RLG00000007619

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0014796
Physical Location & Seq
Forward (+)
19066025 .. 19067415
1391 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007619

Sequence Viewer

Length: 441 bp
ATGAGACTCACAGCAGGATCATGTTTGGTCCGTCTGGTTTGTTTCAATCCACCTAGCATTCAGCAAGTAATTGATATTCTTTCTTTAAAGGAAATAGCATCTGCAATTATCAAGGGCAGTCTGAGGGAGCAGCAAATCAGCTTAAACCTTTTGAACATGGCCACGCTTGGAAGTCACATGTTCACAAACTTTGGCAGTGTCTTGGCAAGTGATTCCAGGTTGGCAGGTTGTGATAGGTTTGGTAAAATGCCTGAGCAAGTCAGGGATGACTTTCAAATCACTCTTCTTCGAATTCTTGAATCTGTTGCTGGAGAGTCGCTTGTAATTCTCAAAAACCCTGATACTCTTACCCGTAAGGTTCTCCCCAGGATGGCTGTTCTGTATAAGGGCAACAAGGATGGTGATGCCAGGTTTCTGTGCTTGAATATCTTGTTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000912 GO:0000914 GO:0001932 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0007349 GO:0007399 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009555 GO:0009556 GO:0009574 GO:0009653 GO:0009966 GO:0009987 GO:0010245 GO:0010342 GO:0010646 GO:0010975 GO:0015630 GO:0015631 GO:0016043 GO:0019220 GO:0019222 GO:0019953 GO:0022008 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0030054 GO:0030154 GO:0030334 GO:0031323 GO:0031344 GO:0031399 GO:0032268 GO:0032501 GO:0032502 GO:0032506 GO:0032872 GO:0032879 GO:0034293 GO:0040012 GO:0042325 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043408 GO:0043934 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045595 GO:0045664 GO:0046328 GO:0048229 GO:0048236 GO:0048583 GO:0048646 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051270 GO:0051301 GO:0051321 GO:0051704 GO:0051960 GO:0055044 GO:0060255 GO:0060284 GO:0061640 GO:0065007 GO:0070302 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090036 GO:0120035 GO:1900744 GO:1902407 GO:1902410 GO:1902531 GO:1903046 GO:1903047 GO:2000026 GO:2000145 GO:2001222
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

147

Amino Acids

16.14

Weight (kDa)

