Rroxscaffold_5G00355070

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011554
Physical Location & Seq
Reverse (-)
33646983 .. 33652618
5636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00355070.1

Sequence Viewer

Length: 1008 bp
ATGGAGATGTGGCTGCACAGGATTCCGGGGAGGTTGTTCCTGAATGGCTTCTCTGATGTGGCTTCCCTGTTCAGCAAGCAAGGCAAGAAGGGTGTCAATCAGGACGCTATGATTGCTTGGGAGAATTTCGGCTCGAAGGAAGATACAATATTTTGTGGTGTTTTTGATGGGCATGGTCCTTGTGGTCATATGGTGGCGAAGAAGGTGAGGGATTCTCTACCTTTGAAGGTCAGCTCACAATGGGTGTTGAACACCAGCGCCGCGGATACTAACCACAACCACGCCGGTGCGTCTGTGGAGAACAAGGACAGCCATGGTGAATTTTTCACCACATTGAAAGATTCGTTTTTGAAGGCTTTTAAGGTCATGGACAAGGAGCTTAAGTTGCATCCTCGTATTGATTGCTATTGCAGTGGGACAACTGCAGTTACGTTGGTCAAGCAGGGTCAGGATCTTGTTATTGCAAATATTGGGGACTCTAGAGCTGTGCTAGGCACAAGAGATGAAGGGGGTTCTCTTGTTGCAGTTCAGTTGACCGTAGACTTAAAACCAAATCTTCCAAGGGAAGCCGAGAGGATTACGTTATGTAAAGGTCGAGTATTTGCTCTCCACAACGAGCCTGATGTCACTCGAGTTTGGCTGCCCAACAGTAATTCACCTGGGCTTGCTATGGCCCGGGCTTTTGGAGATTTCTGCCTAAAGGATTATGGTTTAATCTCTGTCCCTGATGTTTCTTATCGTCGCCTCACTGAGAAGGATGAATTTGTAGTACTGGCTACAGATGGGATCTGGGATGTTCTCTCAAACAAAGAAGTTGTGGATATAGTGGCAGCAACCCCACGACCCTCTGCTGCTCGAGCCCTGGTGGAGTCAGCCAATCGAGCTTGGAGATTTAAACACCCATATGCCAAGGTTGATGATTGTGCCGTTGTTTGCCTCTTCCTCACTTCCGGTGCTTCAGACAATACTTCCCTTTCCTCACCAGAGGAGAAGATAAACTCAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

335

Amino Acids

36.74

Weight (kDa)

6.51

Isoelectric Point (pI)

