Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015713.1

Orthogroup ID

OG0008488

Physical Location & Seq

Genomic Coordinates Forward (+)

14615 .. 22058

Gene Structure 7444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015713.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3213 bp

atggcgcgagccccgaagccccaggtctcttccgacgaagccctatccaattccgaggaggaggagccgatcaacgaggaagaggacgaggaggagctcgaggccgtcgctcggcccgccgactccgacgacgaggacgccgccgaggacaactcccgcggctccgatgacgaggccgcgccggtcgataacgacgatgactttgaagaagaggatggaggtaatgaaagcaatgctgaagtcagcaaacgcgagaaggccaggcttaaacgcatggaacaaatgaagaaacaaaagattcaggaaatattggatgcacaaaatgcagctgtggatgctgacatgaacaatcgagggaagggtcggttgcaatatcttttgcagcaaacagagttgtttgcccattttgccaaaggtgactcgtctgcatccctgaagaaggtgaagggaagggggcgccatgcttcaaaaaagactgaagaagaagaggatgaagaatgcctaaaagaggaagaagatggtttatctgggaccggaacgacacggctattgacgcaaccttcctgtattcaggggaagatgagggattaccaacttgctggattaaactggctcatacgcctctatgaaaatggcataaatggaatccttgcagatgagatgggtcttggtaaaactttgcaaaccatatccttgttgggttacctgcatgaattcagaggaataaccggccctcatatggttgtggctccaaagtcaacccttggaaactggatgaatgagattcggcgtttctgtcccattttgcgtgctgtgaagtttcttggtaatcctgatgaaagaaagcatatacgtgaggaattgctggttgctgggaagtttgatgtttgtgttacaagttttgaaatggccatcaaagagaagtcttgcttacgccgtttcagctggcgatatataatcattgatgaagcccatcgaatcaagaatgagaattcacttctttcgaaaacaatgaggctgtataataccaactaccgtcttctaatcacaggcacaccgcttcagaataatcttcatgaactatggtctctgcttaactttcttctgccagagatatttagttctgctgaaacttttgatgaatggtttcaaatatctggtgaaaatgaccagcaggaggttgttcaacagcttcacaaggtcctccggccattccttctccgaaggttgaagtcagatgttgagaaaggtttacctccaaaaaaagaaacaatactcaaagtaggcatgtcacaaatgcagaaacagtactataaggctttactgcagaaagatcttgaagttgttaatgctggtggagaacgtaagcggcttctgaatatagctatgcagcttcgtaaatgctgtaatcatccatatctcttccaaggtgctgagcctgggcctccttatacaactggagaccatcttatcacaaatgctggtaaaatggtgcttttggacaagttacttccaaagttaaaagagcgtgattctagggtcttaatattttcacagatgacaaggctgctagatattctcgaagattatttaatgtttaaaggatacctttattgtcggattgatggaaatactggtggtgaagaccgtgatgcttccatcgatgccttcaataagcctggaagtgagaaatttgtattcttgctatcaaccagagctggaggacttggtatcaatcttgctactgcagatgtcgttattctttatgatagtgattggaaccctcaagttgatttgcaagcacaagatcgtgctcacaggattggtcagaagaaagaagttcaagtgttccggttctgcactgagtataccattgaggaaaaagtgattgagagggcttataaaaagcttgcccttgatgctttggtgattcaacaaggacgattagctgagcaaaaaactgttaataaagatgagctacttcaaatggtgaggtttggtgctgaaatggtttttagttccaaggatagcacaattaccgatgaggacattgatagaatcatcgcgaaaggagaagaggcaactgctgagcttgatgcaaagatgaagaaatttactgaggatgcgattaaatttaagatggatgatactgctgaattgtatgactttgatgatgagaaggatgagaagtttgacttcaagaagattgttagtgaaaactggattgaaccaccaaaaagagagcggaagcgcaattactcagaatcagaatactttaagcaaacaatgcgccaaggtgctccagcaaaacccaaagagcctcgaattccacgcatgcctcaattacatgattttcaatttttcaacacacaaaggctgagtgagctgtatgaaaaggaagtacgctacctcatgcaaaatcatcagaagaatcagttgaaggacacgactatagaagtggatgaaccagaagaagttggagatccattgactgctgaagagctggaagaaaaggaacgtctattagaagagggattctcttcgtggagtagaagagatttcaataccttcatcagggcctgtgagaagtatgggcgaagtgacatacaaagcattgttgctgagatggacgggaaaacagaggaggaagtcgaaagatatgctaaggttttcaaagagagatacaaggaattaaatgattatgataggatcattaagaacattgaaagaggagaggctagaatctctcgtaaggatgagataatgaaagctattgggaagaagttggatcgttacaagaatccatggctagaactgaagatcctttatggtcagaacaagggaaagttgtacaatgaagaatgtgaccgtttcatgatatgcatggttcacaagcttgggtatggaaactgggatgagttgaaagcagcatttcgcacgtcacctttgtttcgttttgattggtttgtgaagtcgcgcacaactcaggaacttgctaggaggtgtgatacattaattcgattggtggagaaagagaaccaagaagttgatgagagggagagacaagctcgcaaagagaagaagcttgctaagaacatgacaccatcaaagcgtggtacggggaggcagccaactgagagcccctcttctttgaagaagaggaagcaattaactatggacgattatgttagcacgggaaagaggaggagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006325 GO:0006333 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009987 GO:0016043 GO:0016584 GO:0022607 GO:0031497 GO:0032501 GO:0032502 GO:0034728 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044464 GO:0048229 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051276 GO:0065007 GO:0071103 GO:0071824 GO:0071840 GO:0080134 GO:0080135 GO:1900034 GO:1900036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBINO HAND Helicase_C SLIDE SNF2_N