9.07

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HEAT_ULK4 PF23606 47 - 144 3.1e-16 Serine/threonine-protein kinase ULK4-like, HEAT repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 215
AclWI GGATC 1 cut(s) 25
AcoI YGGCCR 1 cut(s) 159
AcsI RAATTY 1 cut(s) 291
AfiI CCNNNNNNNGG 1 cut(s) 370
AflIII ACRYGT 1 cut(s) 177
AgsI TTSAA 5 cut(s) 46, 154, 275, 299, 424
AjnI CCWGG 3 cut(s) 215, 365, 407
AluBI AGCT 1 cut(s) 141
AluI AGCT 1 cut(s) 141
AlwI GGATC 1 cut(s) 25
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 130
ApoI RAATTY 1 cut(s) 291
AspS9I GGNCC 1 cut(s) 28
AsuHPI GGTGA 1 cut(s) 413
AsuII TTCGAA 1 cut(s) 289
AvaII GGWCC 1 cut(s) 28
BalI TGGCCA 1 cut(s) 161
BbvI GCAGC 1 cut(s) 142
BccI CCATC 2 cut(s) 364, 392
BciT130I CCWGG 3 cut(s) 217, 367, 409
BfaI CTAG 1 cut(s) 54
BfuAI ACCTGC 1 cut(s) 215
BisI GCNGC 1 cut(s) 131
BlsI GCNGC 1 cut(s) 132
Bme1390I CCNGG 3 cut(s) 217, 367, 409
Bme18I GGWCC 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 28
BmrFI CCNGG 3 cut(s) 217, 367, 409
BmsI GCATC 2 cut(s) 107, 394
BpmI CTGGAG 1 cut(s) 330
Bpu10I CCTNAGC 1 cut(s) 252
Bpu14I TTCGAA 1 cut(s) 289
BsaJI CCNNGG 1 cut(s) 365
Bsc4I CCNNNNNNNGG 1 cut(s) 370
BseBI CCWGG 3 cut(s) 217, 367, 409
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 3 cut(s) 271, 375, 403
BseLI CCNNNNNNNGG 1 cut(s) 370
BseMII CTCAG 2 cut(s) 113, 243
BseXI GCAGC 1 cut(s) 142
BshFI GGCC 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 370
BsmI GAATGC 1 cut(s) 57
BsnI GGCC 1 cut(s) 161
Bsp119I TTCGAA 1 cut(s) 289
Bsp143I GATC 1 cut(s) 17
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 2 cut(s) 114, 244
BspMI ACCTGC 1 cut(s) 215
BspPI GGATC 1 cut(s) 25
BspT104I TTCGAA 1 cut(s) 289
BssECI CCNNGG 1 cut(s) 365
BssMI GATC 1 cut(s) 17
Bst2UI CCWGG 3 cut(s) 217, 367, 409
Bst6I CTCTTC 1 cut(s) 288
BstBI TTCGAA 1 cut(s) 289
BstDEI CTNAG 2 cut(s) 122, 252
BstF5I GGATG 3 cut(s) 271, 375, 403
BstKTI GATC 1 cut(s) 20
BstMBI GATC 1 cut(s) 17
BstNI CCWGG 3 cut(s) 217, 367, 409
BstNSI RCATGY 1 cut(s) 181
BstSCI CCNGG 3 cut(s) 215, 365, 407
BstV1I GCAGC 1 cut(s) 142
BsuRI GGCC 1 cut(s) 161
BtsCI GGATG 3 cut(s) 271, 375, 403
BtsI GCAGTG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 202
BveI ACCTGC 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 28
CviAII CATG 3 cut(s) 21, 157, 178
CviJI RGCY 3 cut(s) 141, 161, 374
CviKI_1 RGCY 3 cut(s) 141, 161, 374
DdeI CTNAG 2 cut(s) 122, 252
DpnI GATC 1 cut(s) 19
DpnII GATC 1 cut(s) 17
DraI TTTAAA 1 cut(s) 87
EaeI YGGCCR 1 cut(s) 159
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 28
EcoRI GAATTC 1 cut(s) 291
EcoRII CCWGG 3 cut(s) 215, 365, 407
FaeI CATG 3 cut(s) 24, 160, 181
FaiI YATR 4 cut(s) 22, 158, 179, 384
FatI CATG 3 cut(s) 20, 156, 177
Fnu4HI GCNGC 1 cut(s) 131
FokI GGATG 3 cut(s) 278, 382, 410
Fsp4HI GCNGC 1 cut(s) 131
FspBI CTAG 1 cut(s) 54
GluI GCNGC 1 cut(s) 131
GsuI CTGGAG 1 cut(s) 330
HaeIII GGCC 1 cut(s) 161
Hin1II CATG 3 cut(s) 24, 160, 181
HinfI GANTC 4 cut(s) 6, 212, 299, 314
HphI GGTGA 1 cut(s) 413
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 1 cut(s) 296
Hpy8I GTNNAC 1 cut(s) 183
HpyCH4V TGCA 1 cut(s) 104
HpyF3I CTNAG 2 cut(s) 122, 252
Hsp92II CATG 3 cut(s) 24, 160, 181
Kzo9I GATC 1 cut(s) 17
LmnI GCTCC 1 cut(s) 127
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 2 cut(s) 107, 394
MaeI CTAG 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 173
MalI GATC 1 cut(s) 19
MboI GATC 1 cut(s) 17
MboII GAAGA 2 cut(s) 275, 278
MlsI TGGCCA 1 cut(s) 161
MluCI AATT 4 cut(s) 69, 105, 291, 324
MluNI TGGCCA 1 cut(s) 161
MlyI GAGTC 1 cut(s) 323
MnlI CCTC 1 cut(s) 117
Mox20I TGGCCA 1 cut(s) 161
MscI TGGCCA 1 cut(s) 161
MseI TTAA 2 cut(s) 86, 143
Msp20I TGGCCA 1 cut(s) 161
MspR9I CCNGG 3 cut(s) 217, 367, 409
Mva1269I GAATGC 1 cut(s) 57
MvaI CCWGG 3 cut(s) 217, 367, 409
NdeII GATC 1 cut(s) 17
NlaIII CATG 3 cut(s) 24, 160, 181
NmuCI GTSAC 1 cut(s) 173
NspI RCATGY 1 cut(s) 181
NspV TTCGAA 1 cut(s) 289
PciI ACATGT 1 cut(s) 177
PctI GAATGC 1 cut(s) 57
PfeI GAWTC 2 cut(s) 212, 299
PkrI GCNGC 1 cut(s) 132
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
PscI ACATGT 1 cut(s) 177
Psp6I CCWGG 3 cut(s) 215, 365, 407
PspGI CCWGG 3 cut(s) 215, 365, 407
PspPI GGNCC 1 cut(s) 28
SaqAI TTAA 2 cut(s) 86, 143
SatI GCNGC 1 cut(s) 131
Sau3AI GATC 1 cut(s) 17
Sau96I GGNCC 1 cut(s) 28
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 3 cut(s) 217, 367, 409
SetI ASST 8 cut(s) 55, 143, 150, 221, 229, 239, 360, 413
SfaNI GCATC 2 cut(s) 107, 394
SfuI TTCGAA 1 cut(s) 289
SinI GGWCC 1 cut(s) 28
Sse9I AATT 4 cut(s) 69, 105, 291, 324
SspMI CTAG 1 cut(s) 54
StyD4I CCNGG 3 cut(s) 215, 365, 407
TaqI TCGA 1 cut(s) 289
TasI AATT 4 cut(s) 69, 105, 291, 324
TfiI GAWTC 2 cut(s) 212, 299
Tru1I TTAA 2 cut(s) 86, 143
Tru9I TTAA 2 cut(s) 86, 143
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 1 cut(s) 130
Tsp45I GTSAC 1 cut(s) 173
TspGWI ACGGA 1 cut(s) 20
TspRI CASTG 1 cut(s) 202
VpaK11BI GGWCC 1 cut(s) 28
XapI RAATTY 1 cut(s) 291
XceI RCATGY 1 cut(s) 181
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.