20.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 27 - 279 3.9e-42 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 540
AccII CGCG 1 cut(s) 263
AciI CCGC 2 cut(s) 261, 263
AclWI GGATC 2 cut(s) 459, 794
AcsI RAATTY 3 cut(s) 124, 320, 761
AcuI CTGAAG 1 cut(s) 942
AfaI GTAC 1 cut(s) 771
AflII CTTAAG 1 cut(s) 380
AgsI TTSAA 4 cut(s) 226, 250, 337, 352
AjnI CCWGG 2 cut(s) 658, 861
AleI CACNNNNGTG 1 cut(s) 285
AluBI AGCT 4 cut(s) 234, 379, 485, 884
AluI AGCT 4 cut(s) 234, 379, 485, 884
AlwI GGATC 2 cut(s) 459, 794
Ama87I CYCGRG 3 cut(s) 630, 675, 855
AoxI GGCC 1 cut(s) 672
ApeKI GCWGC 4 cut(s) 13, 640, 830, 851
ApoI RAATTY 3 cut(s) 124, 320, 761
Asp700I GAANNNNTTC 1 cut(s) 47
AspLEI GCGC 1 cut(s) 260
AspS9I GGNCC 2 cut(s) 176, 673
AsuC2I CCSGG 3 cut(s) 27, 676, 677
AsuHPI GGTGA 5 cut(s) 217, 319, 329, 648, 972
AvaI CYCGRG 3 cut(s) 630, 675, 855
AvaII GGWCC 1 cut(s) 176
BanII GRGCYC 1 cut(s) 862
BbvI GCAGC 3 cut(s) 627, 838, 842
BccI CCATC 2 cut(s) 161, 776
BceAI ACGGC 1 cut(s) 911
BciT130I CCWGG 2 cut(s) 660, 863
BciVI GTATCC 1 cut(s) 259
BcnI CCSGG 3 cut(s) 27, 676, 677
BfaI CTAG 2 cut(s) 480, 491
BfmI CTRYAG 2 cut(s) 423, 777
BfoI RGCGCY 1 cut(s) 261
BfrI CTTAAG 1 cut(s) 380
BfuI GTATCC 1 cut(s) 259
BisI GCNGC 5 cut(s) 14, 261, 641, 831, 852
BlsI GCNGC 5 cut(s) 15, 262, 642, 832, 853
BmcAI AGTACT 1 cut(s) 771
Bme1390I CCNGG 5 cut(s) 27, 660, 676, 677, 863
Bme18I GGWCC 1 cut(s) 176
BmeT110I CYCGRG 3 cut(s) 630, 675, 855
BmgT120I GGNCC 2 cut(s) 176, 673
BmrFI CCNGG 5 cut(s) 27, 660, 676, 677, 863
BmsI GCATC 1 cut(s) 397
BplI GAGNNNNNCTC 2 cut(s) 199, 231
BpuMI CCSGG 3 cut(s) 27, 676, 677
BsaJI CCNNGG 8 cut(s) 26, 261, 313, 560, 659, 675, 861, 909
BsaWI WCCGGW 1 cut(s) 950
BsaXI ACNNNNNCTCC 2 cut(s) 368, 398
Bse118I RCCGGY 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 777
BseBI CCWGG 2 cut(s) 660, 863
BseDI CCNNGG 8 cut(s) 26, 261, 313, 560, 659, 675, 861, 909
BseGI GGATG 3 cut(s) 388, 763, 799
BseMII CTCAG 1 cut(s) 741
BseNI ACTGG 1 cut(s) 777
BseRI GAGGAG 1 cut(s) 1001
BseXI GCAGC 3 cut(s) 627, 838, 842
Bsh1236I CGCG 1 cut(s) 263
BshFI GGCC 1 cut(s) 674
BsiHKCI CYCGRG 3 cut(s) 630, 675, 855
BsiSI CCGG 4 cut(s) 26, 285, 676, 951
BslFI GGGAC 3 cut(s) 430, 488, 707
BsmFI GGGAC 3 cut(s) 430, 488, 707
BsnI GGCC 1 cut(s) 674
BsoBI CYCGRG 3 cut(s) 630, 675, 855
Bsp1286I GDGCHC 1 cut(s) 862
Bsp143I GATC 2 cut(s) 451, 786
Bsp19I CCATGG 1 cut(s) 313
BspACI CCGC 2 cut(s) 261, 263
BspANI GGCC 1 cut(s) 674
BspCNI CTCAG 1 cut(s) 742
BspFNI CGCG 1 cut(s) 263
BspMAI CTGCAG 1 cut(s) 427
BspPI GGATC 2 cut(s) 459, 794
BspTI CTTAAG 1 cut(s) 380
BsrFI RCCGGY 1 cut(s) 284
BsrI ACTGG 1 cut(s) 777
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 8 cut(s) 26, 261, 313, 560, 659, 675, 861, 909
BssMI GATC 2 cut(s) 451, 786
BssT1I CCWWGG 3 cut(s) 313, 560, 909
Bst2UI CCWGG 2 cut(s) 660, 863
Bst4CI ACNGT 2 cut(s) 538, 650
Bst6I CTCTTC 1 cut(s) 944
BstAFI CTTAAG 1 cut(s) 380
BstC8I GCNNGC 2 cut(s) 77, 666
BstDEI CTNAG 1 cut(s) 750