Protein Analysis

1070

Amino Acids

124.13

Weight (kDa)

5.7

Isoelectric Point (pI)

45.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06400 AT3G06400 AT3G06400 AT5G18620 AT5G18620
fragaria_vesca	FvH4_4g17400 FvH4_4g17400
malus_domestica	MD13G1172500.v1.1 MD16G1173900.v1.1
prunus_persica	Prupe.1G140700_v2.0.a1 Prupe.1G140700_v2.0.a1 Prupe.1G140700_v2.0.a1
pyrus_communis	pycom13g14810
rosa_chinensis	RchiOBHm_Chr4g0421321
rosa_laevigata	RLG00000007697
rosa_multiflora	Rmu_sc0015713.1_g000006
rosa_roxburghii	Rroxscaffold_5G00363560
rosa_rugosa	Rorug04G0168900
rosa_samantha	Rh4AG230900 Rh4BG233900 Rh4CG245300 Rh4DG229500
rosa_wichuraiana	Rw4G020300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1902
Acc36I	ACCTGC	1 cut(s)	714
AccB1I	GGYRCC	1 cut(s)	456
AccBSI	CCGCTC	1 cut(s)	2245
AccI	GTMKAC	1 cut(s)	1868
AccII	CGCG	6 cut(s)	7, 159, 179, 252, 2066, 2977
AciI	CCGC	8 cut(s)	117, 141, 157, 159, 177, 1058, 1369, 2245
AclWI	GGATC	4 cut(s)	2477, 2717, 2796, 2815
AcoI	YGGCCR	2 cut(s)	909, 1208
AcsI	RAATTY	6 cut(s)	713, 991, 1691, 2111, 2132, 2325
AcuI	CTGAAG	6 cut(s)	258, 455, 498, 1046, 2517, 2837
AcyI	GRCGYC	2 cut(s)	138, 457
AfaI	GTAC	4 cut(s)	1310, 2403, 2852, 3118
AfiI	CCNNNNNNNGG	6 cut(s)	111, 439, 508, 739, 1177, 2574
AjiI	CACGTC	1 cut(s)	2940
AjnI	CCWGG	4 cut(s)	21, 260, 1438, 1678
AloI	GAACNNNNNNTCC	2 cut(s)	2805, 2837
Alw21I	GWGCWC	3 cut(s)	99, 1816, 2302
Alw26I	GTCTC	4 cut(s)	31, 1092, 1455, 3055
AlwI	GGATC	4 cut(s)	2477, 2717, 2796, 2815
AlwNI	CAGNNNCTG	1 cut(s)	2580
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	9 cut(s)	102, 113, 174, 258, 730, 909, 1208, 1442, 2577
ApeKI	GCWGC	6 cut(s)	326, 382, 1390, 1567, 2927, 3127
ApoI	RAATTY	6 cut(s)	713, 991, 1691, 2111, 2132, 2325
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AseI	ATTAAT	1 cut(s)	3014
Asp700I	GAANNNNTTC	1 cut(s)	1146
AspLEI	GCGC	6 cut(s)	7, 181, 459, 2253, 2292, 2979
AspS9I	GGNCC	6 cut(s)	114, 531, 731, 1201, 1442, 2577
AsuHPI	GGTGA	7 cut(s)	428, 454, 1172, 1652, 1939, 2002, 2934
AsuII	TTCGAA	1 cut(s)	1004
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	2 cut(s)	531, 1201
BalI	TGGCCA	1 cut(s)	911
