Rh4AG173000

Crossover junction endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0015755
Physical Location & Seq
Forward (+)
43408159 .. 43412016
3858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG173000.1

Sequence Viewer

Length: 618 bp
ATGTTAAGGGGGACCTATTTAGTTCACACATTGACTGTCAAAACTGAGAGACAAGCCTGCCCTTATCACGATTCAGTGGAGCCGCAGAAGCGGTTGGTGGTGTGCTCCGAGAATGAAGCGCTGGCAGAGTACATGTTGAGTAAGTGGCAGGAAATGGCAGACAAGAAGCCCAAAGGAATCTCTGAAAACATTGAAAAGACTCTTACCAAGGCATACTCCAATGTCTGCAACTTTAAGAATCCTGTTAAAACCCTCAAAGAGTTTTCCCAACTCAAGGGTGTTGGGAAATGGATTTTGAAGCTTATGCAAGGGTATTTTGACACCGGTTCAGGCAGTTCTGAACCAGAAGATGTAACTAAAAAGGGTACGTCTTTCTTATTTCCTTGGCTTTACACTCTCTGTTTTCATGAATCGCATTGTATATTCCTTCTTGTTGCTGTCCATTATGGACTTGTTCTTTTATTAGGTAAGAGAACCAAAGGAAGCAAACGCTATGTTCCACAAAAGAATTCTGTAGCATATGCTTTACTGATCACACTTTACATGTTCTTTCATGTCCGTGACTGCTGCTTACATAATGAACGAGTTTCACCAGTGGTTCTGTTTTGTTTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000077 GO:0000228 GO:0000278 GO:0000280 GO:0000712 GO:0000724 GO:0000725 GO:0000727 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007093 GO:0007095 GO:0007127 GO:0007129 GO:0007131 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0016043 GO:0016787 GO:0016788 GO:0016889 GO:0016894 GO:0022402 GO:0022414 GO:0022607 GO:0031297 GO:0031570 GO:0031572 GO:0031573 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044773 GO:0044774 GO:0044818 GO:0045005 GO:0045132 GO:0045143 GO:0045786 GO:0045930 GO:0046483 GO:0048256 GO:0048257 GO:0048285 GO:0048476 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051026 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0051726 GO:0061982 GO:0065007 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903046 GO:1903047
KEGG Pathways
Metabolic & Signaling
ko03440 ko03460 map03440 map03460
Pfam Domains
Protein Families
ERCC4

Protein Analysis

205

Amino Acids

23.53

Weight (kDa)

