Rh1CG124200

Crossover junction endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0015755
Physical Location & Seq
Forward (+)
27064078 .. 27065752
1675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG124200.1

Sequence Viewer

Length: 474 bp
ATGGAGCGGCAGAAGCGGTTAGTGGTGTGCTCCGAGAATGAAGCGCTAGCAGAGTACATGTTGAGTAAGTGGCAGGAAATGGCAGATAAGAAGCCCAAAGGAATCTCTGAAAACATTGAAAAGACTCTTACCAAGGCATACTCTAATGTCTGCAACTCTAAGAATCCTGTTAAAACCCTCAAAGAGTTTTCCCAAATCAAGGGTGTTGGGAAATGGATTTTGAAGCTTATGCAAGGGTATTTTGACACCGGTTCAGGCAGTTCTGAACCAGAAGATGTAACTAAAAAGGGTACGTCTTTCTTATTTCCTTGGCTTTACACTCTCTGTTTTCATGAATCGCATTGTATATTCATTCTTGTTGCTGTCCATTATGGACTTGTTCTTTTATTAGGTAAGAGAACCAAAGGAAGCAAACGCTATGTTCCACAAAAGAATTCTGTAGCATATGCGTTACTGATCACACTTTACAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000077 GO:0000228 GO:0000278 GO:0000280 GO:0000712 GO:0000724 GO:0000725 GO:0000727 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007093 GO:0007095 GO:0007127 GO:0007129 GO:0007131 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0016043 GO:0016787 GO:0016788 GO:0016889 GO:0016894 GO:0022402 GO:0022414 GO:0022607 GO:0031297 GO:0031570 GO:0031572 GO:0031573 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044773 GO:0044774 GO:0044818 GO:0045005 GO:0045132 GO:0045143 GO:0045786 GO:0045930 GO:0046483 GO:0048256 GO:0048257 GO:0048285 GO:0048476 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051026 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0051726 GO:0061982 GO:0065007 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903046 GO:1903047
KEGG Pathways
Metabolic & Signaling
ko03440 ko03460 map03440 map03460
Pfam Domains
Protein Families
ERCC4

Protein Analysis

157

Amino Acids

17.94

Weight (kDa)

9.46

Isoelectric Point (pI)

