Rh4AG101100

Crossover junction endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0015755
Physical Location & Seq
Reverse (-)
21501431 .. 21503017
1587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG101100.1

Sequence Viewer

Length: 549 bp
ATGTTAAGGGGGACCTATTTAGTTCACACATTGACTGTCAAAACTGAGAGACAAGCCTGCCCTTATCACGATTCAATGGAGCGGCAGAAGCTGTTGGTGGTGTGCTCCGAGAATGAAGCTCTGGCAGAGTACATGTTGAGTAAGTGGCAGGAAATGGCAGACAAGAAGCCCAAAGGAATCTCTGAAAACATTGAAAAGACTCTTACCAAGGCATACTCCAATGTCTGCAACTCTAAGAATCCTGTTAAAACCCTCAAAGAGTTTTCCCAAATCAAACGTTTTGAATTTTTTAATGAGGGTGTTGGGAAATGGATTTTGAAGCTTATGCAAGGGTATTTTGACACCGGTTCAGGCAGTTCTGAACCAGAAGATGTAACTAAAAAGGGTAAGAGAACCAAAGGAAGCAAACGCTATGTTCCACAAAAGAATTCTGTAGCATATGCTTTACTTATCACACTTTACAGGTCTTTTGCAATCCAGAGGCTCAAATGGGTTTCCATCCTGATGCAGGAGCTTCATATTATGTTTCTCGTCTACCTGGCTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000077 GO:0000228 GO:0000278 GO:0000280 GO:0000712 GO:0000724 GO:0000725 GO:0000727 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007093 GO:0007095 GO:0007127 GO:0007129 GO:0007131 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0016043 GO:0016787 GO:0016788 GO:0016889 GO:0016894 GO:0022402 GO:0022414 GO:0022607 GO:0031297 GO:0031570 GO:0031572 GO:0031573 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044773 GO:0044774 GO:0044818 GO:0045005 GO:0045132 GO:0045143 GO:0045786 GO:0045930 GO:0046483 GO:0048256 GO:0048257 GO:0048285 GO:0048476 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051026 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0051726 GO:0061982 GO:0065007 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903046 GO:1903047
KEGG Pathways
Metabolic & Signaling
ko03440 ko03460 map03440 map03460
Pfam Domains
Protein Families
ERCC4

Protein Analysis

182

Amino Acids

21.06

Weight (kDa)

