Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008488

Physical Location & Seq

Genomic Coordinates Reverse (-)

20004309 .. 20011655

Gene Structure 7347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007697

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3138 bp

ATGGCGCGAGCCCCGAAGCCCCAGGTCTCTTCCGATGAAGCCCTATCCAATTCCGAGGAGGAGGAGCCGATTAACGAGGAAGAGGACGAGGAGGAGCTCGAGGCCGTCGCTCGCCCCGCCGACTCCGACGACGAGGACGCCGCCGAGGACAACTCCCGTGGCTCCGATGACGAGGCCGCGCCGGTCGAGAACGACGATGACTTTGAAGAAGAGAAACAAAAGATTCAGGAAATATTGGATGCACAAAATGCAGCTGTGGATGCTGACATGAACAATCGAGGGAAGGGTCGGTTGCAATATCTTCTGCAGCAAACAGAGTTGTTTGCCCATTTTGCCAAAGGTGACTCGTCTGCATCCCTGAAGAAGGTGAAGGGAAGGGGGCGCCATGCTTCAAAAAAGACTGAAGAGGAAGAGGATGAAGAATGCCTGAAAGAGGAAGAAGATGGTTTATCTGGGACCGGAACGACTCGGCTATTGACGCAACCTTCCTGTATTCAGGGGAAGATGAGGGATTACCAACTTGCTGGATTAAACTGGCTCATACGCCTCTATGAAAATGGCATAAATGGAATCCTTGCAGATGAGATGGGTCTTGGTAAAACTTTGCAAACCATATCCTTGTTGGGTTACCTGCATGAATTCAGAGGAATAACCGGCCCTCATATGGTTGTGGCTCCAAAGTCAACCCTTGGAAACTGGATGAATGAGATTCGGCGTTTCTGTCCCATTTTGCGTGCTGTGAAGTTTCTTGGTAATCCTGATGAAAGAAAGCATATACGTGAGGACTTGCTGGTTGCTGGGAAGTTTGATGTTTGTGTTACAAGTTTTGAAATGGCCATCAAAGAGAAGTCTTGCTTACGCCGTTTCAGTTGGCGATATATAATCATTGATGAAGCCCATCGAATCAAGAATGAGAATTCACTTCTTTCAAAAACAATGAGGCTGTATAATACCAACTACCGTCTTCTAATCACGGGCACACCACTTCAGAATAATCTTCATGAACTATGGTCTCTGCTTAACTTTCTTCTGCCAGAGATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATATCTGGTGAAAATGACCAGCAGGAGGTTGTTCAACAGCTTCACAAGGTCCTCCGGCCGTTCCTTCTCCGAAGGTTGAAGTCAGATGTTGAGAAAGGTTTGCCCCCGAAAAAAGAAACAATACTCAAAGTAGGCATGTCACAAATGCAGAAGCAGTACTATAAGGCTTTACTGCAGAAAGATCTTGAAGTTGTTAATGCTGGTGGAGAACGTAAGCGGCTTCTGAATATAGCTATGCAGCTTCGTAAATGCTGTAATCATCCATATCTTTTCCAAGGTGCTGAGCCTGGGCCTCCTTATACAACTGGAGACCATCTTATCACAAATGCTGGTAAAATGGTGCTTTTGGACAAGTTACTTCCAAAGTTAAAAGAGCGTGATTCTAGGGTCTTAATATTTTCACAGATGACAAGGCTGCTAGATATTCTCGAAGATTATTTAATGTTTAAAGGATACCTTTATTGTCGGATTGATGGAAATACTGGTGGTGAAGACCGTGATGCTTCCATCGATGCCTTCAATAAGCCTGGAAGTGAGAAATTTGTATTCTTGCTATCAACCAGAGCCGGAGGACTTGGTATCAATCTTGCTACTGCAGATGTCGTTATTCTTTATGATAGTGATTGGAACCCTCAAGTTGATTTGCAAGCACAAGATCGTGCTCACAGGATTGGTCAGAAGAAAGAAGTTCAAGTGTTCCGGTTCTGCACTGAGTATACCATTGAGGAAAAAGTGATTGAGAGGGCTTATAAAAAGCTTGCCCTTGATGCTTTGGTGATTCAACAAGGACGATTAGCTGAGCAAAAAACTGTTAATAAAGACGAGCTACTTCAAATGGTGAGGTTTGGTGCTGAAATGGTTTTTAGTTCCAAGGATAGCACAATTACCGATGAGGACATTGATAGAATCATCGCAAAAGGAGAAGAGGCAACTGCTGAGCTTGATGCGAAGATGAAGAAATTTACTGAGGATGCGATTAAATTTAAGATGGATGATACTGCTGAATTGTATGACTTTGATGATGAGAAGGATGAGAAGTTTGACTTCAAGAAGATTGTTAGTGAAAACTGGATTGAACCACCAAAAAGAGAGCGGAAGCGCAATTACTCAGAATCAGAATACTTTAAGCAAACAATGCGCCAAGGTGCTCCAGCAAAACCCAAAGAGCCTCGAATTCCACGCATGCCTCAATTACATGATTTTCAATTTTTCAACACACAAAGGCTGAGTGAGCTGTATGAAAAGGAAGTACGCTACCTCATGCAAAATCATCAGAAGAATCAGTTGAAGGACACAACTATAGAAGTGGATGAACCAGAAGAAGTTGGAGATCCATTGACTGCTGAAGAGCTGGAAGAAAAGGAACGTCTATTAGAAGAGGGATTCTCTTCGTGGAGTAGAAGAGATTTCAATACCTTCATCAGGGCCTGTGAGAAGTATGGGCGAAGTGACATACAAAGCATTGTTGCTGAGATGGACGGGAAAACAGAGGAGGAAGTTGAAAGATATGCTAAGGTTTTCAAAGAGAGATACAAGGAATTGAATGATTATGATAGGATCATTAAGAACATTGAAAGAGGAGAGGCTAGAATCTCTCGTAAGGATGAGATAATGAAAGCTATTGGGAAGAAGTTGGATCGTTACAAGAATCCATGGCTAGAACTGAAGATCCTGTATGGTCAGAACAAGGGAAAGTTGTACAATGAAGAATGTGACCGTTTCATGATATGCATGGTTCACAAGCTTGGGTATGGAAACTGGGATGAGTTGAAAGCAGCATTTCGCACGTCACCTTTGTTTCGTTTTGATTGGTTTGTGAAGTCGCGCACAACTCAGGAACTTGCTAGGAGGTGTGATACATTAATTCGATTGGTGGAGAAAGAGAACCAAGAAGTTGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAGCTTGCTAAGAACACGACACCATCAAAGCGTGGCACGGGGAGGCAGCCAACTGAGAGCCCCTCTTCTTTGAAGAAGAGGAAGCAATTAACTATGGACGATTATGTTAGCACGGGAAAGAGGAGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006325 GO:0006333 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009987 GO:0016043 GO:0016584 GO:0022607 GO:0031497 GO:0032501 GO:0032502 GO:0034728 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044464 GO:0048229 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051276 GO:0065007 GO:0071103 GO:0071824 GO:0071840 GO:0080134 GO:0080135 GO:1900034 GO:1900036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBINO HAND Helicase_C SLIDE SNF2_N

Protein Analysis

1046

Amino Acids

121.22

Weight (kDa)

5.62

Isoelectric Point (pI)

45.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	168 - 328	6.5e-09	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	172 - 449	7e-101	SNF2-related domain
Helicase_C	PF00271	471 - 584	8.9e-25	Helicase conserved C-terminal domain
HAND	PF09110	732 - 819	9.1e-07	HAND
SLIDE	PF09111	877 - 987	1.8e-42	SLIDE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06400 AT3G06400 AT3G06400 AT5G18620 AT5G18620
fragaria_vesca	FvH4_4g17400 FvH4_4g17400
malus_domestica	MD13G1172500.v1.1 MD16G1173900.v1.1
prunus_persica	Prupe.1G140700_v2.0.a1 Prupe.1G140700_v2.0.a1 Prupe.1G140700_v2.0.a1
pyrus_communis	pycom13g14810
rosa_chinensis	RchiOBHm_Chr4g0421321
rosa_laevigata	RLG00000007697
rosa_multiflora	Rmu_sc0015713.1_g000006
