Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0011554

Physical Location & Seq

Genomic Coordinates Reverse (-)

15950093 .. 15950488

Gene Structure 396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0102000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAAGTTTTATGGGACTTACTTGTTTGTCTTATTCAGTCTTCTCCTACTATCCTCCTATGTTAATGGTGACTATGTTTTTTTTGATAGTTCAGCAAATTATGATGATGTCTTAAGGCTTCTGCCTAAGGGTCCTAATCCTCGAGAGTCTCCACCGTTGGATGTCTTCAGGCGTGTGCCTACGGGTCCCAACCCTCGGCAGTCACCACCGGTGCAATATTTCGAGCATGAGGCCTTTGATAGTTCATCCAACCATGATGATGTCTTAAGGCTTGTCCCCAAAGGTCCGAATCCTCAGCAACCTCCACCACTGAATGTCTTAACACGTGTGCCGCCTTCAGGCCCGAATCCTCGAGAGTCTCCACCGTTGGATGTCTTCTGTAGATACCTCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

131

Amino Acids

14.89

Weight (kDa)

6.05

Isoelectric Point (pI)

63.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011554)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12270
malus_domestica	MD04G1028000.v1.1
prunus_persica	Prupe.1G177400_v2.0.a1 Prupe.1G177400_v2.0.a1
pyrus_communis	pycom04g02460
rosa_chinensis	RchiOBHm_Chr4g0410301
rosa_laevigata	RLG00000008439
rosa_multiflora	Rmu_co8258587.1_g000001 Rmu_sc0002111.1_g000034 Rmu_sc0006329.1_g000001
rosa_roxburghii	Rroxscaffold_5G00355070
rosa_rugosa	Rorug04G0102000 Rorug04G0102100 Rorug04G0102200 Rorug04G0102200
rosa_samantha	Rh4AG159900 Rh4BG158800 Rh4CG172000 Rh4DG154600
rosa_wichuraiana	Rw4G013310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	332
AcuI	CTGAAG	2 cut(s)	151, 321
AcvI	CACGTG	1 cut(s)	326
AfiI	CCNNNNNNNGG	2 cut(s)	195, 338
AflII	CTTAAG	2 cut(s)	112, 265
AflIII	ACRYGT	2 cut(s)	323, 325
AgeI	ACCGGT	1 cut(s)	208
Alw26I	GTCTC	2 cut(s)	153, 363
Ama87I	CYCGRG	2 cut(s)	141, 351
AoxI	GGCC	2 cut(s)	231, 340
AsiGI	ACCGGT	1 cut(s)	208
AspS9I	GGNCC	4 cut(s)	131, 185, 284, 341
AsuHPI	GGTGA	2 cut(s)	80, 195
AvaI	CYCGRG	2 cut(s)	141, 351
AvaII	GGWCC	3 cut(s)	131, 185, 284
AxyI	CCTNAGG	1 cut(s)	126
BbrPI	CACGTG	1 cut(s)	326
BbsI	GAAGAC	3 cut(s)	32, 157, 367
BbvCI	CCTCAGC	1 cut(s)	294
BcoDI	GTCTC	2 cut(s)	153, 363
BfaI	CTAG	1 cut(s)	394
BfmI	CTRYAG	1 cut(s)	379
BfrI	CTTAAG	2 cut(s)	112, 265
BisI	GCNGC	1 cut(s)	332
BlsI	GCNGC	1 cut(s)	333
Bme18I	GGWCC	3 cut(s)	131, 185, 284
BmeT110I	CYCGRG	2 cut(s)	141, 351
BmgT120I	GGNCC	4 cut(s)	131, 185, 284, 341
BmiI	GGNNCC	3 cut(s)	132, 186, 187
BpiI	GAAGAC	3 cut(s)	32, 157, 367
Bpu10I	CCTNAGC	1 cut(s)	294