BanI	GGYRCC	1 cut(s)	456
BanII	GRGCYC	3 cut(s)	13, 99, 3143
BarI	GAAGNNNNNNTAC	2 cut(s)	2240, 2272
BbsI	GAAGAC	2 cut(s)	1031, 1650
Bbv12I	GWGCWC	3 cut(s)	99, 1816, 2302
BbvI	GCAGC	6 cut(s)	338, 394, 1402, 1554, 2939, 3139
BceAI	ACGGC	3 cut(s)	89, 560, 921
BcgI	CGANNNNNNTGC	2 cut(s)	2642, 2676
BciT130I	CCWGG	4 cut(s)	23, 262, 1440, 1680
BciVI	GTATCC	1 cut(s)	1598
BcoDI	GTCTC	4 cut(s)	31, 1092, 1455, 3055
BfaI	CTAG	5 cut(s)	1536, 1571, 2739, 2810, 2997
BfmI	CTRYAG	3 cut(s)	1325, 1746, 2451
BfoI	RGCGCY	1 cut(s)	460
BfuAI	ACCTGC	1 cut(s)	714
BfuI	GTATCC	1 cut(s)	1598
BglII	AGATCT	1 cut(s)	1333
BlpI	GCTNAGC	3 cut(s)	1434, 1950, 2088
BmcAI	AGTACT	1 cut(s)	1310
Bme1390I	CCNGG	4 cut(s)	23, 262, 1440, 1680
Bme18I	GGWCC	2 cut(s)	531, 1201
BmeT110I	CYCGRG	1 cut(s)	98
BmgBI	CACGTC	1 cut(s)	2940
BmgT120I	GGNCC	6 cut(s)	114, 531, 731, 1201, 1442, 2577
BmiI	GGNNCC	6 cut(s)	66, 163, 458, 532, 750, 1781
BmrFI	CCNGG	4 cut(s)	23, 262, 1440, 1680
BmrI	ACTGGG	1 cut(s)	2920
BmsI	GCATC	8 cut(s)	304, 325, 437, 1642, 1654, 1909, 2086, 2113
BmuI	ACTGGG	1 cut(s)	2920
BpiI	GAAGAC	2 cut(s)	1031, 1650
BplI	GAGNNNNNCTC	8 cut(s)	137, 169, 2522, 2554, 3052, 3084, 3128, 3160
BpmI	CTGGAG	3 cut(s)	1479, 1740, 2286
Bpu10I	CCTNAGC	1 cut(s)	2664
Bpu1102I	GCTNAGC	3 cut(s)	1434, 1950, 2088
Bpu14I	TTCGAA	1 cut(s)	1004
BpuEI	CTTGAG	1 cut(s)	1770
Bsa29I	ATCGAT	1 cut(s)	1662
BsaAI	YACGTR	1 cut(s)	854
BsaHI	GRCGYC	2 cut(s)	138, 457
BsaI	GGTCTC	3 cut(s)	31, 1092, 1455
BsaWI	WCCGGW	2 cut(s)	533, 1851
Bsc4I	CCNNNNNNNGG	6 cut(s)	111, 439, 508, 739, 1177, 2574
Bse118I	RCCGGY	2 cut(s)	181, 728
Bse1I	ACTGG	6 cut(s)	614, 776, 1462, 1639, 2225, 2915
Bse3DI	GCAATG	1 cut(s)	238
BseBI	CCWGG	4 cut(s)	23, 262, 1440, 1680
BseCI	ATCGAT	1 cut(s)	1662
BseLI	CCNNNNNNNGG	6 cut(s)	111, 439, 508, 739, 1177, 2574
BseMI	GCAATG	1 cut(s)	238
BseNI	ACTGG	6 cut(s)	614, 776, 1462, 1639, 2225, 2915
BseRI	GAGGAG	7 cut(s)	71, 74, 77, 104, 107, 2657, 2745
BseXI	GCAGC	6 cut(s)	338, 394, 1402, 1554, 2939, 3139
BseYI	CCCAGC	1 cut(s)	872
BsgI	GTGCAG	1 cut(s)	1843
Bsh1236I	CGCG	6 cut(s)	7, 159, 179, 252, 2066, 2977
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	9 cut(s)	104, 115, 176, 260, 732, 911, 1210, 1444, 2579