rosa_roxburghii	Rroxscaffold_5G00363560
rosa_rugosa	Rorug04G0168900
rosa_samantha	Rh4AG230900 Rh4BG233900 Rh4CG245300 Rh4DG229500
rosa_wichuraiana	Rw4G020300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1827
Acc36I	ACCTGC	1 cut(s)	639
AccB1I	GGYRCC	1 cut(s)	381
AccBSI	CCGCTC	1 cut(s)	2170
AccI	GTMKAC	1 cut(s)	1793
AccII	CGCG	3 cut(s)	7, 179, 2902
AciI	CCGC	5 cut(s)	117, 141, 177, 1294, 2170
AclWI	GGATC	4 cut(s)	2402, 2642, 2721, 2740
AcoI	YGGCCR	2 cut(s)	834, 1133
AcsI	RAATTY	6 cut(s)	638, 916, 1616, 2036, 2057, 2250
AcuI	CTGAAG	5 cut(s)	380, 423, 971, 2442, 2762
AcyI	GRCGYC	2 cut(s)	138, 382
AfaI	GTAC	3 cut(s)	1235, 2328, 2777
AfiI	CCNNNNNNNGG	5 cut(s)	364, 433, 664, 1102, 2499
AjiI	CACGTC	1 cut(s)	2865
AjnI	CCWGG	3 cut(s)	21, 1363, 1603
AloI	GAACNNNNNNTCC	2 cut(s)	2730, 2762
Alw21I	GWGCWC	3 cut(s)	99, 1741, 2227
Alw26I	GTCTC	4 cut(s)	31, 1017, 1380, 2980
AlwI	GGATC	4 cut(s)	2402, 2642, 2721, 2740
AlwNI	CAGNNNCTG	1 cut(s)	2505
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	7 cut(s)	102, 174, 655, 834, 1133, 1367, 2502
ApeKI	GCWGC	6 cut(s)	251, 307, 1315, 1492, 2852, 3052
ApoI	RAATTY	6 cut(s)	638, 916, 1616, 2036, 2057, 2250
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AseI	ATTAAT	1 cut(s)	2939
Asp700I	GAANNNNTTC	1 cut(s)	1071
AspLEI	GCGC	6 cut(s)	7, 181, 384, 2178, 2217, 2904
AspS9I	GGNCC	5 cut(s)	456, 656, 1126, 1367, 2502
AsuHPI	GGTGA	7 cut(s)	353, 379, 1097, 1577, 1864, 1927, 2859
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	2 cut(s)	456, 1126
BaeGI	GKGCMC	1 cut(s)	980
BalI	TGGCCA	1 cut(s)	836
BanI	GGYRCC	1 cut(s)	381
BanII	GRGCYC	3 cut(s)	13, 99, 3068
BarI	GAAGNNNNNNTAC	2 cut(s)	2165, 2197
BbsI	GAAGAC	2 cut(s)	956, 1575
Bbv12I	GWGCWC	3 cut(s)	99, 1741, 2227
BbvI	GCAGC	6 cut(s)	263, 319, 1327, 1479, 2864, 3064
BceAI	ACGGC	3 cut(s)	89, 846, 1120
BciT130I	CCWGG	3 cut(s)	23, 1365, 1605
BciVI	GTATCC	1 cut(s)	1523
BcoDI	GTCTC	4 cut(s)	31, 1017, 1380, 2980
BfaI	CTAG	5 cut(s)	1461, 1496, 2664, 2735, 2922
BfmI	CTRYAG	4 cut(s)	305, 1250, 1671, 2376
BfoI	RGCGCY	1 cut(s)	385
BfuAI	ACCTGC	1 cut(s)	639
BfuI	GTATCC	1 cut(s)	1523
BglII	AGATCT	1 cut(s)	1258
BisI	GCNGC	9 cut(s)	141, 177, 252, 308, 1295, 1316, 1493, 2853, 3053
BlpI	GCTNAGC	3 cut(s)	1359, 1875, 2013
BlsI	GCNGC	9 cut(s)	142, 178, 253, 309, 1296, 1317, 1494, 2854, 3054
BmcAI	AGTACT	1 cut(s)	1235
Bme1390I	CCNGG	3 cut(s)	23, 1365, 1605
Bme18I	GGWCC	2 cut(s)	456, 1126