BstDSI CCRYGG 2 cut(s) 261, 313
BstF5I GGATG 3 cut(s) 388, 763, 799
BstFNI CGCG 1 cut(s) 263
BstH2I RGCGCY 1 cut(s) 261
BstHHI GCGC 1 cut(s) 260
BstKTI GATC 2 cut(s) 454, 789
BstMBI GATC 2 cut(s) 451, 786
BstMWI GCNNNNNNNGC 5 cut(s) 81, 113, 385, 857, 881
BstNI CCWGG 2 cut(s) 660, 863
BstSCI CCNGG 5 cut(s) 25, 658, 674, 675, 861
BstSFI CTRYAG 2 cut(s) 423, 777
BstUI CGCG 1 cut(s) 263
BstV1I GCAGC 3 cut(s) 627, 838, 842
BstX2I RGATCY 2 cut(s) 451, 786
BstYI RGATCY 2 cut(s) 451, 786
BsuI GTATCC 1 cut(s) 259
BsuRI GGCC 1 cut(s) 674
BtgI CCRYGG 2 cut(s) 261, 313
BtsCI GGATG 3 cut(s) 388, 763, 799
BtsI GCAGTG 1 cut(s) 418
BtsIMutI CAGTG 2 cut(s) 418, 747
Cac8I GCNNGC 2 cut(s) 77, 666
CfoI GCGC 1 cut(s) 260
Cfr10I RCCGGY 1 cut(s) 284
Cfr13I GGNCC 2 cut(s) 176, 673
Cfr42I CCGCGG 1 cut(s) 264
Cfr9I CCCGGG 1 cut(s) 675
CseI GACGC 2 cut(s) 113, 279
Csp6I GTAC 1 cut(s) 770
CviAII CATG 3 cut(s) 173, 314, 367
CviQI GTAC 1 cut(s) 770
DdeI CTNAG 1 cut(s) 750
DpnI GATC 2 cut(s) 453, 788
DpnII GATC 2 cut(s) 451, 786
DraI TTTAAA 1 cut(s) 895
Eam1104I CTCTTC 1 cut(s) 944
EarI CTCTTC 1 cut(s) 944
Eco130I CCWWGG 3 cut(s) 313, 560, 909
Eco24I GRGCYC 1 cut(s) 862
Eco47I GGWCC 1 cut(s) 176
Eco57I CTGAAG 1 cut(s) 942
Eco88I CYCGRG 3 cut(s) 630, 675, 855
EcoRII CCWGG 2 cut(s) 658, 861
EcoT14I CCWWGG 3 cut(s) 313, 560, 909
EcoT38I GRGCYC 1 cut(s) 862
ErhI CCWWGG 3 cut(s) 313, 560, 909
FaeI CATG 3 cut(s) 176, 317, 370
FaqI GGGAC 3 cut(s) 430, 488, 707
FatI CATG 3 cut(s) 172, 313, 366
FauNDI CATATG 2 cut(s) 189, 904
FblI GTMKAC 1 cut(s) 540
Fnu4HI GCNGC 5 cut(s) 14, 261, 641, 831, 852
FokI GGATG 3 cut(s) 375, 770, 806
FriOI GRGCYC 1 cut(s) 862
Fsp4HI GCNGC 5 cut(s) 14, 261, 641, 831, 852
FspBI CTAG 2 cut(s) 480, 491
GlaI GCGC 1 cut(s) 259
GluI GCNGC 5 cut(s) 14, 261, 641, 831, 852
HaeII RGCGCY 1 cut(s) 261
HaeIII GGCC 1 cut(s) 674
HapII CCGG 4 cut(s) 26, 285, 676, 951
HgaI GACGC 2 cut(s) 113, 279
HhaI GCGC 1 cut(s) 260
Hin1II CATG 3 cut(s) 176, 317, 370
Hin6I GCGC 1 cut(s) 258
HinP1I GCGC 1 cut(s) 258
HincII GTYRAC 1 cut(s) 534
HindII GTYRAC 1 cut(s) 534
HinfI GANTC 5 cut(s) 22, 212, 341, 476, 869
HpaII CCGG 4 cut(s) 26, 285, 676, 951
HphI GGTGA 5 cut(s) 217, 319, 329, 648, 972
Hpy166II GTNNAC 2 cut(s) 534, 541
Hpy188I TCNGA 2 cut(s) 55, 961
Hpy188III TCNNGA 4 cut(s) 40, 101, 449, 480
Hpy8I GTNNAC 2 cut(s) 534, 541
Hpy99I CGWCG 1 cut(s) 744
HpyAV CCTTC 7 cut(s) 82, 130, 196, 220, 346, 500, 748
HpyCH4III ACNGT 2 cut(s) 538, 650
HpyCH4IV ACGT 2 cut(s) 431, 581
HpyCH4V TGCA 6 cut(s) 16, 388, 411, 425, 464, 524
HpyF10VI GCNNNNNNNGC 5 cut(s) 81, 113, 385, 857, 881
HpyF3I CTNAG 1 cut(s) 750
HpySE526I ACGT 2 cut(s) 431, 581
Hsp92II CATG 3 cut(s) 176, 317, 370
HspAI GCGC 1 cut(s) 258
KspI CCGCGG 1 cut(s) 264
Kzo9I GATC 2 cut(s) 451, 786
LmnI GCTCC 1 cut(s) 376
Lsp1109I GCAGC 3 cut(s) 627, 838, 842
LweI GCATC 1 cut(s) 397
MaeI CTAG 2 cut(s) 480, 491
MaeII ACGT 2 cut(s) 431, 581
MaeIII GTNAC 2 cut(s) 427, 625
MalI GATC 2 cut(s) 453, 788
MboI GATC 2 cut(s) 451, 786
