Rh4BG242200

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0014796
Physical Location & Seq
Reverse (-)
40845922 .. 40851459
5538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG242200.1

Sequence Viewer

Length: 495 bp
ATGAACCACCGGCGCTCGGACTTGGTCTCGTTGGAGCCTGAGACGGGCGGGCTTAGCGGAGGTGCGATAGAGGCGGTCGTACTTGATCATCATATGGTTGAGGTCCTCATTGTTGGTGACGGAGATGAGGGCGTCGAGATCCTCGCCAGGGAGCTGGTACTTGAAGCAGACGGCGGTGTCAGGGAGAGTGATTGGATTGGTTATGCGAATTTTGGAAAGCTGTGTGCTTTGGCTGTTCCTTGCACCTTGACAGCTCTGGATCACTGGTCGCCAAAGATTAAAAAATACCCTTCATTCAAAATTGATCCCAATGGTAGTGTGGACCAGTCAGGGATGACTTTCAAATCATATGTCACTCTTCTTCGAATTCTTGAATCTGTTGCTGGAGAGTCGCTTGTAATTCTCAAAAACCCTGATATTTTTACCCGTAAGGTTCTCCCCAGGATGGCTGTTCTGTATAAGGGCAACAAGGATGGTGATGCCAGTATTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000912 GO:0000914 GO:0001932 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0007349 GO:0007399 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009555 GO:0009556 GO:0009574 GO:0009653 GO:0009966 GO:0009987 GO:0010245 GO:0010342 GO:0010646 GO:0010975 GO:0015630 GO:0015631 GO:0016043 GO:0019220 GO:0019222 GO:0019953 GO:0022008 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0030054 GO:0030154 GO:0030334 GO:0031323 GO:0031344 GO:0031399 GO:0032268 GO:0032501 GO:0032502 GO:0032506 GO:0032872 GO:0032879 GO:0034293 GO:0040012 GO:0042325 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043408 GO:0043934 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045595 GO:0045664 GO:0046328 GO:0048229 GO:0048236 GO:0048583 GO:0048646 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051270 GO:0051301 GO:0051321 GO:0051704 GO:0051960 GO:0055044 GO:0060255 GO:0060284 GO:0061640 GO:0065007 GO:0070302 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090036 GO:0120035 GO:1900744 GO:1902407 GO:1902410 GO:1902531 GO:1903046 GO:1903047 GO:2000026 GO:2000145 GO:2001222
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

164

Amino Acids

17.79

Weight (kDa)

5.18

Isoelectric Point (pI)

