RLG00000008439

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0011554
Physical Location & Seq
Forward (+)
30598821 .. 30603406
4586 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008439

Sequence Viewer

Length: 1332 bp
ATGAAGACTCTGCAAATCGGTAAAGGGAGGGTGAGACTTTGTGATTGTTCCAAAACGACGACGGATCAGGCGGCGGAGACGAGGACGGAGCCGGACTGTATGGTAGGTCCGGTGGGGGAGGCAAGAAGGGGTGGACATGACTGTATGGTTGGGTTGGAGTGTTTTCTGGACATCGTCAGGGCTTTAGGGATGGGCTCGTGTCTCTCCATCACCGGTGACAGCCCCGCCGGCTACGGCCGGGTGTCTTCCCCGGCGCAGAGCAACAAGAGGAGGAAGAGGCTGACCGGCAACTCGTCGTCACCGGTTTCGTCGGCGGCGGCGAGTTCCATGGAGATGTGGCTGCACAGGGTTCCGGGGAGGTTGTTCCTGAATGGCTTCTCTGATGTGGCTTCCCTGTTCAGCAAGCAAGGCAAGAAGGGTGTCAATCAGGACGCTATGATTGCTTGGGAGAATTTCGGCTCCAAGGAAGATACAATATTTTGTGGTGTTTTTGATGGGCATGGTCCTTGTGGTCATATGGTGGCAAAGAAGGTGAGGGATTCTCTACCTTTGAAGGTCAGCTCACAATGGGTGTTGAACACCAGCGCCGCGGATACTTACCACGCCGGTGCATCTGTGGAGAACAAGGACAGCCATGGTGAATTTTTCGCCACATTGAAAGATTCGTTTTTGAAGGCTTTTAAGGTCATGGACAAGGAGCTTAAGTTGCATCCTCGTATTGATTGCTATTGCAGTGGGACAACTGCAGTTACGTTGGTCAAGCAGGGTCAGGATCTTGTTATTGCAAATATTGGGGACTCTAGAGCTGTGCTAGGCACAAGAGATGAAGGGGGTTCTCTCGTTGCAGTTCAGTTGACTGTAGACTTAAAACCAAATCTTCCAAGGGAAGCTGAGAGGATCACGTTATGTAAAGGTCGAGTATTTGCTCTCCACAACGAGCCTGATGTCACTCGAGTTTGGTTGCCCAACAGTAATTCACCTGGGCTTGCTATGGCCCGGGCTTTTGGAGATTTCTGCCTAAAGGATTATGGTTTAATCTCTGTCCCTGATGTTTCTTATCGTCGCCTCACTGAGAAGGATGAATTTGTAGTACTGGCTACAGATGGGATCTGGGATGTTCTCTCAAACAAAGAAGTTGTGGATATAGTGGCAGCAACCCCACGACCCTCTGCTGCTCGAGCCCTGGTGGAGTCAGCCAATCGAGCTTGGAGATTTAAACACCCATATGCTAAGGTTGATGATTGTGCTGTTGTTTGCCTCTTCCTCACTTCCGGTGCTTCAGACAATACTTCCCTTTCCTCACCAGAGGAGAAGAAAGTGAACTCAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

444

Amino Acids

47.95

Weight (kDa)

8.32

Isoelectric Point (pI)

35.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 136 - 386 7.1e-42 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 861
AccII CGCG 1 cut(s) 590
AciI CCGC 7 cut(s) 71, 74, 225, 314, 317, 588, 590
AclWI GGATC 4 cut(s) 72, 780, 905, 1115
AcoI YGGCCR 1 cut(s) 235
AcsI RAATTY 3 cut(s) 451, 641, 1082
AcuI CTGAAG 1 cut(s) 1263
AfaI GTAC 1 cut(s) 1092
AflII CTTAAG 1 cut(s) 701
AgeI ACCGGT 2 cut(s) 212, 301
AgsI TTSAA 4 cut(s) 553, 577, 658, 673