BsaAI	YACGTR	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	194
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 338
Bse118I	RCCGGY	1 cut(s)	208
Bse21I	CCTNAGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	194
BseGI	GGATG	3 cut(s)	166, 245, 376
BseLI	CCNNNNNNNGG	2 cut(s)	195, 338
BseMII	CTCAG	1 cut(s)	308
BshFI	GGCC	2 cut(s)	233, 342
BshTI	ACCGGT	1 cut(s)	208
BsiHKCI	CYCGRG	2 cut(s)	141, 351
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	3 cut(s)	28, 171, 260
BslI	CCNNNNNNNGG	2 cut(s)	195, 338
BsmAI	GTCTC	2 cut(s)	153, 363
BsmFI	GGGAC	3 cut(s)	28, 171, 260
BsnI	GGCC	2 cut(s)	233, 342
BsoBI	CYCGRG	2 cut(s)	141, 351
BspACI	CCGC	1 cut(s)	332
BspANI	GGCC	2 cut(s)	233, 342
BspCNI	CTCAG	1 cut(s)	307
BspLI	GGNNCC	3 cut(s)	132, 186, 187
BspTI	CTTAAG	2 cut(s)	112, 265
BsrFI	RCCGGY	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	194
Bst4CI	ACNGT	2 cut(s)	156, 366
BstAFI	CTTAAG	2 cut(s)	112, 265
BstBAI	YACGTR	1 cut(s)	326
BstDEI	CTNAG	2 cut(s)	126, 294
BstF5I	GGATG	3 cut(s)	166, 245, 376
BstMAI	GTCTC	2 cut(s)	153, 363
BstSFI	CTRYAG	1 cut(s)	379
BstV2I	GAAGAC	3 cut(s)	32, 157, 367
Bsu36I	CCTNAGG	1 cut(s)	126
BsuRI	GGCC	2 cut(s)	233, 342
BtsCI	GGATG	3 cut(s)	166, 245, 376
BtsIMutI	CAGTG	1 cut(s)	308
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	4 cut(s)	131, 185, 284, 341
CspAI	ACCGGT	1 cut(s)	208
CviAII	CATG	2 cut(s)	227, 254
CviJI	RGCY	4 cut(s)	118, 233, 271, 342
CviKI_1	RGCY	4 cut(s)	118, 233, 271, 342
DdeI	CTNAG	2 cut(s)	126, 294
Eco147I	AGGCCT	1 cut(s)	233
Eco47I	GGWCC	3 cut(s)	131, 185, 284
Eco57I	CTGAAG	2 cut(s)	151, 321
Eco72I	CACGTG	1 cut(s)	326
Eco81I	CCTNAGG	1 cut(s)	126
Eco88I	CYCGRG	2 cut(s)	141, 351
EcoO109I	RGGNCCY	2 cut(s)	131, 185
FaeI	CATG	2 cut(s)	230, 257
FaiI	YATR	6 cut(s)	12, 60, 75, 102, 228, 255
FaqI	GGGAC	3 cut(s)	28, 171, 260
FatI	CATG	2 cut(s)	226, 253
Fnu4HI	GCNGC	1 cut(s)	332
FokI	GGATG	3 cut(s)	173, 232, 383
Fsp4HI	GCNGC	1 cut(s)	332
FspBI	CTAG	1 cut(s)	394
GluI	GCNGC	1 cut(s)	332
HaeIII	GGCC	2 cut(s)	233, 342
HapII	CCGG	1 cut(s)	209
Hin1II	CATG	2 cut(s)	230, 257
HinfI	GANTC	4 cut(s)	146, 289, 346, 356
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	2 cut(s)	80, 195
Hpy188I	TCNGA	1 cut(s)	288
Hpy188III	TCNNGA	2 cut(s)	143, 353
HpyAV	CCTTC	1 cut(s)	345
HpyCH4III	ACNGT	2 cut(s)	156, 366
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	1 cut(s)	214
