Rroxscaffold_5G00364430

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014796
Physical Location & Seq
Reverse (-)
45670996 .. 45672384
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00364430.1

Sequence Viewer

Length: 483 bp
ATGAGACTCACAGCAGGATCATGTTTGGTCCGTCTGGTTCGTTTCAATCCACCTAGCATTCAGCAAGTAATTGATATTCTTTCTTTAAAGGAAATAGCATCTGCAATTATCAAGGGCAGTCTGAGGGAGCAGCAAATCAGCTTAAACCTTTTGAACATGGCCACGCTTGGAAGTCACATGTTCACAAACTTTGGCAGATATTTGCTAAGTGAATCAGTAGTAAACCATACAACTGAGTTTTCTTTGAGTGGGCACCTTATAATAGTTTCATTACAGCTTTGCTGTTATTTTGGTCTTATGGTCAGGGATGACTTTCAAATCACTCTTCTTCGAATTCTTGAATCTGTTGCTGGAGAGTCGCTTGTAATTCTCAAAAACCCTGATATTTTTACCCGTAAGGTTCTCCCCCGGATGGCTGTTCTGTATAACGGCAACAAGGATGGTGATGCCAGGTTTCTGTGCTTGAAAATCTTGTTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000912 GO:0000914 GO:0001932 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0007349 GO:0007399 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009555 GO:0009556 GO:0009574 GO:0009653 GO:0009966 GO:0009987 GO:0010245 GO:0010342 GO:0010646 GO:0010975 GO:0015630 GO:0015631 GO:0016043 GO:0019220 GO:0019222 GO:0019953 GO:0022008 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0030054 GO:0030154 GO:0030334 GO:0031323 GO:0031344 GO:0031399 GO:0032268 GO:0032501 GO:0032502 GO:0032506 GO:0032872 GO:0032879 GO:0034293 GO:0040012 GO:0042325 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043408 GO:0043934 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045595 GO:0045664 GO:0046328 GO:0048229 GO:0048236 GO:0048583 GO:0048646 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051270 GO:0051301 GO:0051321 GO:0051704 GO:0051960 GO:0055044 GO:0060255 GO:0060284 GO:0061640 GO:0065007 GO:0070302 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090036 GO:0120035 GO:1900744 GO:1902407 GO:1902410 GO:1902531 GO:1903046 GO:1903047 GO:2000026 GO:2000145 GO:2001222
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

160

Amino Acids

17.94

Weight (kDa)

9.04

Isoelectric Point (pI)

