Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0014796

Physical Location & Seq

Genomic Coordinates Reverse (-)

27256325 .. 27257247

Gene Structure 923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G022860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGAACCACCGGTGCTCGGACTTGGACTCGTTGGAGCCTGAGACACGCAGGCTTAGCGGAGGCGCGATAGAGGCGGTCGTACTCGATCATCATATGGTCGAGGTCCTCATCGTTGGTGACGGAGATGAGGGCGTCGAGATCCTCACCGGGGAGCTGGTACTTGAAGCAGACAGCGGCGTCAAGGAGAGTGATTGGGGGGCCTCTCTCTCTCTCTCTCTGCGCCTTCATTGTCATCACATACCTCCTCCTCTTGCAGTCAAATTGATTAGGCGTGGTGTTTTATTTATTTTTTTATTTATCTCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015858 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1901264 GO:1901505 GO:1901642

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

102

Amino Acids

11.16

Weight (kDa)

5.02

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014796)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10321
pyrus_communis	pycom01g05520
rosa_chinensis	RchiOBHm_Chr2g0137491
rosa_laevigata	RLG00000007619 RLG00000032972
rosa_roxburghii	Rroxscaffold_5G00364430
rosa_samantha	Rh1BG114400 Rh1BG174800 Rh1BG175100 Rh1DG204300 Rh1DG204600 Rh4BG227400 Rh4BG242200 Rh4DG237600 Rh7AG219100 Rh7BG215600
rosa_wichuraiana	Rw7G022860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	176
AccII	CGCG	1 cut(s)	65
AciI	CCGC	3 cut(s)	57, 74, 174
AclWI	GGATC	1 cut(s)	133
AcyI	GRCGYC	2 cut(s)	132, 177
AfaI	GTAC	2 cut(s)	81, 159
AfiI	CCNNNNNNNGG	2 cut(s)	16, 148
AgeI	ACCGGT	1 cut(s)	9
AgsI	TTSAA	1 cut(s)	164
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	1 cut(s)	133
AoxI	GGCC	1 cut(s)	198
AsiGI	ACCGGT	1 cut(s)	9
AspLEI	GCGC	2 cut(s)	65, 222
AspS9I	GGNCC	2 cut(s)	103, 198
AsuC2I	CCSGG	1 cut(s)	148
AsuHPI	GGTGA	2 cut(s)	128, 136
AvaII	GGWCC	1 cut(s)	103
Bbv12I	GWGCWC	1 cut(s)	17
BcnI	CCSGG	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	35
BisI	GCNGC	1 cut(s)	175
BlpI	GCTNAGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	176
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	2 cut(s)	103, 198
BmiI	GGNNCC	2 cut(s)	36, 199
BmrFI	CCNGG	1 cut(s)	148
Bpu1102I	GCTNAGC	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	148
BsaHI	GRCGYC	2 cut(s)	132, 177
BsaJI	CCNNGG	1 cut(s)	147
BsaWI	WCCGGW	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 148
Bse118I	RCCGGY	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	147
BseLI	CCNNNNNNNGG	2 cut(s)	16, 148
BseMII	CTCAG	1 cut(s)	30
BseRI	GAGGAG	2 cut(s)	234, 237
Bsh1236I	CGCG	1 cut(s)	65
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	200
BshTI	ACCGGT	1 cut(s)	9
BsiEI	CGRYCG	1 cut(s)	78
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	2 cut(s)	10, 147
BslI	CCNNNNNNNGG	2 cut(s)	16, 148
BsmAI	GTCTC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	2 cut(s)	85, 138
Bsp1720I	GCTNAGC	1 cut(s)	53
BspACI	CCGC	3 cut(s)	57, 74, 174
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	1 cut(s)	31
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	2 cut(s)	36, 199
BspPI	GGATC	1 cut(s)	133
BsrFI	RCCGGY	1 cut(s)	9
BssAI	RCCGGY	1 cut(s)	9
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	2 cut(s)	85, 138
BssNI	GRCGYC	2 cut(s)	132, 177
BstACI	GRCGYC	2 cut(s)	132, 177