9.19

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 83, 91
AcsI RAATTY 1 cut(s) 508
AfaI GTAC 2 cut(s) 131, 367
AfeI AGCGCT 1 cut(s) 120
AfiI CCNNNNNNNGG 1 cut(s) 274
AflIII ACRYGT 2 cut(s) 132, 543
AgeI ACCGGT 1 cut(s) 323
AgsI TTSAA 3 cut(s) 194, 298, 613
AluBI AGCT 1 cut(s) 301
AluI AGCT 1 cut(s) 301
Alw21I GWGCWC 1 cut(s) 107
Alw26I GTCTC 1 cut(s) 43
Aor51HI AGCGCT 1 cut(s) 120
ApeKI GCWGC 1 cut(s) 567
ApoI RAATTY 1 cut(s) 508
AsiGI ACCGGT 1 cut(s) 323
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 582
AvaII GGWCC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 107
BbvI GCAGC 1 cut(s) 554
BclI TGATCA 1 cut(s) 531
BcoDI GTCTC 1 cut(s) 43
BfmI CTRYAG 1 cut(s) 513
BfoI RGCGCY 1 cut(s) 122
BisI GCNGC 2 cut(s) 83, 568
BlsI GCNGC 2 cut(s) 84, 569
Bme18I GGWCC 1 cut(s) 12
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 2 cut(s) 13, 81
BpuEI CTTGAG 1 cut(s) 257
BsaJI CCNNGG 2 cut(s) 207, 383
BsaWI WCCGGW 1 cut(s) 323
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse118I RCCGGY 1 cut(s) 323
Bse1I ACTGG 1 cut(s) 593
BseDI CCNNGG 2 cut(s) 207, 383
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 1 cut(s) 593
BseXI GCAGC 1 cut(s) 554
BshTI ACCGGT 1 cut(s) 323
BsiHKAI GWGCWC 1 cut(s) 107
BsiSI CCGG 1 cut(s) 324
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 1 cut(s) 531
BspACI CCGC 2 cut(s) 83, 91
BspCNI CTCAG 1 cut(s) 37
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 2 cut(s) 13, 81
BsrFI RCCGGY 1 cut(s) 323
BsrI ACTGG 1 cut(s) 593
BssAI RCCGGY 1 cut(s) 323
BssECI CCNNGG 2 cut(s) 207, 383
BssMI GATC 1 cut(s) 531
BssT1I CCWWGG 2 cut(s) 207, 383
Bst4CI ACNGT 1 cut(s) 37
BstC8I GCNNGC 2 cut(s) 58, 123
BstDEI CTNAG 1 cut(s) 45
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 1 cut(s) 534
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 1 cut(s) 531
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstNSI RCATGY 2 cut(s) 136, 547
BstSFI CTRYAG 1 cut(s) 513
BstV1I GCAGC 1 cut(s) 554
BtsIMutI CAGTG 2 cut(s) 81, 600
Cac8I GCNNGC 2 cut(s) 58, 123
CciI TCATGA 1 cut(s) 406
CfoI GCGC 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 323
Cfr13I GGNCC 1 cut(s) 12
Csp6I GTAC 2 cut(s) 130, 366
CspAI ACCGGT 1 cut(s) 323
CviAII CATG 4 cut(s) 133, 407, 544, 554
CviJI RGCY 5 cut(s) 56, 82, 169, 301, 388
CviKI_1 RGCY 5 cut(s) 56, 82, 169, 301, 388
CviQI GTAC 2 cut(s) 130, 366
DdeI CTNAG 1 cut(s) 45
DpnI GATC 1 cut(s) 533
DpnII GATC 1 cut(s) 531
Eco130I CCWWGG 2 cut(s) 207, 383
Eco47I GGWCC 1 cut(s) 12
Eco47III AGCGCT 1 cut(s) 120
EcoO109I RGGNCCY 1 cut(s) 12
EcoRI GAATTC 1 cut(s) 508
EcoT14I CCWWGG 2 cut(s) 207, 383
ErhI CCWWGG 2 cut(s) 207, 383
FaeI CATG 4 cut(s) 136, 410, 547, 557
FaqI GGGAC 1 cut(s) 25
FatI CATG 4 cut(s) 132, 406, 543, 553
FauNDI CATATG 1 cut(s) 520
FbaI TGATCA 1 cut(s) 531
Fnu4HI GCNGC 2 cut(s) 83, 568
Fsp4HI GCNGC 2 cut(s) 83, 568
GlaI GCGC 1 cut(s) 120
GluI GCNGC 2 cut(s) 83, 568
HaeII RGCGCY 1 cut(s) 122
HapII CCGG 1 cut(s) 324
HhaI GCGC 1 cut(s) 121
Hin1II CATG 4 cut(s) 136, 410, 547, 557
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HindIII AAGCTT 1 cut(s) 299
HinfI GANTC 5 cut(s) 71, 177, 199, 238, 410
HpaII CCGG 1 cut(s) 324
HphI GGTGA 1 cut(s) 582
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 3 cut(s) 109, 184, 340
Hpy188III TCNNGA 2 cut(s) 68, 407
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 437
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 368
HpyCH4V TGCA 2 cut(s) 228, 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpyF3I CTNAG 1 cut(s) 45
HpySE526I ACGT 1 cut(s) 368
Hsp92II CATG 4 cut(s) 136, 410, 547, 557
HspAI GCGC 1 cut(s) 119
Ksp22I TGATCA 1 cut(s) 531
Kzo9I GATC 1 cut(s) 531
LmnI GCTCC 2 cut(s) 79, 110
LpnPI CCDG 8 cut(s) 70, 107, 134, 255, 315, 337, 357, 606
Lsp1109I GCAGC 1 cut(s) 554
MaeII ACGT 1 cut(s) 368
MaeIII GTNAC 2 cut(s) 352, 560
MalI GATC 1 cut(s) 533
MboI GATC 1 cut(s) 531
MboII GAAGA 1 cut(s) 359
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 1 cut(s) 508
MlyI GAGTC 1 cut(s) 193
MnlI CCTC 1 cut(s) 263
MseI TTAA 3 cut(s) 5, 234, 246
MslI CAYNNNNRTG 1 cut(s) 558
MspI CCGG 1 cut(s) 324
MwoI GCNNNNNNNGC 1 cut(s) 88
NdeI CATATG 1 cut(s) 520
NdeII GATC 1 cut(s) 531
NlaIII CATG 4 cut(s) 136, 410, 547, 557
NlaIV GGNNCC 2 cut(s) 13, 81
NmuCI GTSAC 1 cut(s) 560
NspI RCATGY 2 cut(s) 136, 547
PagI TCATGA 1 cut(s) 406
PciI ACATGT 2 cut(s) 132, 543
PfeI GAWTC 4 cut(s) 71, 177, 238, 410
PinAI ACCGGT 1 cut(s) 323
PkrI GCNGC 2 cut(s) 84, 569
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PpuMI RGGWCCY 1 cut(s) 12
PscI ACATGT 2 cut(s) 132, 543
Psp5II RGGWCCY 1 cut(s) 12
PspN4I GGNNCC 2 cut(s) 13, 81
PspPI GGNCC 1 cut(s) 12
PspPPI RGGWCCY 1 cut(s) 12
RsaI GTAC 2 cut(s) 131, 367
RsaNI GTAC 2 cut(s) 130, 366
RseI CAYNNNNRTG 1 cut(s) 558
SaqAI TTAA 3 cut(s) 5, 234, 246
SatI GCNGC 2 cut(s) 83, 568
Sau3AI GATC 1 cut(s) 531
Sau96I GGNCC 1 cut(s) 12
SchI GAGTC 1 cut(s) 193
SduI GDGCHC 1 cut(s) 107
SetI ASST 4 cut(s) 17, 303, 371, 469
SfcI CTRYAG 1 cut(s) 513
SinI GGWCC 1 cut(s) 12
SmiMI CAYNNNNRTG 1 cut(s) 558
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 1 cut(s) 508
SsiI CCGC 2 cut(s) 83, 91
StyI CCWWGG 2 cut(s) 207, 383
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 371
TasI AATT 1 cut(s) 508
TatI WGTACW 1 cut(s) 129
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 4 cut(s) 71, 177, 238, 410
Tru1I TTAA 3 cut(s) 5, 234, 246
Tru9I TTAA 3 cut(s) 5, 234, 246
TscAI CASTG 2 cut(s) 81, 600
TseFI GTSAC 1 cut(s) 560
TseI GCWGC 1 cut(s) 567
Tsp45I GTSAC 1 cut(s) 560
TspDTI ATGAA 5 cut(s) 129, 395, 423, 542, 594
TspGWI ACGGA 1 cut(s) 548
TspRI CASTG 2 cut(s) 81, 600
VpaK11BI GGWCC 1 cut(s) 12
XapI RAATTY 1 cut(s) 508
XceI RCATGY 2 cut(s) 136, 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.