BshNI	GGYRCC	1 cut(s)	456
BshVI	ATCGAT	1 cut(s)	1662
BsiEI	CGRYCG	1 cut(s)	186
BsiHKAI	GWGCWC	3 cut(s)	99, 1816, 2302
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	5 cut(s)	182, 534, 729, 1207, 1852
BslFI	GGGAC	2 cut(s)	544, 783
BslI	CCNNNNNNNGG	6 cut(s)	111, 439, 508, 739, 1177, 2574
BsmAI	GTCTC	4 cut(s)	31, 1092, 1455, 3055
BsmFI	GGGAC	2 cut(s)	544, 783
BsmI	GAATGC	1 cut(s)	503
BsnI	GGCC	9 cut(s)	104, 115, 176, 260, 732, 911, 1210, 1444, 2579
Bso31I	GGTCTC	3 cut(s)	31, 1092, 1455
BsoBI	CYCGRG	1 cut(s)	98
Bsp119I	TTCGAA	1 cut(s)	1004
Bsp1286I	GDGCHC	5 cut(s)	13, 99, 1816, 2302, 3143
Bsp1407I	TGTACA	1 cut(s)	2850
Bsp143I	GATC	7 cut(s)	69, 1333, 1807, 2482, 2709, 2788, 2820
Bsp1720I	GCTNAGC	3 cut(s)	1434, 1950, 2088
Bsp19I	CCATGG	1 cut(s)	2804
Bsp68I	TCGCGA	1 cut(s)	2066
BspACI	CCGC	8 cut(s)	117, 141, 157, 159, 177, 1058, 1369, 2245
BspANI	GGCC	9 cut(s)	104, 115, 176, 260, 732, 911, 1210, 1444, 2579
BspDI	ATCGAT	1 cut(s)	1662
BspFNI	CGCG	6 cut(s)	7, 159, 179, 252, 2066, 2977
BspHI	TCATGA	2 cut(s)	1075, 2874
BspLI	GGNNCC	6 cut(s)	66, 163, 458, 532, 750, 1781
BspMAI	CTGCAG	2 cut(s)	1329, 1750
BspMI	ACCTGC	1 cut(s)	714
BspPI	GGATC	4 cut(s)	2477, 2717, 2796, 2815
BspQI	GCTCTTC	1 cut(s)	2493
BspT104I	TTCGAA	1 cut(s)	1004
BspT107I	GGYRCC	1 cut(s)	456
BspTNI	GGTCTC	3 cut(s)	31, 1092, 1455
BsrBI	CCGCTC	1 cut(s)	2245
BsrDI	GCAATG	1 cut(s)	238
BsrFI	RCCGGY	2 cut(s)	181, 728
BsrGI	TGTACA	1 cut(s)	2850
BsrI	ACTGG	6 cut(s)	614, 776, 1462, 1639, 2225, 2915
BssAI	RCCGGY	2 cut(s)	181, 728
BssMI	GATC	7 cut(s)	69, 1333, 1807, 2482, 2709, 2788, 2820
BssNAI	GTATAC	1 cut(s)	1869
BssNI	GRCGYC	2 cut(s)	138, 457
BssT1I	CCWWGG	5 cut(s)	763, 1426, 2022, 2293, 2804
Bst1107I	GTATAC	1 cut(s)	1869
Bst2UI	CCWGG	4 cut(s)	23, 262, 1440, 1680
Bst4CI	ACNGT	5 cut(s)	1037, 1308, 1649, 1963, 2870
BstACI	GRCGYC	2 cut(s)	138, 457
BstAPI	GCANNNNNTGC	2 cut(s)	323, 2287
BstAUI	TGTACA	1 cut(s)	2850
BstBAI	YACGTR	1 cut(s)	854
BstBI	TTCGAA	1 cut(s)	1004
BstC8I	GCNNGC	9 cut(s)	9, 117, 810, 947, 1800, 1911, 2336, 3070, 3087
BstDSI	CCRYGG	2 cut(s)	157, 2804
BstEII	GGTNACC	1 cut(s)	701
BstENI	CCTNNNNNAGG	3 cut(s)	437, 506, 2572
