Rh4DG237600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0014796
Physical Location & Seq
Reverse (-)
44506925 .. 44507456
532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG237600.1

Sequence Viewer

Length: 303 bp
ATGAACCACCAGCGCTCGGACTTGGACTTGTTGGAGCCTGAGACGGGCGGGCTTAGCCGAGGCGCGATAGAGGCGGTCGTACTCGATCATCATATGGTTGAGGTCCTCATCGTAGGTGACGGAGATGAGGGCATCGAGATCCTCGCCCGGGAGCTGGTACTTGAAGCAGACGGCGGTGTCAGGGAGAGTGATTGGATTGATTATGCGAATTTTGGAAAGCTGTGTGCTTTGGCTGTTCCTTGCACCTTGACAGCTCTGGATCACTGGTCGCCAGAGATTGAAGATTTAGAAATTCTTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.93

Weight (kDa)

4.11

Isoelectric Point (pI)

54.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
AccII CGCG 1 cut(s) 65
AciI CCGC 3 cut(s) 48, 74, 174
AclWI GGATC 2 cut(s) 133, 267
AcsI RAATTY 2 cut(s) 208, 291
AfaI GTAC 2 cut(s) 81, 159
AfeI AGCGCT 1 cut(s) 14
AfiI CCNNNNNNNGG 4 cut(s) 16, 44, 148, 154
AgsI TTSAA 2 cut(s) 164, 281
AluBI AGCT 3 cut(s) 154, 220, 254
AluI AGCT 3 cut(s) 154, 220, 254
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 2 cut(s) 133, 267
Ama87I CYCGRG 1 cut(s) 147
Aor51HI AGCGCT 1 cut(s) 14
ApoI RAATTY 2 cut(s) 208, 291
Asp700I GAANNNNTTC 1 cut(s) 294
AspLEI GCGC 2 cut(s) 15, 65
AspS9I GGNCC 1 cut(s) 103
AsuC2I CCSGG 2 cut(s) 148, 149
AsuHPI GGTGA 1 cut(s) 128
AvaI CYCGRG 1 cut(s) 147
AvaII GGWCC 1 cut(s) 103
BceAI ACGGC 1 cut(s) 187
BcnI CCSGG 2 cut(s) 148, 149
BcoDI GTCTC 1 cut(s) 35
BfoI RGCGCY 1 cut(s) 16
BlpI GCTNAGC 1 cut(s) 53
Bme1390I CCNGG 2 cut(s) 148, 149
Bme18I GGWCC 1 cut(s) 103
BmeT110I CYCGRG 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 2 cut(s) 148, 149
BmsI GCATC 1 cut(s) 141
Bpu1102I GCTNAGC 1 cut(s) 53
BpuMI CCSGG 2 cut(s) 148, 149
BsaJI CCNNGG 2 cut(s) 58, 147
Bsc4I CCNNNNNNNGG 4 cut(s) 16, 44, 148, 154
Bse1I ACTGG 1 cut(s) 269
BseDI CCNNGG 2 cut(s) 58, 147
BseLI CCNNNNNNNGG 4 cut(s) 16, 44, 148, 154
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 269
Bsh1236I CGCG 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 78
BsiEI CGRYCG 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 1 cut(s) 148
BslI CCNNNNNNNGG 4 cut(s) 16, 44, 148, 154
BsmAI GTCTC 1 cut(s) 35
BsmBI CGTCTC 1 cut(s) 35
BsoBI CYCGRG 1 cut(s) 147
Bsp143I GATC 3 cut(s) 85, 138, 259
Bsp1720I GCTNAGC 1 cut(s) 53
BspACI CCGC 3 cut(s) 48, 74, 174
BspCNI CTCAG 1 cut(s) 31
BspFNI CGCG 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 36
BspPI GGATC 2 cut(s) 133, 267
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 2 cut(s) 58, 147
BssMI GATC 3 cut(s) 85, 138, 259
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 2 cut(s) 39, 53
BstFNI CGCG 1 cut(s) 65
BstH2I RGCGCY 1 cut(s) 16
BstHHI GCGC 2 cut(s) 15, 65
BstKTI GATC 3 cut(s) 88, 141, 262
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 3 cut(s) 85, 138, 259
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 2 cut(s) 54, 71