MboII GAAGA 5 cut(s) 152, 211, 548, 931, 1003
MflI RGATCY 2 cut(s) 451, 786
MhlI GDGCHC 1 cut(s) 862
MluCI AATT 4 cut(s) 124, 320, 652, 761
MlyI GAGTC 2 cut(s) 470, 878
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 5 cut(s) 360, 381, 545, 713, 894
MslI CAYNNNNRTG 2 cut(s) 285, 903
MspA1I CMGCKG 1 cut(s) 263
MspCI CTTAAG 1 cut(s) 380
MspI CCGG 4 cut(s) 26, 285, 676, 951
MspR9I CCNGG 5 cut(s) 27, 660, 676, 677, 863
MvaI CCWGG 2 cut(s) 660, 863
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 5 cut(s) 81, 113, 385, 857, 881
NciI CCSGG 3 cut(s) 27, 676, 677
NcoI CCATGG 1 cut(s) 313
NdeI CATATG 2 cut(s) 189, 904
NdeII GATC 2 cut(s) 451, 786
NlaIII CATG 3 cut(s) 176, 317, 370
NmeAIII GCCGAG 1 cut(s) 595
NmuCI GTSAC 1 cut(s) 625
OliI CACNNNNGTG 1 cut(s) 285
PaeR7I CTCGAG 2 cut(s) 630, 855
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 3 cut(s) 22, 212, 341
PkrI GCNGC 5 cut(s) 15, 262, 642, 832, 853
PleI GAGTC 2 cut(s) 470, 877
PpsI GAGTC 2 cut(s) 470, 877
Psp6I CCWGG 2 cut(s) 658, 861
PspGI CCWGG 2 cut(s) 658, 861
PspPI GGNCC 2 cut(s) 176, 673
PspXI VCTCGAGB 2 cut(s) 630, 855
PstI CTGCAG 1 cut(s) 427
PsuI RGATCY 2 cut(s) 451, 786
RsaI GTAC 1 cut(s) 771
RsaNI GTAC 1 cut(s) 770
RseI CAYNNNNRTG 2 cut(s) 285, 903
SacII CCGCGG 1 cut(s) 264
SaqAI TTAA 5 cut(s) 360, 381, 545, 713, 894
SatI GCNGC 5 cut(s) 14, 261, 641, 831, 852
Sau3AI GATC 2 cut(s) 451, 786
Sau96I GGNCC 2 cut(s) 176, 673
ScaI AGTACT 1 cut(s) 771
SchI GAGTC 2 cut(s) 470, 878
ScrFI CCNGG 5 cut(s) 27, 660, 676, 677, 863
SduI GDGCHC 1 cut(s) 862
SfaNI GCATC 1 cut(s) 397
SfcI CTRYAG 2 cut(s) 423, 777
Sfr274I CTCGAG 2 cut(s) 630, 855
Sfr303I CCGCGG 1 cut(s) 264
SgrAI CRCCGGYG 1 cut(s) 284
SgrBI CCGCGG 1 cut(s) 264
SinI GGWCC 1 cut(s) 176
SlaI CTCGAG 2 cut(s) 630, 855
SmaI CCCGGG 1 cut(s) 677
SmiMI CAYNNNNRTG 2 cut(s) 285, 903
SmlI CTYRAG 3 cut(s) 380, 630, 855
SmoI CTYRAG 3 cut(s) 380, 630, 855
SrfI GCCCGGGC 1 cut(s) 677
Sse9I AATT 4 cut(s) 124, 320, 652, 761
SsiI CCGC 2 cut(s) 261, 263
SspI AATATT 2 cut(s) 150, 469
SspMI CTAG 2 cut(s) 480, 491
StyD4I CCNGG 5 cut(s) 25, 658, 674, 675, 861
StyI CCWWGG 3 cut(s) 313, 560, 909
TaaI ACNGT 2 cut(s) 538, 650
TaiI ACGT 2 cut(s) 434, 584
TaqI TCGA 5 cut(s) 134, 595, 631, 856, 880
TasI AATT 4 cut(s) 124, 320, 652, 761
TatI WGTACW 1 cut(s) 769
TauI GCSGC 1 cut(s) 263
TfiI GAWTC 3 cut(s) 22, 212, 341
Tru1I TTAA 5 cut(s) 360, 381, 545, 713, 894
Tru9I TTAA 5 cut(s) 360, 381, 545, 713, 894
TscAI CASTG 2 cut(s) 418, 754
TseFI GTSAC 1 cut(s) 625
TseI GCWGC 4 cut(s) 13, 640, 830, 851
Tsp45I GTSAC 1 cut(s) 625
TspDTI ATGAA 2 cut(s) 519, 774
TspMI CCCGGG 1 cut(s) 675
TspRI CASTG 2 cut(s) 418, 754
Vha464I CTTAAG 1 cut(s) 380
VpaK11BI GGWCC 1 cut(s) 176
XapI RAATTY 3 cut(s) 124, 320, 761
XbaI TCTAGA 1 cut(s) 479
XhoI CTCGAG 2 cut(s) 630, 855
XmaI CCCGGG 1 cut(s) 675
XmiI GTMKAC 1 cut(s) 540
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 2 cut(s) 480, 491
ZrmI AGTACT 1 cut(s) 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.