AjnI CCWGG 2 cut(s) 979, 1182
AleI CACNNNNGTG 1 cut(s) 606
AluBI AGCT 5 cut(s) 561, 700, 806, 890, 1205
AluI AGCT 5 cut(s) 561, 700, 806, 890, 1205
Alw26I GTCTC 3 cut(s) 28, 71, 206
AlwI GGATC 4 cut(s) 72, 780, 905, 1115
Ama87I CYCGRG 3 cut(s) 951, 996, 1176
AoxI GGCC 2 cut(s) 235, 993
ApeKI GCWGC 3 cut(s) 340, 1151, 1172
ApoI RAATTY 3 cut(s) 451, 641, 1082
AsiGI ACCGGT 2 cut(s) 212, 301
Asp700I GAANNNNTTC 1 cut(s) 374
AspLEI GCGC 2 cut(s) 256, 587
AspS9I GGNCC 3 cut(s) 107, 503, 994
AsuC2I CCSGG 5 cut(s) 239, 251, 354, 997, 998
AsuHPI GGTGA 8 cut(s) 43, 202, 227, 291, 544, 650, 969, 1293
AvaI CYCGRG 3 cut(s) 951, 996, 1176
AvaII GGWCC 2 cut(s) 107, 503
BanII GRGCYC 2 cut(s) 197, 1183
BauI CACGAG 1 cut(s) 196
BbsI GAAGAC 2 cut(s) 11, 237
BbvI GCAGC 3 cut(s) 327, 1159, 1163
BccI CCATC 4 cut(s) 184, 215, 488, 1097
BceAI ACGGC 1 cut(s) 250
BciT130I CCWGG 2 cut(s) 981, 1184
BciVI GTATCC 1 cut(s) 586
BcnI CCSGG 5 cut(s) 239, 251, 354, 997, 998
BcoDI GTCTC 3 cut(s) 28, 71, 206
BfaI CTAG 2 cut(s) 801, 812
BfmI CTRYAG 3 cut(s) 744, 858, 1098
BfoI RGCGCY 1 cut(s) 588
BfrI CTTAAG 1 cut(s) 701
BfuI GTATCC 1 cut(s) 586
BglI GCCNNNNNGGC 1 cut(s) 228
BisI GCNGC 7 cut(s) 72, 315, 318, 341, 588, 1152, 1173
BlsI GCNGC 7 cut(s) 73, 316, 319, 342, 589, 1153, 1174
BmcAI AGTACT 1 cut(s) 1092
Bme1390I CCNGG 7 cut(s) 239, 251, 354, 981, 997, 998, 1184
Bme18I GGWCC 2 cut(s) 107, 503
BmeT110I CYCGRG 3 cut(s) 951, 996, 1176
BmgT120I GGNCC 3 cut(s) 107, 503, 994
BmiI GGNNCC 3 cut(s) 90, 351, 460
BmrFI CCNGG 7 cut(s) 239, 251, 354, 981, 997, 998, 1184
BmsI GCATC 2 cut(s) 620, 718
BpiI GAAGAC 2 cut(s) 11, 237
BplI GAGNNNNNCTC 2 cut(s) 526, 558
Bpu10I CCTNAGC 1 cut(s) 1230
BpuMI CCSGG 5 cut(s) 239, 251, 354, 997, 998
BsaWI WCCGGW 4 cut(s) 109, 212, 301, 1271
BsaXI ACNNNNNCTCC 2 cut(s) 689, 719
Bse118I RCCGGY 5 cut(s) 212, 227, 284, 301, 605
Bse1I ACTGG 1 cut(s) 1098
BseBI CCWGG 2 cut(s) 981, 1184
BseGI GGATG 4 cut(s) 195, 709, 1084, 1120
BseMII CTCAG 2 cut(s) 882, 1062
BseNI ACTGG 1 cut(s) 1098
BseRI GAGGAG 2 cut(s) 283, 1322
BseX3I CGGCCG 1 cut(s) 235
BseXI GCAGC 3 cut(s) 327, 1159, 1163
BsgI GTGCAG 1 cut(s) 326
Bsh1236I CGCG 1 cut(s) 590