BstFNI	CGCG	6 cut(s)	7, 159, 179, 252, 2066, 2977
BstH2I	RGCGCY	1 cut(s)	460
BstHHI	GCGC	6 cut(s)	7, 181, 459, 2253, 2292, 2979
BstKTI	GATC	7 cut(s)	72, 1336, 1810, 2485, 2712, 2791, 2823
BstMAI	GTCTC	4 cut(s)	31, 1092, 1455, 3055
BstMBI	GATC	7 cut(s)	69, 1333, 1807, 2482, 2709, 2788, 2820
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	9 cut(s)	116, 323, 335, 407, 553, 942, 1919, 2287, 2383
BstNI	CCWGG	4 cut(s)	23, 262, 1440, 1680
BstNSI	RCATGY	2 cut(s)	1291, 2338
BstPI	GGTNACC	1 cut(s)	701
BstSCI	CCNGG	4 cut(s)	21, 260, 1438, 1678
BstSFI	CTRYAG	3 cut(s)	1325, 1746, 2451
BstUI	CGCG	6 cut(s)	7, 159, 179, 252, 2066, 2977
BstV1I	GCAGC	6 cut(s)	338, 394, 1402, 1554, 2939, 3139
BstV2I	GAAGAC	2 cut(s)	1031, 1650
BstX2I	RGATCY	3 cut(s)	1333, 2482, 2820
BstXI	CCANNNNNNTGG	1 cut(s)	599
BstYI	RGATCY	3 cut(s)	1333, 2482, 2820
BstZ17I	GTATAC	1 cut(s)	1869
Bsu15I	ATCGAT	1 cut(s)	1662
BsuI	GTATCC	1 cut(s)	1598
BsuRI	GGCC	9 cut(s)	104, 115, 176, 260, 732, 911, 1210, 1444, 2579
BsuTUI	ATCGAT	1 cut(s)	1662
BtgI	CCRYGG	2 cut(s)	157, 2804
BtgZI	GCGATG	1 cut(s)	2047
BtrI	CACGTC	1 cut(s)	2940
BtsIMutI	CAGTG	1 cut(s)	1860
BtuMI	TCGCGA	1 cut(s)	2066
BveI	ACCTGC	1 cut(s)	714
Cac8I	GCNNGC	9 cut(s)	9, 117, 810, 947, 1800, 1911, 2336, 3070, 3087
CaiI	CAGNNNCTG	1 cut(s)	2580
CciI	TCATGA	2 cut(s)	1075, 2874
CfoI	GCGC	6 cut(s)	7, 181, 459, 2253, 2292, 2979
Cfr10I	RCCGGY	2 cut(s)	181, 728
Cfr13I	GGNCC	6 cut(s)	114, 531, 731, 1201, 1442, 2577
Cfr42I	CCGCGG	1 cut(s)	160
ClaI	ATCGAT	1 cut(s)	1662
CseI	GACGC	2 cut(s)	146, 562
Csp6I	GTAC	4 cut(s)	1309, 2402, 2851, 3117
CviQI	GTAC	4 cut(s)	1309, 2402, 2851, 3117
DinI	GGCGCC	1 cut(s)	458
DpnI	GATC	7 cut(s)	71, 1335, 1809, 2484, 2711, 2790, 2822
DpnII	GATC	7 cut(s)	69, 1333, 1807, 2482, 2709, 2788, 2820
DraI	TTTAAA	1 cut(s)	1600
EaeI	YGGCCR	2 cut(s)	909, 1208
Ecl136II	GAGCTC	1 cut(s)	97
Eco130I	CCWWGG	5 cut(s)	763, 1426, 2022, 2293, 2804
Eco24I	GRGCYC	3 cut(s)	13, 99, 3143
Eco31I	GGTCTC	3 cut(s)	31, 1092, 1455
Eco47I	GGWCC	2 cut(s)	531, 1201
Eco53kI	GAGCTC	1 cut(s)	97
Eco57I	CTGAAG	6 cut(s)	258, 455, 498, 1046, 2517, 2837
Eco88I	CYCGRG	1 cut(s)	98
Eco91I	GGTNACC	1 cut(s)	701