BmeT110I	CYCGRG	1 cut(s)	98
BmgBI	CACGTC	1 cut(s)	2865
BmgT120I	GGNCC	5 cut(s)	456, 656, 1126, 1367, 2502
BmiI	GGNNCC	6 cut(s)	66, 163, 383, 457, 675, 1706
BmrFI	CCNGG	3 cut(s)	23, 1365, 1605
BmrI	ACTGGG	1 cut(s)	2845
BmsI	GCATC	8 cut(s)	229, 250, 362, 1567, 1579, 1834, 2011, 2038
BmuI	ACTGGG	1 cut(s)	2845
BpiI	GAAGAC	2 cut(s)	956, 1575
BplI	GAGNNNNNCTC	8 cut(s)	137, 169, 2447, 2479, 2977, 3009, 3053, 3085
BpmI	CTGGAG	2 cut(s)	1404, 2211
Bpu10I	CCTNAGC	1 cut(s)	2589
Bpu1102I	GCTNAGC	3 cut(s)	1359, 1875, 2013
BpuEI	CTTGAG	1 cut(s)	1695
Bsa29I	ATCGAT	1 cut(s)	1587
BsaAI	YACGTR	1 cut(s)	779
BsaHI	GRCGYC	2 cut(s)	138, 382
BsaI	GGTCTC	3 cut(s)	31, 1017, 1380
BsaWI	WCCGGW	2 cut(s)	458, 1776
Bsc4I	CCNNNNNNNGG	5 cut(s)	364, 433, 664, 1102, 2499
Bse118I	RCCGGY	2 cut(s)	181, 653
Bse1I	ACTGG	6 cut(s)	539, 701, 1387, 1564, 2150, 2840
BseBI	CCWGG	3 cut(s)	23, 1365, 1605
BseCI	ATCGAT	1 cut(s)	1587
BseLI	CCNNNNNNNGG	5 cut(s)	364, 433, 664, 1102, 2499
BseNI	ACTGG	6 cut(s)	539, 701, 1387, 1564, 2150, 2840
BseRI	GAGGAG	7 cut(s)	71, 74, 77, 104, 107, 2582, 2670
BseSI	GKGCMC	1 cut(s)	980
BseX3I	CGGCCG	1 cut(s)	1133
BseXI	GCAGC	6 cut(s)	263, 319, 1327, 1479, 2864, 3064
BseYI	CCCAGC	1 cut(s)	797
BsgI	GTGCAG	1 cut(s)	1768
Bsh1236I	CGCG	3 cut(s)	7, 179, 2902
Bsh1285I	CGRYCG	2 cut(s)	186, 1136
BshFI	GGCC	7 cut(s)	104, 176, 657, 836, 1135, 1369, 2504
BshNI	GGYRCC	1 cut(s)	381
BshVI	ATCGAT	1 cut(s)	1587
BsiEI	CGRYCG	2 cut(s)	186, 1136
BsiHKAI	GWGCWC	3 cut(s)	99, 1741, 2227
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	6 cut(s)	182, 459, 654, 1132, 1644, 1777
BslFI	GGGAC	2 cut(s)	469, 708
BslI	CCNNNNNNNGG	5 cut(s)	364, 433, 664, 1102, 2499
BsmAI	GTCTC	4 cut(s)	31, 1017, 1380, 2980
BsmFI	GGGAC	2 cut(s)	469, 708
BsmI	GAATGC	1 cut(s)	428
BsnI	GGCC	7 cut(s)	104, 176, 657, 836, 1135, 1369, 2504
Bso31I	GGTCTC	3 cut(s)	31, 1017, 1380
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	6 cut(s)	13, 99, 980, 1741, 2227, 3068
Bsp1407I	TGTACA	1 cut(s)	2775
Bsp143I	GATC	6 cut(s)	1258, 1732, 2407, 2634, 2713, 2745
Bsp1720I	GCTNAGC	3 cut(s)	1359, 1875, 2013
Bsp19I	CCATGG	1 cut(s)	2729
BspACI	CCGC	5 cut(s)	117, 141, 177, 1294, 2170
BspANI	GGCC	7 cut(s)	104, 176, 657, 836, 1135, 1369, 2504
BspDI	ATCGAT	1 cut(s)	1587
BspFNI	CGCG	3 cut(s)	7, 179, 2902
BspHI	TCATGA	2 cut(s)	1000, 2799
BspLI	GGNNCC	6 cut(s)	66, 163, 383, 457, 675, 1706
BspMAI	CTGCAG	3 cut(s)	309, 1254, 1675
BspMI	ACCTGC	1 cut(s)	639