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 2 cut(s) 237, 995
BshTI ACCGGT 2 cut(s) 212, 301
BsiEI CGRYCG 1 cut(s) 238
BsiHKCI CYCGRG 3 cut(s) 951, 996, 1176
BslFI GGGAC 3 cut(s) 751, 809, 1028
BsmAI GTCTC 3 cut(s) 28, 71, 206
BsmBI CGTCTC 1 cut(s) 71
BsmFI GGGAC 3 cut(s) 751, 809, 1028
BsnI GGCC 2 cut(s) 237, 995
BsoBI CYCGRG 3 cut(s) 951, 996, 1176
Bsp1286I GDGCHC 2 cut(s) 197, 1183
Bsp143I GATC 4 cut(s) 64, 772, 897, 1107
Bsp19I CCATGG 2 cut(s) 327, 634
BspACI CCGC 7 cut(s) 71, 74, 225, 314, 317, 588, 590
BspANI GGCC 2 cut(s) 237, 995
BspCNI CTCAG 2 cut(s) 883, 1063
BspFNI CGCG 1 cut(s) 590
BspLI GGNNCC 3 cut(s) 90, 351, 460
BspMAI CTGCAG 1 cut(s) 748
BspPI GGATC 4 cut(s) 72, 780, 905, 1115
BspTI CTTAAG 1 cut(s) 701
BsrFI RCCGGY 5 cut(s) 212, 227, 284, 301, 605
BsrI ACTGG 1 cut(s) 1098
BssAI RCCGGY 5 cut(s) 212, 227, 284, 301, 605
BssMI GATC 4 cut(s) 64, 772, 897, 1107
BssSI CACGAG 1 cut(s) 196
BssT1I CCWWGG 4 cut(s) 327, 462, 634, 881
Bst2BI CACGAG 1 cut(s) 196
Bst2UI CCWGG 2 cut(s) 981, 1184
Bst4CI ACNGT 4 cut(s) 98, 143, 859, 971
Bst6I CTCTTC 2 cut(s) 269, 1265
BstAFI CTTAAG 1 cut(s) 701
BstC8I GCNNGC 3 cut(s) 229, 404, 987
BstDEI CTNAG 3 cut(s) 891, 1071, 1230
BstDSI CCRYGG 3 cut(s) 327, 588, 634
BstF5I GGATG 4 cut(s) 195, 709, 1084, 1120
BstFNI CGCG 1 cut(s) 590
BstH2I RGCGCY 1 cut(s) 588
BstHHI GCGC 2 cut(s) 256, 587
BstKTI GATC 4 cut(s) 67, 775, 900, 1110
BstMAI GTCTC 3 cut(s) 28, 71, 206
BstMBI GATC 4 cut(s) 64, 772, 897, 1107
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 6 cut(s) 228, 408, 440, 706, 1178, 1202
BstNI CCWGG 2 cut(s) 981, 1184
BstSCI CCNGG 7 cut(s) 237, 249, 352, 979, 995, 996, 1182
BstSFI CTRYAG 3 cut(s) 744, 858, 1098
BstUI CGCG 1 cut(s) 590
BstV1I GCAGC 3 cut(s) 327, 1159, 1163
BstV2I GAAGAC 2 cut(s) 11, 237
BstX2I RGATCY 2 cut(s) 772, 1107
BstYI RGATCY 2 cut(s) 772, 1107
BstZI CGGCCG 1 cut(s) 235
BsuI GTATCC 1 cut(s) 586
BsuRI GGCC 2 cut(s) 237, 995
BtgI CCRYGG 3 cut(s) 327, 588, 634
BtsCI GGATG 4 cut(s) 195, 709, 1084, 1120
BtsI GCAGTG 1 cut(s) 739
BtsIMutI CAGTG 2 cut(s) 739, 1068
Cac8I GCNNGC 3 cut(s) 229, 404, 987
CfoI GCGC 2 cut(s) 256, 587