34.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HEAT_ULK4 PF23606 118 - 163 3.8e-07 Serine/threonine-protein kinase ULK4-like, HEAT repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
AciI CCGC 4 cut(s) 48, 57, 74, 174
AclWI GGATC 3 cut(s) 133, 267, 299
AcsI RAATTY 2 cut(s) 208, 366
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 2 cut(s) 81, 159
AfiI CCNNNNNNNGG 4 cut(s) 16, 44, 148, 445
AgsI TTSAA 4 cut(s) 164, 298, 343, 374
AjnI CCWGG 2 cut(s) 146, 440
AluBI AGCT 3 cut(s) 154, 220, 254
AluI AGCT 3 cut(s) 154, 220, 254
Alw26I GTCTC 2 cut(s) 31, 35
AlwI GGATC 3 cut(s) 133, 267, 299
ApoI RAATTY 2 cut(s) 208, 366
ArsI GACNNNNNNTTYG 2 cut(s) 336, 368
AspLEI GCGC 1 cut(s) 15
AspS9I GGNCC 2 cut(s) 103, 322
AsuHPI GGTGA 2 cut(s) 128, 488
AsuII TTCGAA 1 cut(s) 364
AvaII GGWCC 2 cut(s) 103, 322
BccI CCATC 2 cut(s) 439, 467
BceAI ACGGC 1 cut(s) 187
BciT130I CCWGG 2 cut(s) 148, 442
BclI TGATCA 1 cut(s) 85
BcoDI GTCTC 2 cut(s) 31, 35
BfoI RGCGCY 1 cut(s) 16
BlpI GCTNAGC 1 cut(s) 53
Bme1390I CCNGG 2 cut(s) 148, 442
Bme18I GGWCC 2 cut(s) 103, 322
BmgT120I GGNCC 2 cut(s) 103, 322
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 2 cut(s) 148, 442
BmsI GCATC 1 cut(s) 469
BpmI CTGGAG 1 cut(s) 405
Bpu1102I GCTNAGC 1 cut(s) 53
Bpu14I TTCGAA 1 cut(s) 364
BsaHI GRCGYC 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 31
BsaJI CCNNGG 2 cut(s) 147, 440
Bsc4I CCNNNNNNNGG 4 cut(s) 16, 44, 148, 445
Bse118I RCCGGY 1 cut(s) 9
Bse1I ACTGG 3 cut(s) 269, 325, 483
BseBI CCWGG 2 cut(s) 148, 442
BseDI CCNNGG 2 cut(s) 147, 440
BseGI GGATG 3 cut(s) 339, 450, 478
BseLI CCNNNNNNNGG 4 cut(s) 16, 44, 148, 445
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 3 cut(s) 269, 325, 483
Bsh1285I CGRYCG 1 cut(s) 78
BsiEI CGRYCG 1 cut(s) 78
BsiSI CCGG 1 cut(s) 10
BslI CCNNNNNNNGG 4 cut(s) 16, 44, 148, 445
BsmAI GTCTC 2 cut(s) 31, 35
BsmBI CGTCTC 1 cut(s) 35
Bso31I GGTCTC 1 cut(s) 31
Bsp119I TTCGAA 1 cut(s) 364
Bsp143I GATC 4 cut(s) 85, 138, 259, 304
Bsp1720I GCTNAGC 1 cut(s) 53
BspACI CCGC 4 cut(s) 48, 57, 74, 174
BspCNI CTCAG 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 36
BspPI GGATC 3 cut(s) 133, 267, 299
BspT104I TTCGAA 1 cut(s) 364
BspTNI GGTCTC 1 cut(s) 31
BsrFI RCCGGY 1 cut(s) 9
BsrI ACTGG 3 cut(s) 269, 325, 483
BssAI RCCGGY 1 cut(s) 9
BssECI CCNNGG 2 cut(s) 147, 440
BssMI GATC 4 cut(s) 85, 138, 259, 304
BssNI GRCGYC 1 cut(s) 132
Bst2UI CCWGG 2 cut(s) 148, 442
Bst6I CTCTTC 1 cut(s) 363
BstACI GRCGYC 1 cut(s) 132
BstBI TTCGAA 1 cut(s) 364
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 2 cut(s) 39, 53
BstF5I GGATG 3 cut(s) 339, 450, 478
BstH2I RGCGCY 1 cut(s) 16
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 4 cut(s) 88, 141, 262, 307
BstMAI GTCTC 2 cut(s) 31, 35
BstMBI GATC 4 cut(s) 85, 138, 259, 304
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 2 cut(s) 54, 71
BstNI CCWGG 2 cut(s) 148, 442
BstSCI CCNGG 2 cut(s) 146, 440
BstX2I RGATCY 1 cut(s) 138
BstXI CCANNNNNNTGG 1 cut(s) 154
BstYI RGATCY 1 cut(s) 138
BtsCI GGATG 3 cut(s) 339, 450, 478
BtsIMutI CAGTG 1 cut(s) 262
Cac8I GCNNGC 1 cut(s) 50
CfoI GCGC 1 cut(s) 15
Cfr10I RCCGGY 1 cut(s) 9
Cfr13I GGNCC 2 cut(s) 103, 322
CseI GACGC 1 cut(s) 121
Csp6I GTAC 2 cut(s) 80, 158