EcoICRI	GAGCTC	1 cut(s)	97
EcoNI	CCTNNNNNAGG	3 cut(s)	437, 506, 2572
EcoO109I	RGGNCCY	2 cut(s)	1201, 2577
EcoO65I	GGTNACC	1 cut(s)	701
EcoRI	GAATTC	3 cut(s)	713, 991, 2325
EcoRII	CCWGG	4 cut(s)	21, 260, 1438, 1678
EcoT14I	CCWWGG	5 cut(s)	763, 1426, 2022, 2293, 2804
EcoT22I	ATGCAT	1 cut(s)	2885
EcoT38I	GRGCYC	3 cut(s)	13, 99, 3143
EgeI	GGCGCC	1 cut(s)	458
EheI	GGCGCC	1 cut(s)	458
ErhI	CCWWGG	5 cut(s)	763, 1426, 2022, 2293, 2804
FalI	AAGNNNNNCTT	6 cut(s)	914, 946, 1593, 1625, 2180, 2212
FaqI	GGGAC	2 cut(s)	544, 783
FauI	CCCGC	2 cut(s)	124, 164
FauNDI	CATATG	1 cut(s)	738
FblI	GTMKAC	1 cut(s)	1868
FriOI	GRGCYC	3 cut(s)	13, 99, 3143
FspBI	CTAG	5 cut(s)	1536, 1571, 2739, 2810, 2997
GlaI	GCGC	6 cut(s)	6, 180, 458, 2252, 2291, 2978
GsaI	CCCAGC	1 cut(s)	876
GsuI	CTGGAG	3 cut(s)	1479, 1740, 2286
HaeII	RGCGCY	1 cut(s)	460
HaeIII	GGCC	9 cut(s)	104, 115, 176, 260, 732, 911, 1210, 1444, 2579
HapII	CCGG	5 cut(s)	182, 534, 729, 1207, 1852
HgaI	GACGC	2 cut(s)	146, 562
HhaI	GCGC	6 cut(s)	7, 181, 459, 2253, 2292, 2979
Hin1I	GRCGYC	2 cut(s)	138, 457
Hin6I	GCGC	6 cut(s)	5, 179, 457, 2251, 2290, 2977
HinP1I	GCGC	6 cut(s)	5, 179, 457, 2251, 2290, 2977
HincII	GTYRAC	1 cut(s)	759
HindII	GTYRAC	1 cut(s)	759
HindIII	AAGCTT	3 cut(s)	1907, 2894, 3083
HpaII	CCGG	5 cut(s)	182, 534, 729, 1207, 1852
HphI	GGTGA	7 cut(s)	428, 454, 1172, 1652, 1939, 2002, 2934
Hpy166II	GTNNAC	4 cut(s)	759, 1253, 1869, 2890
Hpy8I	GTNNAC	4 cut(s)	759, 1253, 1869, 2890
Hpy99I	CGWCG	5 cut(s)	38, 110, 131, 134, 197
HpyCH4III	ACNGT	5 cut(s)	1037, 1308, 1649, 1963, 2870
HpyCH4IV	ACGT	4 cut(s)	853, 1363, 2518, 2939
HpyF10VI	GCNNNNNNNGC	9 cut(s)	116, 323, 335, 407, 553, 942, 1919, 2287, 2383
HpySE526I	ACGT	4 cut(s)	853, 1363, 2518, 2939
Hsp92I	GRCGYC	2 cut(s)	138, 457
HspAI	GCGC	6 cut(s)	5, 179, 457, 2251, 2290, 2977
KasI	GGCGCC	1 cut(s)	456
KspI	CCGCGG	1 cut(s)	160
Kzo9I	GATC	7 cut(s)	69, 1333, 1807, 2482, 2709, 2788, 2820
LguI	GCTCTTC	1 cut(s)	2493
LmnI	GCTCC	5 cut(s)	64, 94, 167, 754, 2305
Lsp1109I	GCAGC	6 cut(s)	338, 394, 1402, 1554, 2939, 3139
LweI	GCATC	8 cut(s)	304, 325, 437, 1642, 1654, 1909, 2086, 2113
MaeI	CTAG	5 cut(s)	1536, 1571, 2739, 2810, 2997