BspPI	GGATC	4 cut(s)	2402, 2642, 2721, 2740
BspQI	GCTCTTC	1 cut(s)	2418
BspT107I	GGYRCC	1 cut(s)	381
BspTNI	GGTCTC	3 cut(s)	31, 1017, 1380
BsrBI	CCGCTC	1 cut(s)	2170
BsrFI	RCCGGY	2 cut(s)	181, 653
BsrGI	TGTACA	1 cut(s)	2775
BsrI	ACTGG	6 cut(s)	539, 701, 1387, 1564, 2150, 2840
BssAI	RCCGGY	2 cut(s)	181, 653
BssMI	GATC	6 cut(s)	1258, 1732, 2407, 2634, 2713, 2745
BssNAI	GTATAC	1 cut(s)	1794
BssNI	GRCGYC	2 cut(s)	138, 382
BssT1I	CCWWGG	5 cut(s)	688, 1351, 1947, 2218, 2729
Bst1107I	GTATAC	1 cut(s)	1794
Bst2UI	CCWGG	3 cut(s)	23, 1365, 1605
Bst4CI	ACNGT	4 cut(s)	962, 1574, 1888, 2795
BstACI	GRCGYC	2 cut(s)	138, 382
BstAPI	GCANNNNNTGC	2 cut(s)	248, 2212
BstAUI	TGTACA	1 cut(s)	2775
BstBAI	YACGTR	1 cut(s)	779
BstC8I	GCNNGC	8 cut(s)	9, 112, 735, 1725, 1836, 2261, 2995, 3012
BstDSI	CCRYGG	2 cut(s)	157, 2729
BstEII	GGTNACC	1 cut(s)	626
BstENI	CCTNNNNNAGG	3 cut(s)	362, 431, 2497
BstFNI	CGCG	3 cut(s)	7, 179, 2902
BstH2I	RGCGCY	1 cut(s)	385
BstHHI	GCGC	6 cut(s)	7, 181, 384, 2178, 2217, 2904
BstKTI	GATC	6 cut(s)	1261, 1735, 2410, 2637, 2716, 2748
BstMAI	GTCTC	4 cut(s)	31, 1017, 1380, 2980
BstMBI	GATC	6 cut(s)	1258, 1732, 2407, 2634, 2713, 2745
BstMCI	CGRYCG	2 cut(s)	186, 1136
BstMWI	GCNNNNNNNGC	8 cut(s)	116, 248, 260, 332, 478, 1844, 2212, 2308
BstNI	CCWGG	3 cut(s)	23, 1365, 1605
BstNSI	RCATGY	2 cut(s)	1216, 2263
BstPI	GGTNACC	1 cut(s)	626
BstSCI	CCNGG	3 cut(s)	21, 1363, 1603
BstSFI	CTRYAG	4 cut(s)	305, 1250, 1671, 2376
BstSLI	GKGCMC	1 cut(s)	980
BstUI	CGCG	3 cut(s)	7, 179, 2902
BstV1I	GCAGC	6 cut(s)	263, 319, 1327, 1479, 2864, 3064
BstV2I	GAAGAC	2 cut(s)	956, 1575
BstX2I	RGATCY	3 cut(s)	1258, 2407, 2745
BstXI	CCANNNNNNTGG	1 cut(s)	524
BstYI	RGATCY	3 cut(s)	1258, 2407, 2745
BstZ17I	GTATAC	1 cut(s)	1794
BstZI	CGGCCG	1 cut(s)	1133
Bsu15I	ATCGAT	1 cut(s)	1587
BsuI	GTATCC	1 cut(s)	1523
BsuRI	GGCC	7 cut(s)	104, 176, 657, 836, 1135, 1369, 2504
BsuTUI	ATCGAT	1 cut(s)	1587
BtgI	CCRYGG	2 cut(s)	157, 2729
BtgZI	GCGATG	1 cut(s)	1972
BtrI	CACGTC	1 cut(s)	2865
BtsIMutI	CAGTG	1 cut(s)	1785
BveI	ACCTGC	1 cut(s)	639
Cac8I	GCNNGC	8 cut(s)	9, 112, 735, 1725, 1836, 2261, 2995, 3012
CaiI	CAGNNNCTG	1 cut(s)	2505
CciI	TCATGA	2 cut(s)	1000, 2799
CfoI	GCGC	6 cut(s)	7, 181, 384, 2178, 2217, 2904
Cfr10I	RCCGGY	2 cut(s)	181, 653
Cfr13I	GGNCC	5 cut(s)	456, 656, 1126, 1367, 2502
ClaI	ATCGAT	1 cut(s)	1587
CseI	GACGC	2 cut(s)	146, 487
Csp6I	GTAC	3 cut(s)	1234, 2327, 2776