CviJI RGCY 7 cut(s) 37, 52, 154, 220, 233, 254, 449
CviKI_1 RGCY 7 cut(s) 37, 52, 154, 220, 233, 254, 449
CviQI GTAC 2 cut(s) 80, 158
DdeI CTNAG 2 cut(s) 39, 53
DpnI GATC 4 cut(s) 87, 140, 261, 306
DpnII GATC 4 cut(s) 85, 138, 259, 304
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 31
Eco47I GGWCC 2 cut(s) 103, 322
EcoO109I RGGNCCY 1 cut(s) 103
EcoRI GAATTC 1 cut(s) 366
EcoRII CCWGG 2 cut(s) 146, 440
Esp3I CGTCTC 1 cut(s) 35
FaiI YATR 6 cut(s) 93, 95, 204, 349, 351, 459
FauI CCCGC 1 cut(s) 41
FauNDI CATATG 2 cut(s) 93, 349
FbaI TGATCA 1 cut(s) 85
FokI GGATG 3 cut(s) 346, 457, 485
GlaI GCGC 1 cut(s) 14
GsuI CTGGAG 1 cut(s) 405
HaeII RGCGCY 1 cut(s) 16
HapII CCGG 1 cut(s) 10
HgaI GACGC 1 cut(s) 121
HhaI GCGC 1 cut(s) 15
Hin1I GRCGYC 1 cut(s) 132
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HinfI GANTC 2 cut(s) 374, 389
HpaII CCGG 1 cut(s) 10
HphI GGTGA 2 cut(s) 128, 488
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 3 cut(s) 136, 257, 371
Hpy8I GTNNAC 1 cut(s) 322
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 300
HpyCH4V TGCA 1 cut(s) 243
HpyF10VI GCNNNNNNNGC 2 cut(s) 54, 71
HpyF3I CTNAG 2 cut(s) 39, 53
Hsp92I GRCGYC 1 cut(s) 132
HspAI GCGC 1 cut(s) 13
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 4 cut(s) 85, 138, 259, 304
LmnI GCTCC 2 cut(s) 34, 151
LweI GCATC 1 cut(s) 469
MaeIII GTNAC 2 cut(s) 116, 352
MalI GATC 4 cut(s) 87, 140, 261, 306
MboI GATC 4 cut(s) 85, 138, 259, 304
MboII GAAGA 2 cut(s) 350, 353
MflI RGATCY 1 cut(s) 138
MluCI AATT 4 cut(s) 208, 300, 366, 399
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 6 cut(s) 53, 64, 94, 116, 121, 152
MseI TTAA 1 cut(s) 279
MspI CCGG 1 cut(s) 10
MspR9I CCNGG 2 cut(s) 148, 442
MvaI CCWGG 2 cut(s) 148, 442
MwoI GCNNNNNNNGC 2 cut(s) 54, 71
NdeI CATATG 2 cut(s) 93, 349
NdeII GATC 4 cut(s) 85, 138, 259, 304
NlaIV GGNNCC 1 cut(s) 36
NmuCI GTSAC 2 cut(s) 116, 352
NspV TTCGAA 1 cut(s) 364
PfeI GAWTC 1 cut(s) 374
PflFI GACNNNGTC 1 cut(s) 23
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
PpuMI RGGWCCY 1 cut(s) 103
Psp5II RGGWCCY 1 cut(s) 103
Psp6I CCWGG 2 cut(s) 146, 440
PspGI CCWGG 2 cut(s) 146, 440
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 2 cut(s) 103, 322
PspPPI RGGWCCY 1 cut(s) 103
PsuI RGATCY 1 cut(s) 138
PsyI GACNNNGTC 1 cut(s) 23
RsaI GTAC 2 cut(s) 81, 159
RsaNI GTAC 2 cut(s) 80, 158
SaqAI TTAA 1 cut(s) 279
Sau3AI GATC 4 cut(s) 85, 138, 259, 304
Sau96I GGNCC 2 cut(s) 103, 322
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 2 cut(s) 148, 442
SetI ASST 7 cut(s) 64, 105, 156, 222, 248, 256, 435
SfaNI GCATC 1 cut(s) 469
SfuI TTCGAA 1 cut(s) 364
SgrAI CRCCGGYG 1 cut(s) 9
SinI GGWCC 2 cut(s) 103, 322
Sse9I AATT 4 cut(s) 208, 300, 366, 399
SsiI CCGC 4 cut(s) 48, 57, 74, 174
StyD4I CCNGG 2 cut(s) 146, 440
TaqI TCGA 2 cut(s) 135, 364
TasI AATT 4 cut(s) 208, 300, 366, 399
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 1 cut(s) 269
TseFI GTSAC 2 cut(s) 116, 352
Tsp45I GTSAC 2 cut(s) 116, 352
TspDTI ATGAA 2 cut(s) 17, 282
TspGWI ACGGA 1 cut(s) 135
TspRI CASTG 1 cut(s) 269
Tth111I GACNNNGTC 1 cut(s) 23
VpaK11BI GGWCC 2 cut(s) 103, 322
XapI RAATTY 2 cut(s) 208, 366
XcmI CCANNNNNNNNNTGG 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.