Cfr10I RCCGGY 5 cut(s) 212, 227, 284, 301, 605
Cfr13I GGNCC 3 cut(s) 107, 503, 994
Cfr42I CCGCGG 1 cut(s) 591
Cfr9I CCCGGG 1 cut(s) 996
CseI GACGC 1 cut(s) 440
Csp6I GTAC 1 cut(s) 1091
CspAI ACCGGT 2 cut(s) 212, 301
CviAII CATG 5 cut(s) 137, 328, 500, 635, 688
CviQI GTAC 1 cut(s) 1091
DdeI CTNAG 3 cut(s) 891, 1071, 1230
DpnI GATC 4 cut(s) 66, 774, 899, 1109
DpnII GATC 4 cut(s) 64, 772, 897, 1107
DraI TTTAAA 1 cut(s) 1216
EaeI YGGCCR 1 cut(s) 235
EagI CGGCCG 1 cut(s) 235
Eam1104I CTCTTC 2 cut(s) 269, 1265
EarI CTCTTC 2 cut(s) 269, 1265
EciI GGCGGA 1 cut(s) 89
EclXI CGGCCG 1 cut(s) 235
Eco130I CCWWGG 4 cut(s) 327, 462, 634, 881
Eco24I GRGCYC 2 cut(s) 197, 1183
Eco47I GGWCC 2 cut(s) 107, 503
Eco52I CGGCCG 1 cut(s) 235
Eco57I CTGAAG 1 cut(s) 1263
Eco88I CYCGRG 3 cut(s) 951, 996, 1176
EcoRII CCWGG 2 cut(s) 979, 1182
EcoT14I CCWWGG 4 cut(s) 327, 462, 634, 881
EcoT38I GRGCYC 2 cut(s) 197, 1183
ErhI CCWWGG 4 cut(s) 327, 462, 634, 881
Esp3I CGTCTC 1 cut(s) 71
FaeI CATG 5 cut(s) 140, 331, 503, 638, 691
FaqI GGGAC 3 cut(s) 751, 809, 1028
FatI CATG 5 cut(s) 136, 327, 499, 634, 687
FauI CCCGC 1 cut(s) 232
FauNDI CATATG 2 cut(s) 516, 1225
FblI GTMKAC 1 cut(s) 861
Fnu4HI GCNGC 7 cut(s) 72, 315, 318, 341, 588, 1152, 1173
FokI GGATG 4 cut(s) 202, 696, 1091, 1127
FriOI GRGCYC 2 cut(s) 197, 1183
Fsp4HI GCNGC 7 cut(s) 72, 315, 318, 341, 588, 1152, 1173
FspBI CTAG 2 cut(s) 801, 812
GlaI GCGC 2 cut(s) 255, 586
GluI GCNGC 7 cut(s) 72, 315, 318, 341, 588, 1152, 1173
HaeII RGCGCY 1 cut(s) 588
HaeIII GGCC 2 cut(s) 237, 995
HgaI GACGC 1 cut(s) 440
HhaI GCGC 2 cut(s) 256, 587
Hin1II CATG 5 cut(s) 140, 331, 503, 638, 691
Hin6I GCGC 2 cut(s) 254, 585
HinP1I GCGC 2 cut(s) 254, 585
HincII GTYRAC 1 cut(s) 855
HindII GTYRAC 1 cut(s) 855
HinfI GANTC 5 cut(s) 7, 539, 662, 797, 1190
HphI GGTGA 8 cut(s) 43, 202, 227, 291, 544, 650, 969, 1293
Hpy166II GTNNAC 4 cut(s) 134, 855, 862, 1321
Hpy188I TCNGA 2 cut(s) 382, 1282
Hpy188III TCNNGA 5 cut(s) 167, 367, 428, 770, 801
Hpy8I GTNNAC 4 cut(s) 134, 855, 862, 1321
Hpy99I CGWCG 5 cut(s) 61, 64, 298, 313, 1065
HpyAV CCTTC 7 cut(s) 120, 409, 523, 547, 667, 821, 1069
HpyCH4III ACNGT 4 cut(s) 98, 143, 859, 971