CspCI	CAANNNNNGTGG	2 cut(s)	139, 174
CviQI	GTAC	3 cut(s)	1234, 2327, 2776
DinI	GGCGCC	1 cut(s)	383
DpnI	GATC	6 cut(s)	1260, 1734, 2409, 2636, 2715, 2747
DpnII	GATC	6 cut(s)	1258, 1732, 2407, 2634, 2713, 2745
DraI	TTTAAA	1 cut(s)	1525
EaeI	YGGCCR	2 cut(s)	834, 1133
EagI	CGGCCG	1 cut(s)	1133
Ecl136II	GAGCTC	1 cut(s)	97
EclXI	CGGCCG	1 cut(s)	1133
Eco130I	CCWWGG	5 cut(s)	688, 1351, 1947, 2218, 2729
Eco24I	GRGCYC	3 cut(s)	13, 99, 3068
Eco31I	GGTCTC	3 cut(s)	31, 1017, 1380
Eco47I	GGWCC	2 cut(s)	456, 1126
Eco52I	CGGCCG	1 cut(s)	1133
Eco53kI	GAGCTC	1 cut(s)	97
Eco57I	CTGAAG	5 cut(s)	380, 423, 971, 2442, 2762
Eco88I	CYCGRG	1 cut(s)	98
Eco91I	GGTNACC	1 cut(s)	626
EcoICRI	GAGCTC	1 cut(s)	97
EcoNI	CCTNNNNNAGG	3 cut(s)	362, 431, 2497
EcoO109I	RGGNCCY	2 cut(s)	1126, 2502
EcoO65I	GGTNACC	1 cut(s)	626
EcoRI	GAATTC	3 cut(s)	638, 916, 2250
EcoRII	CCWGG	3 cut(s)	21, 1363, 1603
EcoT14I	CCWWGG	5 cut(s)	688, 1351, 1947, 2218, 2729
EcoT22I	ATGCAT	1 cut(s)	2810
EcoT38I	GRGCYC	3 cut(s)	13, 99, 3068
EgeI	GGCGCC	1 cut(s)	383
EheI	GGCGCC	1 cut(s)	383
ErhI	CCWWGG	5 cut(s)	688, 1351, 1947, 2218, 2729
FalI	AAGNNNNNCTT	6 cut(s)	839, 871, 1518, 1550, 2105, 2137
FaqI	GGGAC	2 cut(s)	469, 708
FauI	CCCGC	1 cut(s)	124
FauNDI	CATATG	1 cut(s)	663
FblI	GTMKAC	1 cut(s)	1793
Fnu4HI	GCNGC	9 cut(s)	141, 177, 252, 308, 1295, 1316, 1493, 2853, 3053
FriOI	GRGCYC	3 cut(s)	13, 99, 3068
Fsp4HI	GCNGC	9 cut(s)	141, 177, 252, 308, 1295, 1316, 1493, 2853, 3053
FspBI	CTAG	5 cut(s)	1461, 1496, 2664, 2735, 2922
GlaI	GCGC	6 cut(s)	6, 180, 383, 2177, 2216, 2903
GluI	GCNGC	9 cut(s)	141, 177, 252, 308, 1295, 1316, 1493, 2853, 3053
GsaI	CCCAGC	1 cut(s)	801
GsuI	CTGGAG	2 cut(s)	1404, 2211
HaeII	RGCGCY	1 cut(s)	385
HaeIII	GGCC	7 cut(s)	104, 176, 657, 836, 1135, 1369, 2504
HapII	CCGG	6 cut(s)	182, 459, 654, 1132, 1644, 1777
HgaI	GACGC	2 cut(s)	146, 487
HhaI	GCGC	6 cut(s)	7, 181, 384, 2178, 2217, 2904
Hin1I	GRCGYC	2 cut(s)	138, 382
Hin6I	GCGC	6 cut(s)	5, 179, 382, 2176, 2215, 2902
HinP1I	GCGC	6 cut(s)	5, 179, 382, 2176, 2215, 2902
HincII	GTYRAC	1 cut(s)	684
HindII	GTYRAC	1 cut(s)	684
HindIII	AAGCTT	3 cut(s)	1832, 2819, 3008
HpaII	CCGG	6 cut(s)	182, 459, 654, 1132, 1644, 1777
HphI	GGTGA	7 cut(s)	353, 379, 1097, 1577, 1864, 1927, 2859
Hpy166II	GTNNAC	3 cut(s)	684, 1794, 2815
Hpy8I	GTNNAC	3 cut(s)	684, 1794, 2815
Hpy99I	CGWCG	4 cut(s)	110, 131, 134, 197
HpyCH4III	ACNGT	4 cut(s)	962, 1574, 1888, 2795
HpyCH4IV	ACGT	4 cut(s)	778, 1288, 2443, 2864
