Rh1BG114400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0014796
Physical Location & Seq
Forward (+)
19486214 .. 19490611
4398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG114400.1

Sequence Viewer

Length: 411 bp
ATGAGGCTACAGTACTGCAATGCATTTTCTCTCATATTTTCACATACTGTCGCTGTGATTGACCGGGAAGAGAAACAGCCTCATCCTGGTGGGCCTGGCGGAGGGCCGGTAGAGGCGATCGTACTCGAGGTCGTCGTTGAGGTCTGGCATCATGTGCTCGAGGTTGTCGTCGTTGGTGACGGAGATCAAGGCGTCGAGGTCTTCCCCGGGGAGCTGGTACTTGAACTACACGTCGCTGTGGGAGAGGGCGGAGAGCTTGATGGTGCATTCGACGGCGAGGATCTTGGTCTCACCGCCGGTGTAGCTGGATGGGAACGATTGGTAATTGACAAGCCTAAAAGTTGTTGGTTGGCCAACGTTGGTATTGGGTCAGTATTGGCAGACGACTTGGAGCGTTGGTCTAATCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.51

Weight (kDa)

4.34

Isoelectric Point (pI)

28.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 99, 249, 294
AclI AACGTT 1 cut(s) 357
AclWI GGATC 1 cut(s) 288
AcoI YGGCCR 1 cut(s) 351
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 3 cut(s) 14, 123, 219
AfiI CCNNNNNNNGG 2 cut(s) 86, 101
AflIII ACRYGT 1 cut(s) 229
AgsI TTSAA 1 cut(s) 224
AjiI CACGTC 1 cut(s) 232
AjnI CCWGG 2 cut(s) 85, 94
AluBI AGCT 3 cut(s) 214, 256, 305
AluI AGCT 3 cut(s) 214, 256, 305
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 1 cut(s) 293
AlwI GGATC 1 cut(s) 288
Ama87I CYCGRG 3 cut(s) 125, 158, 206
AoxI GGCC 3 cut(s) 92, 104, 351
AspS9I GGNCC 2 cut(s) 92, 104
AsuC2I CCSGG 3 cut(s) 65, 207, 208
AsuHPI GGTGA 2 cut(s) 188, 283
AvaI CYCGRG 3 cut(s) 125, 158, 206
BalI TGGCCA 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 193
Bbv12I GWGCWC 1 cut(s) 159
BccI CCATC 2 cut(s) 254, 303
BceAI ACGGC 1 cut(s) 289
BciT130I CCWGG 2 cut(s) 87, 96
BcnI CCSGG 3 cut(s) 65, 207, 208
BcoDI GTCTC 1 cut(s) 293
BfmI CTRYAG 1 cut(s) 8
BmcAI AGTACT 1 cut(s) 14
Bme1390I CCNGG 5 cut(s) 65, 87, 96, 207, 208
BmeT110I CYCGRG 3 cut(s) 125, 158, 206
BmgBI CACGTC 1 cut(s) 232
BmgT120I GGNCC 2 cut(s) 92, 104
BmrFI CCNGG 5 cut(s) 65, 87, 96, 207, 208
BmsI GCATC 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 193
BpuMI CCSGG 3 cut(s) 65, 207, 208
BsaHI GRCGYC 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 293
BsaJI CCNNGG 3 cut(s) 205, 206, 207
BsaXI ACNNNNNCTCC 3 cut(s) 93, 123, 383
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 101
Bse118I RCCGGY 2 cut(s) 106, 296
Bse3DI GCAATG 1 cut(s) 25
BseBI CCWGG 2 cut(s) 87, 96
BseDI CCNNGG 3 cut(s) 205, 206, 207
BseGI GGATG 2 cut(s) 82, 314
BseLI CCNNNNNNNGG 2 cut(s) 86, 101
BseMI GCAATG 1 cut(s) 25
Bsh1285I CGRYCG 1 cut(s) 120