HpyCH4IV ACGT 2 cut(s) 752, 902
HpyCH4V TGCA 8 cut(s) 13, 343, 611, 709, 732, 746, 785, 845
HpyF10VI GCNNNNNNNGC 6 cut(s) 228, 408, 440, 706, 1178, 1202
HpyF3I CTNAG 3 cut(s) 891, 1071, 1230
HpySE526I ACGT 2 cut(s) 752, 902
Hsp92II CATG 5 cut(s) 140, 331, 503, 638, 691
HspAI GCGC 2 cut(s) 254, 585
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
KspI CCGCGG 1 cut(s) 591
Kzo9I GATC 4 cut(s) 64, 772, 897, 1107
LmnI GCTCC 3 cut(s) 88, 464, 697
Lsp1109I GCAGC 3 cut(s) 327, 1159, 1163
LweI GCATC 2 cut(s) 620, 718
MaeI CTAG 2 cut(s) 801, 812
MaeII ACGT 2 cut(s) 752, 902
MaeIII GTNAC 4 cut(s) 215, 297, 748, 946
MalI GATC 4 cut(s) 66, 774, 899, 1109
MboI GATC 4 cut(s) 64, 772, 897, 1107
MboII GAAGA 7 cut(s) 16, 237, 286, 479, 869, 1252, 1324
MflI RGATCY 2 cut(s) 772, 1107
MhlI GDGCHC 2 cut(s) 197, 1183
MluCI AATT 4 cut(s) 451, 641, 973, 1082
MlyI GAGTC 2 cut(s) 791, 1199
MmeI TCCRAC 1 cut(s) 135
MroNI GCCGGC 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 374
MseI TTAA 5 cut(s) 681, 702, 866, 1034, 1215
MslI CAYNNNNRTG 3 cut(s) 332, 606, 1224
MspA1I CMGCKG 1 cut(s) 590
MspCI CTTAAG 1 cut(s) 701
MspR9I CCNGG 7 cut(s) 239, 251, 354, 981, 997, 998, 1184
MvaI CCWGG 2 cut(s) 981, 1184
MvnI CGCG 1 cut(s) 590
MwoI GCNNNNNNNGC 6 cut(s) 228, 408, 440, 706, 1178, 1202
NaeI GCCGGC 1 cut(s) 229
NciI CCSGG 5 cut(s) 239, 251, 354, 997, 998
NcoI CCATGG 2 cut(s) 327, 634
NdeI CATATG 2 cut(s) 516, 1225
NdeII GATC 4 cut(s) 64, 772, 897, 1107
NgoMIV GCCGGC 1 cut(s) 227
NlaIII CATG 5 cut(s) 140, 331, 503, 638, 691
NlaIV GGNNCC 3 cut(s) 90, 351, 460
NmuCI GTSAC 3 cut(s) 215, 297, 946
OliI CACNNNNGTG 1 cut(s) 606
PaeR7I CTCGAG 2 cut(s) 951, 1176
PcsI WCGNNNNNNNCGW 1 cut(s) 317
PdiI GCCGGC 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 374
PfeI GAWTC 2 cut(s) 539, 662
PflFI GACNNNGTC 1 cut(s) 173
PinAI ACCGGT 2 cut(s) 212, 301
PkrI GCNGC 7 cut(s) 73, 316, 319, 342, 589, 1153, 1174
PleI GAGTC 2 cut(s) 791, 1198
PpsI GAGTC 2 cut(s) 791, 1198
Psp6I CCWGG 2 cut(s) 979, 1182
PspGI CCWGG 2 cut(s) 979, 1182
PspN4I GGNNCC 3 cut(s) 90, 351, 460
PspPI GGNCC 3 cut(s) 107, 503, 994
PspXI VCTCGAGB 2 cut(s) 951, 1176