BstSCI CCNGG 2 cut(s) 146, 147
BstUI CGCG 1 cut(s) 65
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 262
Cac8I GCNNGC 1 cut(s) 50
CfoI GCGC 2 cut(s) 15, 65
Cfr13I GGNCC 1 cut(s) 103
Cfr9I CCCGGG 1 cut(s) 147
Csp6I GTAC 2 cut(s) 80, 158
CviJI RGCY 7 cut(s) 37, 52, 57, 154, 220, 233, 254
CviKI_1 RGCY 7 cut(s) 37, 52, 57, 154, 220, 233, 254
CviQI GTAC 2 cut(s) 80, 158
DdeI CTNAG 2 cut(s) 39, 53
DpnI GATC 3 cut(s) 87, 140, 261
DpnII GATC 3 cut(s) 85, 138, 259
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 103
Eco47III AGCGCT 1 cut(s) 14
Eco88I CYCGRG 1 cut(s) 147
EcoO109I RGGNCCY 1 cut(s) 103
Esp3I CGTCTC 1 cut(s) 35
FaiI YATR 3 cut(s) 93, 95, 204
FauI CCCGC 1 cut(s) 41
FauNDI CATATG 1 cut(s) 93
GlaI GCGC 2 cut(s) 14, 64
HaeII RGCGCY 1 cut(s) 16
HapII CCGG 1 cut(s) 148
HhaI GCGC 2 cut(s) 15, 65
Hin6I GCGC 2 cut(s) 13, 63
HinP1I GCGC 2 cut(s) 13, 63
HpaII CCGG 1 cut(s) 148
HphI GGTGA 1 cut(s) 128
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 2 cut(s) 136, 257
HpyCH4V TGCA 1 cut(s) 243
HpyF10VI GCNNNNNNNGC 2 cut(s) 54, 71
HpyF3I CTNAG 2 cut(s) 39, 53
HspAI GCGC 2 cut(s) 13, 63
Kzo9I GATC 3 cut(s) 85, 138, 259
LmnI GCTCC 2 cut(s) 34, 151
LpnPI CCDG 8 cut(s) 23, 51, 140, 161, 166, 242, 250, 285
LweI GCATC 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 116
MalI GATC 3 cut(s) 87, 140, 261
MboI GATC 3 cut(s) 85, 138, 259
MboII GAAGA 2 cut(s) 287, 293
MflI RGATCY 1 cut(s) 138
MluCI AATT 2 cut(s) 208, 291
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 6 cut(s) 53, 64, 94, 116, 121, 152
MroXI GAANNNNTTC 1 cut(s) 294
MseI TTAA 1 cut(s) 301
MspI CCGG 1 cut(s) 148
MspR9I CCNGG 2 cut(s) 148, 149
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 2 cut(s) 54, 71
NciI CCSGG 2 cut(s) 148, 149
NdeI CATATG 1 cut(s) 93
NdeII GATC 3 cut(s) 85, 138, 259
NlaIV GGNNCC 1 cut(s) 36
NmeAIII GCCGAG 1 cut(s) 83
NmuCI GTSAC 1 cut(s) 116
PdmI GAANNNNTTC 1 cut(s) 294
PpuMI RGGWCCY 1 cut(s) 103
Psp5II RGGWCCY 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 1 cut(s) 103
PspPPI RGGWCCY 1 cut(s) 103
PsuI RGATCY 1 cut(s) 138
RsaI GTAC 2 cut(s) 81, 159
RsaNI GTAC 2 cut(s) 80, 158
SaqAI TTAA 1 cut(s) 301
Sau3AI GATC 3 cut(s) 85, 138, 259
Sau96I GGNCC 1 cut(s) 103
ScrFI CCNGG 2 cut(s) 148, 149
SetI ASST 6 cut(s) 105, 118, 156, 222, 248, 256
SfaNI GCATC 1 cut(s) 141
SinI GGWCC 1 cut(s) 103
SmaI CCCGGG 1 cut(s) 149
Sse9I AATT 2 cut(s) 208, 291
SsiI CCGC 3 cut(s) 48, 74, 174
StyD4I CCNGG 2 cut(s) 146, 147
TaqI TCGA 2 cut(s) 84, 135
TasI AATT 2 cut(s) 208, 291
Tru1I TTAA 1 cut(s) 301
Tru9I TTAA 1 cut(s) 301
TscAI CASTG 1 cut(s) 269
TseFI GTSAC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 135
TspMI CCCGGG 1 cut(s) 147
TspRI CASTG 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 103
XapI RAATTY 2 cut(s) 208, 291
XmaI CCCGGG 1 cut(s) 147
XmnI GAANNNNTTC 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.