HpyF3I	CTNAG	2 cut(s)	126, 294
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	2 cut(s)	230, 257
KflI	GGGWCCC	1 cut(s)	185
LpnPI	CCDG	3 cut(s)	154, 222, 324
MaeI	CTAG	1 cut(s)	394
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	2 cut(s)	68, 201
MboII	GAAGA	3 cut(s)	32, 157, 367
MluCI	AATT	1 cut(s)	97
MlyI	GAGTC	2 cut(s)	155, 365
MmeI	TCCRAC	3 cut(s)	138, 273, 348
MnlI	CCTC	7 cut(s)	64, 150, 204, 223, 303, 312, 360
MseI	TTAA	4 cut(s)	63, 113, 266, 320
MslI	CAYNNNNRTG	1 cut(s)	258
MspCI	CTTAAG	2 cut(s)	112, 265
MspI	CCGG	1 cut(s)	209
NlaIII	CATG	2 cut(s)	230, 257
NlaIV	GGNNCC	3 cut(s)	132, 186, 187
NmeAIII	GCCGAG	1 cut(s)	175
NmuCI	GTSAC	2 cut(s)	68, 201
PaeR7I	CTCGAG	2 cut(s)	141, 351
PceI	AGGCCT	1 cut(s)	233
PfeI	GAWTC	2 cut(s)	289, 346
PinAI	ACCGGT	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	333
PleI	GAGTC	2 cut(s)	154, 364
PmaCI	CACGTG	1 cut(s)	326
PmlI	CACGTG	1 cut(s)	326
PpsI	GAGTC	2 cut(s)	154, 364
Ppu21I	YACGTR	1 cut(s)	326
PpuMI	RGGWCCY	2 cut(s)	131, 185
Psp5II	RGGWCCY	2 cut(s)	131, 185
PspCI	CACGTG	1 cut(s)	326
PspN4I	GGNNCC	3 cut(s)	132, 186, 187
PspPI	GGNCC	4 cut(s)	131, 185, 284, 341
PspPPI	RGGWCCY	2 cut(s)	131, 185
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	4 cut(s)	63, 113, 266, 320
SatI	GCNGC	1 cut(s)	332
Sau96I	GGNCC	4 cut(s)	131, 185, 284, 341
SchI	GAGTC	2 cut(s)	155, 365
SetI	ASST	4 cut(s)	286, 304, 328, 390
SfcI	CTRYAG	1 cut(s)	379
Sfr274I	CTCGAG	2 cut(s)	141, 351
SgrAI	CRCCGGYG	1 cut(s)	208
SinI	GGWCC	3 cut(s)	131, 185, 284
SlaI	CTCGAG	2 cut(s)	141, 351
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	4 cut(s)	112, 141, 265, 351
SmoI	CTYRAG	4 cut(s)	112, 141, 265, 351
Sse9I	AATT	1 cut(s)	97
SseBI	AGGCCT	1 cut(s)	233
SsiI	CCGC	1 cut(s)	332
SspI	AATATT	1 cut(s)	218
SspMI	CTAG	1 cut(s)	394
StuI	AGGCCT	1 cut(s)	233
TaaI	ACNGT	2 cut(s)	156, 366
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	3 cut(s)	142, 222, 352
TasI	AATT	1 cut(s)	97
TauI	GCSGC	1 cut(s)	334
TfiI	GAWTC	2 cut(s)	289, 346
Tru1I	TTAA	4 cut(s)	63, 113, 266, 320
Tru9I	TTAA	4 cut(s)	63, 113, 266, 320
TscAI	CASTG	1 cut(s)	315
TseFI	GTSAC	2 cut(s)	68, 201
Tsp45I	GTSAC	2 cut(s)	68, 201
TspDTI	ATGAA	2 cut(s)	17, 234
TspRI	CASTG	1 cut(s)	315
Vha464I	CTTAAG	2 cut(s)	112, 265
VpaK11BI	GGWCC	3 cut(s)	131, 185, 284
XhoI	CTCGAG	2 cut(s)	141, 351
XspI	CTAG	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.