37.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 7
AciI CCGC 2 cut(s) 7, 16
AcsI RAATTY 1 cut(s) 433
AfaI GTAC 2 cut(s) 56, 292
AfeI AGCGCT 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 199
AflIII ACRYGT 1 cut(s) 57
AgeI ACCGGT 1 cut(s) 248
AgsI TTSAA 2 cut(s) 119, 223
AluBI AGCT 1 cut(s) 226
AluI AGCT 1 cut(s) 226
Alw21I GWGCWC 1 cut(s) 32
Aor51HI AGCGCT 1 cut(s) 45
ApoI RAATTY 1 cut(s) 433
AsiGI ACCGGT 1 cut(s) 248
AspLEI GCGC 1 cut(s) 46
AsuNHI GCTAGC 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 32
BclI TGATCA 1 cut(s) 456
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 438
BfoI RGCGCY 1 cut(s) 47
BisI GCNGC 1 cut(s) 8
BlsI GCNGC 1 cut(s) 9
BmtI GCTAGC 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 132, 308
BsaWI WCCGGW 1 cut(s) 248
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse118I RCCGGY 1 cut(s) 248
BseDI CCNNGG 2 cut(s) 132, 308
BseLI CCNNNNNNNGG 1 cut(s) 199
BshTI ACCGGT 1 cut(s) 248
BsiHKAI GWGCWC 1 cut(s) 32
BsiSI CCGG 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 1 cut(s) 456
BspACI CCGC 2 cut(s) 7, 16
BspHI TCATGA 1 cut(s) 331
BspOI GCTAGC 1 cut(s) 50
BsrBI CCGCTC 1 cut(s) 7
BsrFI RCCGGY 1 cut(s) 248
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 2 cut(s) 132, 308
BssMI GATC 1 cut(s) 456
BssT1I CCWWGG 2 cut(s) 132, 308
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 1 cut(s) 159
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 1 cut(s) 459
BstMBI GATC 1 cut(s) 456
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstNSI RCATGY 1 cut(s) 61
BstSFI CTRYAG 1 cut(s) 438
Cac8I GCNNGC 1 cut(s) 48
CciI TCATGA 1 cut(s) 331
CfoI GCGC 1 cut(s) 46
Cfr10I RCCGGY 1 cut(s) 248
Csp6I GTAC 2 cut(s) 55, 291
CspAI ACCGGT 1 cut(s) 248
CviAII CATG 2 cut(s) 58, 332
CviJI RGCY 3 cut(s) 94, 226, 313
CviKI_1 RGCY 3 cut(s) 94, 226, 313
CviQI GTAC 2 cut(s) 55, 291
DdeI CTNAG 1 cut(s) 159
DpnI GATC 1 cut(s) 458
DpnII GATC 1 cut(s) 456
Eco130I CCWWGG 2 cut(s) 132, 308
Eco47III AGCGCT 1 cut(s) 45
EcoRI GAATTC 1 cut(s) 433
EcoT14I CCWWGG 2 cut(s) 132, 308
ErhI CCWWGG 2 cut(s) 132, 308
FaeI CATG 2 cut(s) 61, 335
FaiI YATR 9 cut(s) 59, 139, 230, 333, 347, 372, 420, 445, 447
FatI CATG 2 cut(s) 57, 331
FauNDI CATATG 1 cut(s) 445
FbaI TGATCA 1 cut(s) 456
Fnu4HI GCNGC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 8
FspBI CTAG 1 cut(s) 47
GlaI GCGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 8
HaeII RGCGCY 1 cut(s) 47
HapII CCGG 1 cut(s) 249
HhaI GCGC 1 cut(s) 46
Hin1II CATG 2 cut(s) 61, 335
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 4 cut(s) 102, 124, 163, 335
HpaII CCGG 1 cut(s) 249
Hpy188I TCNGA 3 cut(s) 34, 109, 265
Hpy188III TCNNGA 1 cut(s) 332
HpyCH4IV ACGT 1 cut(s) 293
HpyCH4V TGCA 2 cut(s) 153, 232
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 1 cut(s) 293
Hsp92II CATG 2 cut(s) 61, 335
HspAI GCGC 1 cut(s) 44
Ksp22I TGATCA 1 cut(s) 456
Kzo9I GATC 1 cut(s) 456
LmnI GCTCC 2 cut(s) 4, 35
LpnPI CCDG 6 cut(s) 59, 180, 240, 262, 282, 454
MaeI CTAG 1 cut(s) 47
MaeII ACGT 1 cut(s) 293
MaeIII GTNAC 2 cut(s) 277, 450
MalI GATC 1 cut(s) 458
MbiI CCGCTC 1 cut(s) 7
MboI GATC 1 cut(s) 456
MboII GAAGA 1 cut(s) 284
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 1 cut(s) 433
MlyI GAGTC 1 cut(s) 118
MnlI CCTC 1 cut(s) 188
MseI TTAA 1 cut(s) 171
MspI CCGG 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 13
NdeI CATATG 1 cut(s) 445
NdeII GATC 1 cut(s) 456
NheI GCTAGC 1 cut(s) 46
NlaIII CATG 2 cut(s) 61, 335
NspI RCATGY 1 cut(s) 61
PagI TCATGA 1 cut(s) 331
PciI ACATGT 1 cut(s) 57
PfeI GAWTC 3 cut(s) 102, 163, 335
PinAI ACCGGT 1 cut(s) 248
PkrI GCNGC 1 cut(s) 9
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PscI ACATGT 1 cut(s) 57
RsaI GTAC 2 cut(s) 56, 292
RsaNI GTAC 2 cut(s) 55, 291
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 1 cut(s) 8
Sau3AI GATC 1 cut(s) 456
SchI GAGTC 1 cut(s) 118
SduI GDGCHC 1 cut(s) 32
SetI ASST 4 cut(s) 228, 296, 394, 473
SfcI CTRYAG 1 cut(s) 438
Sse9I AATT 1 cut(s) 433
SsiI CCGC 2 cut(s) 7, 16
SspMI CTAG 1 cut(s) 47
StyI CCWWGG 2 cut(s) 132, 308
TaiI ACGT 1 cut(s) 296
TasI AATT 1 cut(s) 433
TatI WGTACW 1 cut(s) 54
TauI GCSGC 1 cut(s) 10
TfiI GAWTC 3 cut(s) 102, 163, 335
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TspDTI ATGAA 4 cut(s) 54, 320, 340, 348
XapI RAATTY 1 cut(s) 433
XceI RCATGY 1 cut(s) 61
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.