Rh5CG474200

Crossover junction endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0015755
Physical Location & Seq
Reverse (-)
66249376 .. 66252274
2899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG474200.1

Sequence Viewer

Length: 723 bp
ATGATGGAAACCTCCTACACCGTCAACAACAAGCCTCCAATCAAAGAGATCGCTCTCGCCATTGCCCTTCTCGTCCTTGGCATTGTCGTCGGCTCCCTCATGGCCTATAACCGCGGTTTTGAATTTCAGGAATGTTCTTTGCGATTCTTGGTGGGATATTGTTCATTCAAGGCTCCTATTACGCGCGGATTACTTACTATGCTTACAAATGATACAACGGATTCTCTTTCACCAACATACTGCCTATGTAGCAGCAGCTCCTTTACTCTGCTTCAACTTCAAATGGGGACCTATTTAGTTCACACATTGACTGTCAAAACTGAGAGACAAGCCTGCCCTTATCACGATTCAATGGAGCGGCAGAAGCGGTTGGTGGTGTGCTCCGAGAATGAAGCGCTGGCAGAGTACATGTTGAGTAAGTGGCAGGAAATGGCAGACAAGAAGTCCAAAGGAATCTCTGAAAACATTGAAAAGACTCTTACCAAGGCATATTCCAATGTCTGCAACTCTAAGAATCCTGTTAAAACCCTCAAAGAGTTTTCCCAAATCAAGGGTGTTGGGAAATGGATTTTGAAGCTTATGCAAGGGTATTTTGACACCGGTTCAGGCAGTTCTGAACCAGAAGATGTAACTAAAAAGGGTAAGAGAACCAAAGGAAGCAAACACTATGTTCCACAAAAGAATTCTGTAGCATATGCTTTACTGATCACACTTTACAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000077 GO:0000228 GO:0000278 GO:0000280 GO:0000712 GO:0000724 GO:0000725 GO:0000727 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007093 GO:0007095 GO:0007127 GO:0007129 GO:0007131 GO:0007346 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0016043 GO:0016787 GO:0016788 GO:0016889 GO:0016894 GO:0022402 GO:0022414 GO:0022607 GO:0031297 GO:0031570 GO:0031572 GO:0031573 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044773 GO:0044774 GO:0044818 GO:0045005 GO:0045132 GO:0045143 GO:0045786 GO:0045930 GO:0046483 GO:0048256 GO:0048257 GO:0048285 GO:0048476 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051026 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0051726 GO:0061982 GO:0065007 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903046 GO:1903047
KEGG Pathways
Metabolic & Signaling
ko03440 ko03460 map03440 map03460
Pfam Domains
Protein Families
ERCC4

Protein Analysis

240

Amino Acids

26.94

Weight (kDa)

