, 403, 494
FaqI GGGAC 1 cut(s) 214
FatI CATG 2 cut(s) 96, 321
Fnu4HI GCNGC 3 cut(s) 118, 169, 272
Fsp4HI GCNGC 3 cut(s) 118, 169, 272
GlaI GCGC 1 cut(s) 309
GluI GCNGC 3 cut(s) 118, 169, 272
HaeII RGCGCY 1 cut(s) 311
HaeIII GGCC 1 cut(s) 101
HapII CCGG 1 cut(s) 513
HgaI GACGC 1 cut(s) 100
HhaI GCGC 1 cut(s) 310
Hin1II CATG 2 cut(s) 100, 325
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HindIII AAGCTT 2 cut(s) 488, 581
HinfI GANTC 5 cut(s) 148, 260, 366, 388, 427
HpaII CCGG 1 cut(s) 513
Hpy166II GTNNAC 2 cut(s) 22, 214
Hpy188I TCNGA 3 cut(s) 298, 373, 529
Hpy188III TCNNGA 1 cut(s) 257
Hpy8I GTNNAC 2 cut(s) 22, 214
Hpy99I CGWCG 2 cut(s) 89, 116
HpyAV CCTTC 1 cut(s) 74
HpyCH4III ACNGT 2 cut(s) 19, 226
HpyCH4V TGCA 3 cut(s) 417, 496, 593
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 277
HpyF3I CTNAG 4 cut(s) 234, 423, 562, 604
Hsp92II CATG 2 cut(s) 100, 325
HspAI GCGC 1 cut(s) 308
Kzo9I GATC 1 cut(s) 45
LmnI GCTCC 4 cut(s) 95, 176, 268, 299
LpnPI CCDG 9 cut(s) 259, 296, 323, 444, 504, 526, 546, 558, 579
Lsp1109I GCAGC 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 541
MalI GATC 1 cut(s) 47
MbiI CCGCTC 1 cut(s) 271
MboI GATC 1 cut(s) 45
MboII GAAGA 1 cut(s) 548
MhlI GDGCHC 1 cut(s) 296
MlyI GAGTC 1 cut(s) 382
MnlI CCTC 4 cut(s) 19, 42, 104, 452
MseI TTAA 2 cut(s) 435, 585
MspI CCGG 1 cut(s) 513
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 2 cut(s) 117, 277
NdeII GATC 1 cut(s) 45
NlaIII CATG 2 cut(s) 100, 325
NlaIV GGNNCC 2 cut(s) 91, 202
NspI RCATGY 1 cut(s) 325
PciI ACATGT 1 cut(s) 321
PfeI GAWTC 4 cut(s) 148, 260, 366, 427
PinAI ACCGGT 1 cut(s) 512
PkrI GCNGC 3 cut(s) 119, 170, 273
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
PpuMI RGGWCCY 1 cut(s) 201
PscI ACATGT 1 cut(s) 321
Psp5II RGGWCCY 1 cut(s) 201
PspN4I GGNNCC 2 cut(s) 91, 202
PspPI GGNCC 1 cut(s) 201
PspPPI RGGWCCY 1 cut(s) 201
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SaqAI TTAA 2 cut(s) 435, 585
SatI GCNGC 3 cut(s) 118, 169, 272
Sau3AI GATC 1 cut(s) 45
Sau96I GGNCC 1 cut(s) 201
SchI GAGTC 1 cut(s) 382
SduI GDGCHC 1 cut(s) 296
SetI ASST 7 cut(s) 11, 130, 173, 206, 492, 568, 585
SinI GGWCC 1 cut(s) 201
SsiI CCGC 4 cut(s) 109, 117, 271, 280
StyI CCWWGG 2 cut(s) 73, 396
TaaI ACNGT 2 cut(s) 19, 226
TatI WGTACW 1 cut(s) 318
TauI GCSGC 2 cut(s) 120, 274
TfiI GAWTC 4 cut(s) 148, 260, 366, 427
Tru1I TTAA 2 cut(s) 435, 585
Tru9I TTAA 2 cut(s) 435, 585
TseI GCWGC 1 cut(s) 168
TspDTI ATGAA 1 cut(s) 318
VpaK11BI GGWCC 1 cut(s) 201
XceI RCATGY 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.