BshFI GGCC 3 cut(s) 94, 106, 353
BsiEI CGRYCG 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 159
BsiHKCI CYCGRG 3 cut(s) 125, 158, 206
BsiSI CCGG 4 cut(s) 64, 107, 207, 297
BslI CCNNNNNNNGG 2 cut(s) 86, 101
BsmAI GTCTC 1 cut(s) 293
BsmI GAATGC 1 cut(s) 266
BsnI GGCC 3 cut(s) 94, 106, 353
Bso31I GGTCTC 1 cut(s) 293
BsoBI CYCGRG 3 cut(s) 125, 158, 206
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 3 cut(s) 117, 184, 280
BspACI CCGC 3 cut(s) 99, 249, 294
BspANI GGCC 3 cut(s) 94, 106, 353
BspPI GGATC 1 cut(s) 288
BspTNI GGTCTC 1 cut(s) 293
BsrDI GCAATG 1 cut(s) 25
BsrFI RCCGGY 2 cut(s) 106, 296
BssAI RCCGGY 2 cut(s) 106, 296
BssECI CCNNGG 3 cut(s) 205, 206, 207
BssMI GATC 3 cut(s) 117, 184, 280
BssNI GRCGYC 1 cut(s) 192
Bst2UI CCWGG 2 cut(s) 87, 96
Bst4CI ACNGT 2 cut(s) 12, 49
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 1 cut(s) 192
BstAPI GCANNNNNTGC 1 cut(s) 154
BstENI CCTNNNNNAGG 1 cut(s) 99
BstF5I GGATG 2 cut(s) 82, 314
BstKTI GATC 3 cut(s) 120, 187, 283
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 3 cut(s) 117, 184, 280
BstMCI CGRYCG 1 cut(s) 120
BstMWI GCNNNNNNNGC 2 cut(s) 154, 302
BstNI CCWGG 2 cut(s) 87, 96
BstSCI CCNGG 5 cut(s) 63, 85, 94, 205, 206
BstSFI CTRYAG 1 cut(s) 8
BstV2I GAAGAC 1 cut(s) 193
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BsuRI GGCC 3 cut(s) 94, 106, 353
BtrI CACGTC 1 cut(s) 232
BtsCI GGATG 2 cut(s) 82, 314
Cfr10I RCCGGY 2 cut(s) 106, 296
Cfr13I GGNCC 2 cut(s) 92, 104
Cfr9I CCCGGG 1 cut(s) 206
CseI GACGC 1 cut(s) 181
Csp6I GTAC 3 cut(s) 13, 122, 218
CviAII CATG 1 cut(s) 152
CviJI RGCY 9 cut(s) 7, 79, 94, 106, 214, 256, 305, 334, 353
CviKI_1 RGCY 9 cut(s) 7, 79, 94, 106, 214, 256, 305, 334, 353
CviQI GTAC 3 cut(s) 13, 122, 218
DpnI GATC 3 cut(s) 119, 186, 282
DpnII GATC 3 cut(s) 117, 184, 280
EaeI YGGCCR 1 cut(s) 351
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
EciI GGCGGA 2 cut(s) 114, 264
Eco31I GGTCTC 1 cut(s) 293
Eco88I CYCGRG 3 cut(s) 125, 158, 206
EcoNI CCTNNNNNAGG 1 cut(s) 99
EcoRII CCWGG 2 cut(s) 85, 94
EcoT22I ATGCAT 1 cut(s) 25
FaeI CATG 1 cut(s) 155
FaiI YATR 4 cut(s) 35, 45, 153, 409
FatI CATG 1 cut(s) 151
FokI GGATG 2 cut(s) 69, 321
HaeIII GGCC 3 cut(s) 94, 106, 353
HapII CCGG 4 cut(s) 64, 107, 207, 297
HgaI GACGC 1 cut(s) 181
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 1 cut(s) 155
HpaII CCGG 4 cut(s) 64, 107, 207, 297
HphI GGTGA 2 cut(s) 188, 283
Hpy99I CGWCG 5 cut(s) 137, 173, 197, 236, 275
HpyCH4III ACNGT 2 cut(s) 12, 49
HpyCH4IV ACGT 2 cut(s) 231, 357