MaeII	ACGT	4 cut(s)	853, 1363, 2518, 2939
MaeIII	GTNAC	9 cut(s)	416, 701, 892, 1290, 1506, 2600, 2792, 2864, 2940
MalI	GATC	7 cut(s)	71, 1335, 1809, 2484, 2711, 2790, 2822
MbiI	CCGCTC	1 cut(s)	2245
MboI	GATC	7 cut(s)	69, 1333, 1807, 2482, 2709, 2788, 2820
MflI	RGATCY	3 cut(s)	1333, 2482, 2820
MhlI	GDGCHC	5 cut(s)	13, 99, 1816, 2302, 3143
MlsI	TGGCCA	1 cut(s)	911
MluNI	TGGCCA	1 cut(s)	911
Mly113I	GGCGCC	1 cut(s)	457
MlyI	GAGTC	2 cut(s)	116, 413
MmeI	TCCRAC	5 cut(s)	57, 150, 1598, 2458, 2766
Mox20I	TGGCCA	1 cut(s)	911
Mph1103I	ATGCAT	1 cut(s)	2885
MroXI	GAANNNNTTC	1 cut(s)	1146
MscI	TGGCCA	1 cut(s)	911
MslI	CAYNNNNRTG	1 cut(s)	852
Msp20I	TGGCCA	1 cut(s)	911
MspA1I	CMGCKG	3 cut(s)	159, 329, 945
MspI	CCGG	5 cut(s)	182, 534, 729, 1207, 1852
MspR9I	CCNGG	4 cut(s)	23, 262, 1440, 1680
Mva1269I	GAATGC	1 cut(s)	503
MvaI	CCWGG	4 cut(s)	23, 262, 1440, 1680
MvnI	CGCG	6 cut(s)	7, 159, 179, 252, 2066, 2977
MwoI	GCNNNNNNNGC	9 cut(s)	116, 323, 335, 407, 553, 942, 1919, 2287, 2383
NarI	GGCGCC	1 cut(s)	457
NcoI	CCATGG	1 cut(s)	2804
NdeI	CATATG	1 cut(s)	738
NdeII	GATC	7 cut(s)	69, 1333, 1807, 2482, 2709, 2788, 2820
NlaIV	GGNNCC	6 cut(s)	66, 163, 458, 532, 750, 1781
NmeAIII	GCCGAG	2 cut(s)	91, 169
NmuCI	GTSAC	5 cut(s)	416, 1290, 2600, 2864, 2940
NruI	TCGCGA	1 cut(s)	2066
NsiI	ATGCAT	1 cut(s)	2885
NspI	RCATGY	2 cut(s)	1291, 2338
NspV	TTCGAA	1 cut(s)	1004
PaeI	GCATGC	1 cut(s)	2338
PaeR7I	CTCGAG	1 cut(s)	98
PagI	TCATGA	2 cut(s)	1075, 2874
PciSI	GCTCTTC	1 cut(s)	2493
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PctI	GAATGC	1 cut(s)	503
PdmI	GAANNNNTTC	1 cut(s)	1146
PleI	GAGTC	2 cut(s)	116, 413
PluTI	GGCGCC	1 cut(s)	460
PpsI	GAGTC	2 cut(s)	116, 413
Ppu21I	YACGTR	1 cut(s)	854
PpuMI	RGGWCCY	1 cut(s)	1201
PshBI	ATTAAT	1 cut(s)	3014
PsiI	TTATAA	1 cut(s)	1902
Psp124BI	GAGCTC	1 cut(s)	99
Psp5II	RGGWCCY	1 cut(s)	1201
Psp6I	CCWGG	4 cut(s)	21, 260, 1438, 1678
PspEI	GGTNACC	1 cut(s)	701
PspFI	CCCAGC	1 cut(s)	872
PspGI	CCWGG	4 cut(s)	21, 260, 1438, 1678
PspN4I	GGNNCC	6 cut(s)	66, 163, 458, 532, 750, 1781
PspPI	GGNCC	6 cut(s)	114, 531, 731, 1201, 1442, 2577
PspPPI	RGGWCCY	1 cut(s)	1201
PspXI	VCTCGAGB	1 cut(s)	98