29.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HEAT_ULK4 PF23606 68 - 158 6.6e-17 Serine/threonine-protein kinase ULK4-like, HEAT repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 260
AccB1I GGYRCC 1 cut(s) 252
AclWI GGATC 1 cut(s) 25
AcoI YGGCCR 1 cut(s) 159
AcsI RAATTY 1 cut(s) 333
AfiI CCNNNNNNNGG 1 cut(s) 412
AflIII ACRYGT 1 cut(s) 177
AgsI TTSAA 5 cut(s) 46, 154, 317, 341, 466
AjnI CCWGG 1 cut(s) 449
AluBI AGCT 2 cut(s) 141, 277
AluI AGCT 2 cut(s) 141, 277
AlwI GGATC 1 cut(s) 25
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 130
ApoI RAATTY 1 cut(s) 333
AspS9I GGNCC 1 cut(s) 28
AsuC2I CCSGG 1 cut(s) 409
AsuHPI GGTGA 1 cut(s) 455
AsuII TTCGAA 1 cut(s) 331
AvaII GGWCC 1 cut(s) 28
BaeGI GKGCMC 1 cut(s) 255
BalI TGGCCA 1 cut(s) 161
BanI GGYRCC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 142
BccI CCATC 2 cut(s) 406, 434
BceAI ACGGC 1 cut(s) 445
BciT130I CCWGG 1 cut(s) 451
BcnI CCSGG 1 cut(s) 409
BfaI CTAG 1 cut(s) 54
BisI GCNGC 1 cut(s) 131
BlsI GCNGC 1 cut(s) 132
Bme1390I CCNGG 2 cut(s) 409, 451
Bme18I GGWCC 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 28
BmiI GGNNCC 1 cut(s) 254
BmrFI CCNGG 2 cut(s) 409, 451
BmsI GCATC 2 cut(s) 107, 436
BpmI CTGGAG 1 cut(s) 372
Bpu14I TTCGAA 1 cut(s) 331
BpuMI CCSGG 1 cut(s) 409
BsaJI CCNNGG 1 cut(s) 407
Bsc4I CCNNNNNNNGG 1 cut(s) 412
BseBI CCWGG 1 cut(s) 451
BseDI CCNNGG 1 cut(s) 407
BseGI GGATG 3 cut(s) 313, 417, 445
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMII CTCAG 2 cut(s) 113, 225
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 1 cut(s) 142
BshFI GGCC 1 cut(s) 161
BshNI GGYRCC 1 cut(s) 252
BsiSI CCGG 1 cut(s) 409
BslI CCNNNNNNNGG 1 cut(s) 412
BsmI GAATGC 1 cut(s) 57
BsnI GGCC 1 cut(s) 161
Bsp119I TTCGAA 1 cut(s) 331
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 1 cut(s) 17
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 2 cut(s) 114, 226
BspLI GGNNCC 1 cut(s) 254
BspPI GGATC 1 cut(s) 25
BspT104I TTCGAA 1 cut(s) 331
BspT107I GGYRCC 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 407
BssMI GATC 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 451
Bst6I CTCTTC 1 cut(s) 330
BstBI TTCGAA 1 cut(s) 331
BstDEI CTNAG 3 cut(s) 122, 206, 234
BstF5I GGATG 3 cut(s) 313, 417, 445
BstKTI GATC 1 cut(s) 20
BstMBI GATC 1 cut(s) 17
BstNI CCWGG 1 cut(s) 451
BstNSI RCATGY 1 cut(s) 181
BstSCI CCNGG 2 cut(s) 407, 449
BstSLI GKGCMC 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 142
BsuRI GGCC 1 cut(s) 161
BtsCI GGATG 3 cut(s) 313, 417, 445
Cfr13I GGNCC 1 cut(s) 28
CviAII CATG 3 cut(s) 21, 157, 178
CviJI RGCY 4 cut(s) 141, 161, 277, 416
CviKI_1 RGCY 4 cut(s) 141, 161, 277, 416
DdeI CTNAG 3 cut(s) 122, 206, 234
DpnI GATC 1 cut(s) 19
DpnII GATC 1 cut(s) 17
DraI TTTAAA 1 cut(s) 87
EaeI YGGCCR 1 cut(s) 159
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 28
EcoRI GAATTC 1 cut(s) 333
EcoRII CCWGG 1 cut(s) 449
FaeI CATG 3 cut(s) 24, 160, 181
FaiI YATR 7 cut(s) 22, 158, 179, 228, 260, 299, 426
FatI CATG 3 cut(s) 20, 156, 177
Fnu4HI GCNGC 1 cut(s) 131
FokI GGATG 3 cut(s) 320, 424, 452
Fsp4HI GCNGC 1 cut(s) 131
FspBI CTAG 1 cut(s) 54
GluI GCNGC 1 cut(s) 131
GsuI CTGGAG 1 cut(s) 372
HaeIII GGCC 1 cut(s) 161
HapII CCGG 1 cut(s) 409
Hin1II CATG 3 cut(s) 24, 160, 181
HinfI GANTC 4 cut(s) 6, 212, 341, 356
HpaII CCGG 1 cut(s) 409
HphI GGTGA 1 cut(s) 455
Hpy166II GTNNAC 2 cut(s) 183, 223
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 1 cut(s) 338
Hpy8I GTNNAC 2 cut(s) 183, 223
HpyCH4V TGCA 1 cut(s) 104
HpyF3I CTNAG 3 cut(s) 122, 206, 234
Hsp92II CATG 3 cut(s) 24, 160, 181
Kzo9I GATC 1 cut(s) 17
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 7 cut(s) 20, 289, 336, 393, 422, 436, 463
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 2 cut(s) 107, 436
MaeI CTAG 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 173
MalI GATC 1 cut(s) 19
MboI GATC 1 cut(s) 17
MboII GAAGA 2 cut(s) 317, 320
MhlI GDGCHC 1 cut(s) 255
MlsI TGGCCA 1 cut(s) 161
MluCI AATT 4 cut(s) 69, 105, 333, 366
MluNI TGGCCA 1 cut(s) 161
MlyI GAGTC 1 cut(s) 365
MnlI CCTC 1 cut(s) 117
Mox20I TGGCCA 1 cut(s) 161
MscI TGGCCA 1 cut(s) 161
MseI TTAA 2 cut(s) 86, 143
Msp20I TGGCCA 1 cut(s) 161
MspI CCGG 1 cut(s) 409
MspR9I CCNGG 2 cut(s) 409, 451
Mva1269I GAATGC 1 cut(s) 57
MvaI CCWGG 1 cut(s) 451
NciI CCSGG 1 cut(s) 409
NdeII GATC 1 cut(s) 17
NlaIII CATG 3 cut(s) 24, 160, 181
NlaIV GGNNCC 1 cut(s) 254
NmuCI GTSAC 1 cut(s) 173
NspI RCATGY 1 cut(s) 181
NspV TTCGAA 1 cut(s) 331
PciI ACATGT 1 cut(s) 177
PctI GAATGC 1 cut(s) 57
PfeI GAWTC 2 cut(s) 212, 341
PkrI GCNGC 1 cut(s) 132
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
PscI ACATGT 1 cut(s) 177
PsiI TTATAA 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 449
PspGI CCWGG 1 cut(s) 449
PspN4I GGNNCC 1 cut(s) 254
PspPI GGNCC 1 cut(s) 28
SaqAI TTAA 2 cut(s) 86, 143
SatI GCNGC 1 cut(s) 131
Sau3AI GATC 1 cut(s) 17
Sau96I GGNCC 1 cut(s) 28
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 2 cut(s) 409, 451
SduI GDGCHC 1 cut(s) 255
SetI ASST 7 cut(s) 55, 143, 150, 258, 279, 402, 455
SfaNI GCATC 2 cut(s) 107, 436
SfuI TTCGAA 1 cut(s) 331
SinI GGWCC 1 cut(s) 28
Sse9I AATT 4 cut(s) 69, 105, 333, 366
SspMI CTAG 1 cut(s) 54
StyD4I CCNGG 2 cut(s) 407, 449
TaqI TCGA 1 cut(s) 331
TasI AATT 4 cut(s) 69, 105, 333, 366
TfiI GAWTC 2 cut(s) 212, 341
Tru1I TTAA 2 cut(s) 86, 143
Tru9I TTAA 2 cut(s) 86, 143
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 1 cut(s) 130
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 258
TspGWI ACGGA 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 28
XapI RAATTY 1 cut(s) 333
XceI RCATGY 1 cut(s) 181
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.