PstI CTGCAG 1 cut(s) 748
PsuI RGATCY 2 cut(s) 772, 1107
PsyI GACNNNGTC 1 cut(s) 173
RsaI GTAC 1 cut(s) 1092
RsaNI GTAC 1 cut(s) 1091
RseI CAYNNNNRTG 3 cut(s) 332, 606, 1224
SacII CCGCGG 1 cut(s) 591
SaqAI TTAA 5 cut(s) 681, 702, 866, 1034, 1215
SatI GCNGC 7 cut(s) 72, 315, 318, 341, 588, 1152, 1173
Sau3AI GATC 4 cut(s) 64, 772, 897, 1107
Sau96I GGNCC 3 cut(s) 107, 503, 994
ScaI AGTACT 1 cut(s) 1092
SchI GAGTC 2 cut(s) 791, 1199
ScrFI CCNGG 7 cut(s) 239, 251, 354, 981, 997, 998, 1184
SduI GDGCHC 2 cut(s) 197, 1183
SfaNI GCATC 2 cut(s) 620, 718
SfcI CTRYAG 3 cut(s) 744, 858, 1098
Sfr274I CTCGAG 2 cut(s) 951, 1176
Sfr303I CCGCGG 1 cut(s) 591
SgrAI CRCCGGYG 2 cut(s) 212, 605
SgrBI CCGCGG 1 cut(s) 591
SinI GGWCC 2 cut(s) 107, 503
SlaI CTCGAG 2 cut(s) 951, 1176
SmaI CCCGGG 1 cut(s) 998
SmiMI CAYNNNNRTG 3 cut(s) 332, 606, 1224
SmlI CTYRAG 3 cut(s) 701, 951, 1176
SmoI CTYRAG 3 cut(s) 701, 951, 1176
SrfI GCCCGGGC 1 cut(s) 998
Sse9I AATT 4 cut(s) 451, 641, 973, 1082
SsiI CCGC 7 cut(s) 71, 74, 225, 314, 317, 588, 590
SspI AATATT 2 cut(s) 477, 790
SspMI CTAG 2 cut(s) 801, 812
StyD4I CCNGG 7 cut(s) 237, 249, 352, 979, 995, 996, 1182
StyI CCWWGG 4 cut(s) 327, 462, 634, 881
TaaI ACNGT 4 cut(s) 98, 143, 859, 971
TaiI ACGT 2 cut(s) 755, 905
TaqI TCGA 4 cut(s) 916, 952, 1177, 1201
TasI AATT 4 cut(s) 451, 641, 973, 1082
TatI WGTACW 1 cut(s) 1090
TauI GCSGC 4 cut(s) 74, 317, 320, 590
TfiI GAWTC 2 cut(s) 539, 662
Tru1I TTAA 5 cut(s) 681, 702, 866, 1034, 1215
Tru9I TTAA 5 cut(s) 681, 702, 866, 1034, 1215
TscAI CASTG 2 cut(s) 739, 1075
TseFI GTSAC 3 cut(s) 215, 297, 946
TseI GCWGC 3 cut(s) 340, 1151, 1172
Tsp45I GTSAC 3 cut(s) 215, 297, 946
TspDTI ATGAA 3 cut(s) 17, 840, 1095
TspGWI ACGGA 2 cut(s) 77, 101
TspMI CCCGGG 1 cut(s) 996
TspRI CASTG 2 cut(s) 739, 1075
Tth111I GACNNNGTC 1 cut(s) 173
Vha464I CTTAAG 1 cut(s) 701
VpaK11BI GGWCC 2 cut(s) 107, 503
XapI RAATTY 3 cut(s) 451, 641, 1082
XbaI TCTAGA 1 cut(s) 800
XhoI CTCGAG 2 cut(s) 951, 1176
XmaI CCCGGG 1 cut(s) 996
XmiI GTMKAC 1 cut(s) 861
XmnI GAANNNNTTC 1 cut(s) 374
XspI CTAG 2 cut(s) 801, 812
ZrmI AGTACT 1 cut(s) 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.