PstI	CTGCAG	2 cut(s)	1329, 1750
PstNI	CAGNNNCTG	1 cut(s)	2580
PsuI	RGATCY	3 cut(s)	1333, 2482, 2820
PvuII	CAGCTG	2 cut(s)	329, 945
RruI	TCGCGA	1 cut(s)	2066
RsaI	GTAC	4 cut(s)	1310, 2403, 2852, 3118
RsaNI	GTAC	4 cut(s)	1309, 2402, 2851, 3117
RseI	CAYNNNNRTG	1 cut(s)	852
SacI	GAGCTC	1 cut(s)	99
SacII	CCGCGG	1 cut(s)	160
SapI	GCTCTTC	1 cut(s)	2493
Sau3AI	GATC	7 cut(s)	69, 1333, 1807, 2482, 2709, 2788, 2820
Sau96I	GGNCC	6 cut(s)	114, 531, 731, 1201, 1442, 2577
ScaI	AGTACT	1 cut(s)	1310
SchI	GAGTC	2 cut(s)	116, 413
ScrFI	CCNGG	4 cut(s)	23, 262, 1440, 1680
SduI	GDGCHC	5 cut(s)	13, 99, 1816, 2302, 3143
SfaNI	GCATC	8 cut(s)	304, 325, 437, 1642, 1654, 1909, 2086, 2113
SfcI	CTRYAG	3 cut(s)	1325, 1746, 2451
SfoI	GGCGCC	1 cut(s)	458
Sfr274I	CTCGAG	1 cut(s)	98
Sfr303I	CCGCGG	1 cut(s)	160
SfuI	TTCGAA	1 cut(s)	1004
SgrBI	CCGCGG	1 cut(s)	160
SinI	GGWCC	2 cut(s)	531, 1201
SlaI	CTCGAG	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	852
SmlI	CTYRAG	2 cut(s)	98, 1785
SmoI	CTYRAG	2 cut(s)	98, 1785
SphI	GCATGC	1 cut(s)	2338
SsiI	CCGC	8 cut(s)	117, 141, 157, 159, 177, 1058, 1369, 2245
SspDI	GGCGCC	1 cut(s)	456
SspI	AATATT	2 cut(s)	309, 1548
SspMI	CTAG	5 cut(s)	1536, 1571, 2739, 2810, 2997
SstI	GAGCTC	1 cut(s)	99
StyD4I	CCNGG	4 cut(s)	21, 260, 1438, 1678
StyI	CCWWGG	5 cut(s)	763, 1426, 2022, 2293, 2804
TaaI	ACNGT	5 cut(s)	1037, 1308, 1649, 1963, 2870
TaiI	ACGT	4 cut(s)	856, 1366, 2521, 2942
TatI	WGTACW	2 cut(s)	1308, 2850
TauI	GCSGC	4 cut(s)	143, 162, 179, 1372
TscAI	CASTG	1 cut(s)	1867
TseFI	GTSAC	5 cut(s)	416, 1290, 2600, 2864, 2940
TseI	GCWGC	6 cut(s)	326, 382, 1390, 1567, 2927, 3127
Tsp45I	GTSAC	5 cut(s)	416, 1290, 2600, 2864, 2940
TspRI	CASTG	1 cut(s)	1867
VpaK11BI	GGWCC	2 cut(s)	531, 1201
VspI	ATTAAT	1 cut(s)	3014
XagI	CCTNNNNNAGG	3 cut(s)	437, 506, 2572
XapI	RAATTY	6 cut(s)	713, 991, 1691, 2111, 2132, 2325
XceI	RCATGY	2 cut(s)	1291, 2338
XcmI	CCANNNNNNNNNTGG	1 cut(s)	694
XhoI	CTCGAG	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	1868
XmnI	GAANNNNTTC	1 cut(s)	1146
XspI	CTAG	5 cut(s)	1536, 1571, 2739, 2810, 2997
ZrmI	AGTACT	1 cut(s)	1310
Zsp2I	ATGCAT	1 cut(s)	2885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.