HpyCH4V TGCA 3 cut(s) 18, 23, 266
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 302
HpySE526I ACGT 2 cut(s) 231, 357
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 1 cut(s) 155
Kzo9I GATC 3 cut(s) 117, 184, 280
LmnI GCTCC 2 cut(s) 211, 391
LweI GCATC 1 cut(s) 157
MaeII ACGT 2 cut(s) 231, 357
MaeIII GTNAC 1 cut(s) 176
MalI GATC 3 cut(s) 119, 186, 282
MboI GATC 3 cut(s) 117, 184, 280
MboII GAAGA 2 cut(s) 80, 193
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 159
MlsI TGGCCA 1 cut(s) 353
MluCI AATT 1 cut(s) 324
MluNI TGGCCA 1 cut(s) 353
MnlI CCTC 9 cut(s) 90, 95, 106, 121, 133, 154, 190, 238, 271
Mox20I TGGCCA 1 cut(s) 353
Mph1103I ATGCAT 1 cut(s) 25
MscI TGGCCA 1 cut(s) 353
MslI CAYNNNNRTG 1 cut(s) 87
Msp20I TGGCCA 1 cut(s) 353
MspI CCGG 4 cut(s) 64, 107, 207, 297
MspR9I CCNGG 5 cut(s) 65, 87, 96, 207, 208
Mva1269I GAATGC 1 cut(s) 266
MvaI CCWGG 2 cut(s) 87, 96
MwoI GCNNNNNNNGC 2 cut(s) 154, 302
NciI CCSGG 3 cut(s) 65, 207, 208
NdeII GATC 3 cut(s) 117, 184, 280
NlaIII CATG 1 cut(s) 155
NmuCI GTSAC 1 cut(s) 176
NsiI ATGCAT 1 cut(s) 25
PaeR7I CTCGAG 2 cut(s) 125, 158
PcsI WCGNNNNNNNCGW 2 cut(s) 132, 165
PctI GAATGC 1 cut(s) 266
Ple19I CGATCG 1 cut(s) 120
Psp1406I AACGTT 1 cut(s) 357
Psp6I CCWGG 2 cut(s) 85, 94
PspGI CCWGG 2 cut(s) 85, 94
PspPI GGNCC 2 cut(s) 92, 104
PspXI VCTCGAGB 2 cut(s) 125, 158
PsuI RGATCY 1 cut(s) 280
PvuI CGATCG 1 cut(s) 120
RsaI GTAC 3 cut(s) 14, 123, 219
RsaNI GTAC 3 cut(s) 13, 122, 218
RseI CAYNNNNRTG 1 cut(s) 87
Sau3AI GATC 3 cut(s) 117, 184, 280
Sau96I GGNCC 2 cut(s) 92, 104
ScaI AGTACT 1 cut(s) 14
ScrFI CCNGG 5 cut(s) 65, 87, 96, 207, 208
SduI GDGCHC 1 cut(s) 159
SetI ASST 9 cut(s) 132, 144, 165, 201, 216, 234, 258, 307, 360
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 8
Sfr274I CTCGAG 2 cut(s) 125, 158
SgrAI CRCCGGYG 1 cut(s) 296
SlaI CTCGAG 2 cut(s) 125, 158
SmaI CCCGGG 1 cut(s) 208
SmiMI CAYNNNNRTG 1 cut(s) 87
SmlI CTYRAG 2 cut(s) 125, 158
SmoI CTYRAG 2 cut(s) 125, 158
Sse9I AATT 1 cut(s) 324
SsiI CCGC 3 cut(s) 99, 249, 294
StyD4I CCNGG 5 cut(s) 63, 85, 94, 205, 206
TaaI ACNGT 2 cut(s) 12, 49
TaiI ACGT 2 cut(s) 234, 360
TaqI TCGA 4 cut(s) 126, 159, 195, 270
TasI AATT 1 cut(s) 324
TatI WGTACW 1 cut(s) 12
TseFI GTSAC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 176
TspGWI ACGGA 1 cut(s) 195
TspMI CCCGGG 1 cut(s) 206
XagI CCTNNNNNAGG 1 cut(s) 99
XhoI CTCGAG 2 cut(s) 125, 158
XmaI CCCGGG 1 cut(s) 206
ZrmI AGTACT 1 cut(s) 14
Zsp2I ATGCAT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.