9.53

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 82
AccI GTMKAC 1 cut(s) 534
AciI CCGC 1 cut(s) 82
AclI AACGTT 1 cut(s) 277
AcsI RAATTY 2 cut(s) 284, 427
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 508
AflIII ACRYGT 1 cut(s) 132
AgeI ACCGGT 1 cut(s) 344
AgsI TTSAA 4 cut(s) 75, 194, 284, 319
AjnI CCWGG 1 cut(s) 537
AluBI AGCT 4 cut(s) 91, 119, 322, 514
AluI AGCT 4 cut(s) 91, 119, 322, 514
Alw21I GWGCWC 1 cut(s) 107
Alw26I GTCTC 1 cut(s) 43
AlwNI CAGNNNCTG 1 cut(s) 91
ApoI RAATTY 2 cut(s) 284, 427
AsiGI ACCGGT 1 cut(s) 344
AspS9I GGNCC 1 cut(s) 12
AvaII GGWCC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 107
BccI CCATC 1 cut(s) 506
BciT130I CCWGG 1 cut(s) 539
BcoDI GTCTC 1 cut(s) 43
BfmI CTRYAG 1 cut(s) 432
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
Bme1390I CCNGG 1 cut(s) 539
Bme18I GGWCC 1 cut(s) 12
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 1 cut(s) 13
BmrFI CCNGG 1 cut(s) 539
BmsI GCATC 1 cut(s) 495
BsaJI CCNNGG 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 344
Bsc4I CCNNNNNNNGG 1 cut(s) 508
Bse118I RCCGGY 1 cut(s) 344
BseBI CCWGG 1 cut(s) 539
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 498
BseLI CCNNNNNNNGG 1 cut(s) 508
BseMII CTCAG 1 cut(s) 36
BshTI ACCGGT 1 cut(s) 344
BsiHKAI GWGCWC 1 cut(s) 107
BsiSI CCGG 1 cut(s) 345
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 508
BsmAI GTCTC 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 107
BspACI CCGC 1 cut(s) 82
BspCNI CTCAG 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 13
BsrBI CCGCTC 1 cut(s) 82
BsrFI RCCGGY 1 cut(s) 344
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 539
Bst4CI ACNGT 1 cut(s) 37
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 3 cut(s) 45, 234, 546
BstENI CCTNNNNNAGG 1 cut(s) 506
BstF5I GGATG 1 cut(s) 498
BstMAI GTCTC 1 cut(s) 43
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstNI CCWGG 1 cut(s) 539
BstNSI RCATGY 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 537
BstSFI CTRYAG 1 cut(s) 432
BtsCI GGATG 1 cut(s) 498
Cac8I GCNNGC 1 cut(s) 58
CaiI CAGNNNCTG 1 cut(s) 91
Cfr10I RCCGGY 1 cut(s) 344
Cfr13I GGNCC 1 cut(s) 12
Csp6I GTAC 1 cut(s) 130
CspAI ACCGGT 1 cut(s) 344
CviAII CATG 1 cut(s) 133
CviJI RGCY 8 cut(s) 56, 91, 119, 169, 322, 484, 514, 542
CviKI_1 RGCY 8 cut(s) 56, 91, 119, 169, 322, 484, 514, 542
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 3 cut(s) 45, 234, 546
Eco130I CCWWGG 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 12
EcoNI CCTNNNNNAGG 1 cut(s) 506
EcoO109I RGGNCCY 1 cut(s) 12
EcoRI GAATTC 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 537
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 1 cut(s) 136
FaiI YATR 8 cut(s) 134, 214, 326, 414, 439, 441, 519, 524
FaqI GGGAC 1 cut(s) 25
FatI CATG 1 cut(s) 132
FauNDI CATATG 1 cut(s) 439
FblI GTMKAC 1 cut(s) 534
Fnu4HI GCNGC 1 cut(s) 83
FokI GGATG 1 cut(s) 485
Fsp4HI GCNGC 1 cut(s) 83
GluI GCNGC 1 cut(s) 83
HapII CCGG 1 cut(s) 345
Hin1II CATG 1 cut(s) 136
HindIII AAGCTT 1 cut(s) 320
HinfI GANTC 4 cut(s) 71, 177, 199, 238
HpaII CCGG 1 cut(s) 345
Hpy166II GTNNAC 2 cut(s) 25, 535
Hpy188I TCNGA 3 cut(s) 109, 184, 361
Hpy188III TCNNGA 3 cut(s) 68, 478, 502
Hpy8I GTNNAC 2 cut(s) 25, 535
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 4 cut(s) 228, 328, 473, 508
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpyF3I CTNAG 3 cut(s) 45, 234, 546
HpySE526I ACGT 1 cut(s) 277
Hsp92II CATG 1 cut(s) 136
LmnI GCTCC 3 cut(s) 79, 110, 511
LweI GCATC 1 cut(s) 495
MaeII ACGT 1 cut(s) 277
MaeIII GTNAC 1 cut(s) 373
MbiI CCGCTC 1 cut(s) 82
MboII GAAGA 1 cut(s) 380
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 2 cut(s) 284, 427
MlyI GAGTC 1 cut(s) 193
MnlI CCTC 3 cut(s) 263, 289, 474
MseI TTAA 3 cut(s) 5, 246, 291
MslI CAYNNNNRTG 1 cut(s) 503
MspI CCGG 1 cut(s) 345
MspR9I CCNGG 1 cut(s) 539
MvaI CCWGG 1 cut(s) 539
MwoI GCNNNNNNNGC 1 cut(s) 88
NdeI CATATG 1 cut(s) 439
NlaIII CATG 1 cut(s) 136
NlaIV GGNNCC 1 cut(s) 13
NspI RCATGY 1 cut(s) 136
PciI ACATGT 1 cut(s) 132
PfeI GAWTC 3 cut(s) 71, 177, 238
PinAI ACCGGT 1 cut(s) 344
PkrI GCNGC 1 cut(s) 84
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PpuMI RGGWCCY 1 cut(s) 12
PscI ACATGT 1 cut(s) 132
Psp1406I AACGTT 1 cut(s) 277
Psp5II RGGWCCY 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 537
PspGI CCWGG 1 cut(s) 537
PspN4I GGNNCC 1 cut(s) 13
PspPI GGNCC 1 cut(s) 12
PspPPI RGGWCCY 1 cut(s) 12
PstNI CAGNNNCTG 1 cut(s) 91
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
RseI CAYNNNNRTG 1 cut(s) 503
SaqAI TTAA 3 cut(s) 5, 246, 291
SatI GCNGC 1 cut(s) 83
Sau96I GGNCC 1 cut(s) 12
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 1 cut(s) 539
SduI GDGCHC 1 cut(s) 107
SetI ASST 8 cut(s) 17, 93, 121, 280, 324, 467, 516, 540
SfaNI GCATC 1 cut(s) 495
SfcI CTRYAG 1 cut(s) 432
SinI GGWCC 1 cut(s) 12
SmiMI CAYNNNNRTG 1 cut(s) 503
Sse9I AATT 2 cut(s) 284, 427
SsiI CCGC 1 cut(s) 82
StyD4I CCNGG 1 cut(s) 537
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 280
TasI AATT 2 cut(s) 284, 427
TatI WGTACW 1 cut(s) 129
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 3 cut(s) 71, 177, 238
Tru1I TTAA 3 cut(s) 5, 246, 291
Tru9I TTAA 3 cut(s) 5, 246, 291
TspDTI ATGAA 2 cut(s) 129, 506
VpaK11BI GGWCC 1 cut(s) 12
XagI CCTNNNNNAGG 1 cut(s) 506
XapI RAATTY 2 cut(s) 284, 427
XceI RCATGY 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.