9.19

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 358
AccII CGCG 3 cut(s) 114, 184, 186
AciI CCGC 5 cut(s) 112, 114, 186, 358, 367
AcsI RAATTY 2 cut(s) 122, 682
AfaI GTAC 1 cut(s) 407
AfeI AGCGCT 1 cut(s) 396
AfiI CCNNNNNNNGG 1 cut(s) 550
AflIII ACRYGT 1 cut(s) 408
AgeI ACCGGT 1 cut(s) 599
AgsI TTSAA 7 cut(s) 122, 169, 275, 281, 351, 470, 574
AhdI GACNNNNNGTC 1 cut(s) 442
AluBI AGCT 2 cut(s) 258, 577
AluI AGCT 2 cut(s) 258, 577
Alw21I GWGCWC 1 cut(s) 383
Alw26I GTCTC 1 cut(s) 319
Aor51HI AGCGCT 1 cut(s) 396
AoxI GGCC 1 cut(s) 102
ApeKI GCWGC 2 cut(s) 252, 255
ApoI RAATTY 2 cut(s) 122, 682
AsiGI ACCGGT 1 cut(s) 599
AspLEI GCGC 2 cut(s) 186, 397
AspS9I GGNCC 1 cut(s) 288
AsuHPI GGTGA 1 cut(s) 222
AvaII GGWCC 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 383
BbvI GCAGC 2 cut(s) 264, 267
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BclI TGATCA 1 cut(s) 705
BcoDI GTCTC 1 cut(s) 319
BfmI CTRYAG 1 cut(s) 687
BfoI RGCGCY 1 cut(s) 398
BisI GCNGC 3 cut(s) 253, 256, 359
BlsI GCNGC 3 cut(s) 254, 257, 360
Bme18I GGWCC 1 cut(s) 288
BmeRI GACNNNNNGTC 1 cut(s) 442
BmgT120I GGNCC 1 cut(s) 288
BmiI GGNNCC 3 cut(s) 94, 174, 289
BsaJI CCNNGG 3 cut(s) 76, 112, 483
BsaWI WCCGGW 1 cut(s) 599
Bsc4I CCNNNNNNNGG 1 cut(s) 550
Bse118I RCCGGY 1 cut(s) 599
Bse3DI GCAATG 1 cut(s) 60
BseDI CCNNGG 3 cut(s) 76, 112, 483
BseLI CCNNNNNNNGG 1 cut(s) 550
BseMI GCAATG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 312
BseXI GCAGC 2 cut(s) 264, 267
Bsh1236I CGCG 3 cut(s) 114, 184, 186
BshFI GGCC 1 cut(s) 104
BshTI ACCGGT 1 cut(s) 599
BsiHKAI GWGCWC 1 cut(s) 383
BsiSI CCGG 1 cut(s) 600
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 550
BsmAI GTCTC 1 cut(s) 319
BsmFI GGGAC 1 cut(s) 301
BsnI GGCC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 383
Bsp143I GATC 2 cut(s) 48, 705
BspACI CCGC 5 cut(s) 112, 114, 186, 358, 367
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 1 cut(s) 313
BspFNI CGCG 3 cut(s) 114, 184, 186
BspLI GGNNCC 3 cut(s) 94, 174, 289
BsrBI CCGCTC 1 cut(s) 358
BsrDI GCAATG 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 599
BssAI RCCGGY 1 cut(s) 599
BssECI CCNNGG 3 cut(s) 76, 112, 483
BssMI GATC 2 cut(s) 48, 705
BssT1I CCWWGG 2 cut(s) 76, 483
Bst4CI ACNGT 2 cut(s) 22, 313
BstC8I GCNNGC 2 cut(s) 334, 399
BstDEI CTNAG 2 cut(s) 321, 510
BstDSI CCRYGG 1 cut(s) 112
BstFNI CGCG 3 cut(s) 114, 184, 186
BstH2I RGCGCY 1 cut(s) 398
BstHHI GCGC 2 cut(s) 186, 397
BstKTI GATC 2 cut(s) 51, 708
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 2 cut(s) 48, 705
BstMWI GCNNNNNNNGC 2 cut(s) 249, 364
BstNSI RCATGY 1 cut(s) 412
BstSFI CTRYAG 1 cut(s) 687
BstUI CGCG 3 cut(s) 114, 184, 186
BstV1I GCAGC 2 cut(s) 264, 267
BsuRI GGCC 1 cut(s) 104
BtgI CCRYGG 1 cut(s) 112
Cac8I GCNNGC 2 cut(s) 334, 399
CfoI GCGC 2 cut(s) 186, 397
Cfr10I RCCGGY 1 cut(s) 599
Cfr13I GGNCC 1 cut(s) 288
Cfr42I CCGCGG 1 cut(s) 115
Csp6I GTAC 1 cut(s) 406
CspAI ACCGGT 1 cut(s) 599
CviAII CATG 2 cut(s) 100, 409
CviJI RGCY 7 cut(s) 34, 93, 104, 173, 258, 332, 577
CviKI_1 RGCY 7 cut(s) 34, 93, 104, 173, 258, 332, 577
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 2 cut(s) 321, 510
DpnI GATC 2 cut(s) 50, 707
DpnII GATC 2 cut(s) 48, 705
DriI GACNNNNNGTC 1 cut(s) 442
Eam1105I GACNNNNNGTC 1 cut(s) 442