HpyF10VI	GCNNNNNNNGC	8 cut(s)	116, 248, 260, 332, 478, 1844, 2212, 2308
HpySE526I	ACGT	4 cut(s)	778, 1288, 2443, 2864
Hsp92I	GRCGYC	2 cut(s)	138, 382
HspAI	GCGC	6 cut(s)	5, 179, 382, 2176, 2215, 2902
KasI	GGCGCC	1 cut(s)	381
Kzo9I	GATC	6 cut(s)	1258, 1732, 2407, 2634, 2713, 2745
LguI	GCTCTTC	1 cut(s)	2418
LmnI	GCTCC	5 cut(s)	64, 94, 167, 679, 2230
Lsp1109I	GCAGC	6 cut(s)	263, 319, 1327, 1479, 2864, 3064
LweI	GCATC	8 cut(s)	229, 250, 362, 1567, 1579, 1834, 2011, 2038
MaeI	CTAG	5 cut(s)	1461, 1496, 2664, 2735, 2922
MaeII	ACGT	4 cut(s)	778, 1288, 2443, 2864
MaeIII	GTNAC	9 cut(s)	341, 626, 817, 1215, 1431, 2525, 2717, 2789, 2865
MalI	GATC	6 cut(s)	1260, 1734, 2409, 2636, 2715, 2747
MbiI	CCGCTC	1 cut(s)	2170
MboI	GATC	6 cut(s)	1258, 1732, 2407, 2634, 2713, 2745
MflI	RGATCY	3 cut(s)	1258, 2407, 2745
MhlI	GDGCHC	6 cut(s)	13, 99, 980, 1741, 2227, 3068
MlsI	TGGCCA	1 cut(s)	836
MluNI	TGGCCA	1 cut(s)	836
Mly113I	GGCGCC	1 cut(s)	382
MlyI	GAGTC	3 cut(s)	116, 338, 460
MmeI	TCCRAC	4 cut(s)	150, 1523, 2383, 2691
Mox20I	TGGCCA	1 cut(s)	836
Mph1103I	ATGCAT	1 cut(s)	2810
MroXI	GAANNNNTTC	1 cut(s)	1071
MscI	TGGCCA	1 cut(s)	836
MslI	CAYNNNNRTG	1 cut(s)	777
Msp20I	TGGCCA	1 cut(s)	836
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	6 cut(s)	182, 459, 654, 1132, 1644, 1777
MspR9I	CCNGG	3 cut(s)	23, 1365, 1605
Mva1269I	GAATGC	1 cut(s)	428
MvaI	CCWGG	3 cut(s)	23, 1365, 1605
MvnI	CGCG	3 cut(s)	7, 179, 2902
MwoI	GCNNNNNNNGC	8 cut(s)	116, 248, 260, 332, 478, 1844, 2212, 2308
NarI	GGCGCC	1 cut(s)	382
NcoI	CCATGG	1 cut(s)	2729
NdeI	CATATG	1 cut(s)	663
NdeII	GATC	6 cut(s)	1258, 1732, 2407, 2634, 2713, 2745
NlaIV	GGNNCC	6 cut(s)	66, 163, 383, 457, 675, 1706
NmeAIII	GCCGAG	2 cut(s)	169, 448
NmuCI	GTSAC	5 cut(s)	341, 1215, 2525, 2789, 2865
NsiI	ATGCAT	1 cut(s)	2810
NspI	RCATGY	2 cut(s)	1216, 2263
PaeI	GCATGC	1 cut(s)	2263
PaeR7I	CTCGAG	1 cut(s)	98
PagI	TCATGA	2 cut(s)	1000, 2799
PciSI	GCTCTTC	1 cut(s)	2418
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PctI	GAATGC	1 cut(s)	428
PdmI	GAANNNNTTC	1 cut(s)	1071
PkrI	GCNGC	9 cut(s)	142, 178, 253, 309, 1296, 1317, 1494, 2854, 3054
PleI	GAGTC	3 cut(s)	116, 338, 460
PluTI	GGCGCC	1 cut(s)	385
PpsI	GAGTC	3 cut(s)	116, 338, 460
Ppu21I	YACGTR	1 cut(s)	779
PpuMI	RGGWCCY	1 cut(s)	1126
PshBI	ATTAAT	1 cut(s)	2939
PsiI	TTATAA	1 cut(s)	1827
Psp124BI	GAGCTC	1 cut(s)	99
Psp5II	RGGWCCY	1 cut(s)	1126
Psp6I	CCWGG	3 cut(s)	21, 1363, 1603