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	2 cut(s)	39, 53
BstFNI	CGCG	1 cut(s)	65
BstHHI	GCGC	2 cut(s)	65, 222
BstKTI	GATC	2 cut(s)	88, 141
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	2 cut(s)	85, 138
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 71
BstSCI	CCNGG	1 cut(s)	146
BstUI	CGCG	1 cut(s)	65
BstX2I	RGATCY	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	200
Cac8I	GCNNGC	1 cut(s)	50
CfoI	GCGC	2 cut(s)	65, 222
Cfr10I	RCCGGY	1 cut(s)	9
Cfr13I	GGNCC	2 cut(s)	103, 198
CseI	GACGC	2 cut(s)	121, 166
Csp6I	GTAC	2 cut(s)	80, 158
CspAI	ACCGGT	1 cut(s)	9
CviJI	RGCY	4 cut(s)	37, 52, 154, 200
CviKI_1	RGCY	4 cut(s)	37, 52, 154, 200
CviQI	GTAC	2 cut(s)	80, 158
DdeI	CTNAG	2 cut(s)	39, 53
DpnI	GATC	2 cut(s)	87, 140
DpnII	GATC	2 cut(s)	85, 138
DrdI	GACNNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	103
EcoO109I	RGGNCCY	2 cut(s)	103, 198
FaiI	YATR	3 cut(s)	93, 95, 239
FauNDI	CATATG	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	175
GlaI	GCGC	2 cut(s)	64, 221
GluI	GCNGC	1 cut(s)	175
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	2 cut(s)	10, 147
HgaI	GACGC	2 cut(s)	121, 166
HhaI	GCGC	2 cut(s)	65, 222
Hin1I	GRCGYC	2 cut(s)	132, 177
Hin6I	GCGC	2 cut(s)	63, 220
HinP1I	GCGC	2 cut(s)	63, 220
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	2 cut(s)	10, 147
HphI	GGTGA	2 cut(s)	128, 136
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	1 cut(s)	136
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	233
HpyCH4V	TGCA	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 71
HpyF3I	CTNAG	2 cut(s)	39, 53
Hsp92I	GRCGYC	2 cut(s)	132, 177
HspAI	GCGC	2 cut(s)	63, 220
Kzo9I	GATC	2 cut(s)	85, 138
LmnI	GCTCC	2 cut(s)	34, 151
LpnPI	CCDG	5 cut(s)	23, 34, 51, 140, 160
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	2 cut(s)	87, 140
MboI	GATC	2 cut(s)	85, 138
MflI	RGATCY	1 cut(s)	138
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	2 cut(s)	260, 304
MlyI	GAGTC	1 cut(s)	20
MmeI	TCCRAC	1 cut(s)	12
MspA1I	CMGCKG	1 cut(s)	174
MspI	CCGG	2 cut(s)	10, 147
MspR9I	CCNGG	1 cut(s)	148
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	2 cut(s)	54, 71
NciI	CCSGG	1 cut(s)	148
NdeI	CATATG	1 cut(s)	93
NdeII	GATC	2 cut(s)	85, 138
NlaIV	GGNNCC	2 cut(s)	36, 199
NmuCI	GTSAC	1 cut(s)	116
PinAI	ACCGGT	1 cut(s)	9
PkrI	GCNGC	1 cut(s)	176
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
PpuMI	RGGWCCY	1 cut(s)	103
Psp5II	RGGWCCY	1 cut(s)	103
PspN4I	GGNNCC	2 cut(s)	36, 199
PspPI	GGNCC	2 cut(s)	103, 198
PspPPI	RGGWCCY	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	138
RsaI	GTAC	2 cut(s)	81, 159
RsaNI	GTAC	2 cut(s)	80, 158
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	2 cut(s)	85, 138
Sau96I	GGNCC	2 cut(s)	103, 198
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	148
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	3 cut(s)	105, 156, 244
SgrAI	CRCCGGYG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	103
Sse9I	AATT	2 cut(s)	260, 304
SsiI	CCGC	3 cut(s)	57, 74, 174
StyD4I	CCNGG	1 cut(s)	146
TaqI	TCGA	3 cut(s)	84, 99, 135
TasI	AATT	2 cut(s)	260, 304
TauI	GCSGC	1 cut(s)	177
TseFI	GTSAC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	2 cut(s)	17, 215
TspGWI	ACGGA	1 cut(s)	135
VpaK11BI	GGWCC	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.