Eco130I CCWWGG 2 cut(s) 76, 483
Eco47I GGWCC 1 cut(s) 288
Eco47III AGCGCT 1 cut(s) 396
EcoO109I RGGNCCY 1 cut(s) 288
EcoRI GAATTC 1 cut(s) 682
EcoT14I CCWWGG 2 cut(s) 76, 483
ErhI CCWWGG 2 cut(s) 76, 483
FaeI CATG 2 cut(s) 103, 412
FaqI GGGAC 1 cut(s) 301
FatI CATG 2 cut(s) 99, 408
FauNDI CATATG 1 cut(s) 694
FbaI TGATCA 1 cut(s) 705
Fnu4HI GCNGC 3 cut(s) 253, 256, 359
Fsp4HI GCNGC 3 cut(s) 253, 256, 359
GlaI GCGC 2 cut(s) 185, 396
GluI GCNGC 3 cut(s) 253, 256, 359
HaeII RGCGCY 1 cut(s) 398
HaeIII GGCC 1 cut(s) 104
HapII CCGG 1 cut(s) 600
HhaI GCGC 2 cut(s) 186, 397
Hin1II CATG 2 cut(s) 103, 412
Hin6I GCGC 2 cut(s) 184, 395
HinP1I GCGC 2 cut(s) 184, 395
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 575
HinfI GANTC 6 cut(s) 144, 221, 347, 453, 475, 514
HpaII CCGG 1 cut(s) 600
HphI GGTGA 1 cut(s) 222
Hpy166II GTNNAC 2 cut(s) 25, 301
Hpy188I TCNGA 3 cut(s) 385, 460, 616
Hpy188III TCNNGA 2 cut(s) 128, 344
Hpy8I GTNNAC 2 cut(s) 25, 301
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 2 cut(s) 22, 313
HpyCH4V TGCA 2 cut(s) 504, 583
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 364
HpyF3I CTNAG 2 cut(s) 321, 510
Hsp92II CATG 2 cut(s) 103, 412
HspAI GCGC 2 cut(s) 184, 395
Ksp22I TGATCA 1 cut(s) 705
KspI CCGCGG 1 cut(s) 115
Kzo9I GATC 2 cut(s) 48, 705
LmnI GCTCC 5 cut(s) 98, 178, 263, 355, 386
LpnPI CCDG 9 cut(s) 113, 346, 383, 410, 531, 591, 613, 633, 703
Lsp1109I GCAGC 2 cut(s) 264, 267
MaeIII GTNAC 1 cut(s) 628
MalI GATC 2 cut(s) 50, 707
MbiI CCGCTC 1 cut(s) 358
MboI GATC 2 cut(s) 48, 705
MboII GAAGA 1 cut(s) 635
MhlI GDGCHC 1 cut(s) 383
MluCI AATT 2 cut(s) 122, 682
MlyI GAGTC 1 cut(s) 469
MnlI CCTC 4 cut(s) 22, 45, 107, 539
MseI TTAA 1 cut(s) 522
MspA1I CMGCKG 1 cut(s) 114
MspI CCGG 1 cut(s) 600
MvnI CGCG 3 cut(s) 114, 184, 186
MwoI GCNNNNNNNGC 2 cut(s) 249, 364
NdeI CATATG 1 cut(s) 694
NdeII GATC 2 cut(s) 48, 705
NlaIII CATG 2 cut(s) 103, 412
NlaIV GGNNCC 3 cut(s) 94, 174, 289
NspI RCATGY 1 cut(s) 412
PciI ACATGT 1 cut(s) 408
PfeI GAWTC 5 cut(s) 144, 221, 347, 453, 514
PinAI ACCGGT 1 cut(s) 599
PkrI GCNGC 3 cut(s) 254, 257, 360
PleI GAGTC 1 cut(s) 469
PpsI GAGTC 1 cut(s) 469
PpuMI RGGWCCY 1 cut(s) 288
PscI ACATGT 1 cut(s) 408
Psp5II RGGWCCY 1 cut(s) 288
PspN4I GGNNCC 3 cut(s) 94, 174, 289
PspPI GGNCC 1 cut(s) 288
PspPPI RGGWCCY 1 cut(s) 288
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
SacII CCGCGG 1 cut(s) 115
SaqAI TTAA 1 cut(s) 522
SatI GCNGC 3 cut(s) 253, 256, 359
Sau3AI GATC 2 cut(s) 48, 705
Sau96I GGNCC 1 cut(s) 288
SchI GAGTC 1 cut(s) 469
SduI GDGCHC 1 cut(s) 383
SetI ASST 5 cut(s) 14, 260, 293, 579, 722
SfcI CTRYAG 1 cut(s) 687
Sfr303I CCGCGG 1 cut(s) 115
SgrBI CCGCGG 1 cut(s) 115
SinI GGWCC 1 cut(s) 288
Sse9I AATT 2 cut(s) 122, 682
SsiI CCGC 5 cut(s) 112, 114, 186, 358, 367
StyI CCWWGG 2 cut(s) 76, 483
TaaI ACNGT 2 cut(s) 22, 313
TasI AATT 2 cut(s) 122, 682
TatI WGTACW 1 cut(s) 405
TauI GCSGC 1 cut(s) 361
TfiI GAWTC 5 cut(s) 144, 221, 347, 453, 514
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
TseI GCWGC 2 cut(s) 252, 255
TspDTI ATGAA 2 cut(s) 153, 405
TspGWI ACGGA 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 288
XapI RAATTY 2 cut(s) 122, 682
XceI RCATGY 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.