PspEI	GGTNACC	1 cut(s)	626
PspFI	CCCAGC	1 cut(s)	797
PspGI	CCWGG	3 cut(s)	21, 1363, 1603
PspN4I	GGNNCC	6 cut(s)	66, 163, 383, 457, 675, 1706
PspPI	GGNCC	5 cut(s)	456, 656, 1126, 1367, 2502
PspPPI	RGGWCCY	1 cut(s)	1126
PspXI	VCTCGAGB	1 cut(s)	98
PstI	CTGCAG	3 cut(s)	309, 1254, 1675
PstNI	CAGNNNCTG	1 cut(s)	2505
PsuI	RGATCY	3 cut(s)	1258, 2407, 2745
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	3 cut(s)	1235, 2328, 2777
RsaNI	GTAC	3 cut(s)	1234, 2327, 2776
RseI	CAYNNNNRTG	1 cut(s)	777
SacI	GAGCTC	1 cut(s)	99
SapI	GCTCTTC	1 cut(s)	2418
SatI	GCNGC	9 cut(s)	141, 177, 252, 308, 1295, 1316, 1493, 2853, 3053
Sau3AI	GATC	6 cut(s)	1258, 1732, 2407, 2634, 2713, 2745
Sau96I	GGNCC	5 cut(s)	456, 656, 1126, 1367, 2502
ScaI	AGTACT	1 cut(s)	1235
SchI	GAGTC	3 cut(s)	116, 338, 460
ScrFI	CCNGG	3 cut(s)	23, 1365, 1605
SduI	GDGCHC	6 cut(s)	13, 99, 980, 1741, 2227, 3068
SfaNI	GCATC	8 cut(s)	229, 250, 362, 1567, 1579, 1834, 2011, 2038
SfcI	CTRYAG	4 cut(s)	305, 1250, 1671, 2376
SfoI	GGCGCC	1 cut(s)	383
Sfr274I	CTCGAG	1 cut(s)	98
SinI	GGWCC	2 cut(s)	456, 1126
SlaI	CTCGAG	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	777
SmlI	CTYRAG	2 cut(s)	98, 1710
SmoI	CTYRAG	2 cut(s)	98, 1710
SphI	GCATGC	1 cut(s)	2263
SsiI	CCGC	5 cut(s)	117, 141, 177, 1294, 2170
SspDI	GGCGCC	1 cut(s)	381
SspI	AATATT	2 cut(s)	234, 1473
SspMI	CTAG	5 cut(s)	1461, 1496, 2664, 2735, 2922
SstI	GAGCTC	1 cut(s)	99
StyD4I	CCNGG	3 cut(s)	21, 1363, 1603
StyI	CCWWGG	5 cut(s)	688, 1351, 1947, 2218, 2729
TaaI	ACNGT	4 cut(s)	962, 1574, 1888, 2795
TaiI	ACGT	4 cut(s)	781, 1291, 2446, 2867
TaqI	TCGA	8 cut(s)	99, 186, 277, 901, 1506, 1587, 2248, 2944
TatI	WGTACW	2 cut(s)	1233, 2775
TauI	GCSGC	3 cut(s)	143, 179, 1297
TscAI	CASTG	1 cut(s)	1792
TseFI	GTSAC	5 cut(s)	341, 1215, 2525, 2789, 2865
TseI	GCWGC	6 cut(s)	251, 307, 1315, 1492, 2852, 3052
Tsp45I	GTSAC	5 cut(s)	341, 1215, 2525, 2789, 2865
TspRI	CASTG	1 cut(s)	1792
VpaK11BI	GGWCC	2 cut(s)	456, 1126
VspI	ATTAAT	1 cut(s)	2939
XagI	CCTNNNNNAGG	3 cut(s)	362, 431, 2497
XapI	RAATTY	6 cut(s)	638, 916, 1616, 2036, 2057, 2250
XceI	RCATGY	2 cut(s)	1216, 2263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	619
XhoI	CTCGAG	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	1793
XmnI	GAANNNNTTC	1 cut(s)	1071
XspI	CTAG	5 cut(s)	1461, 1496, 2664, 2735, 2922
ZrmI	AGTACT	1 cut(s)	1235
Zsp2I	ATGCAT	1 cut(s)	2810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.