Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8258587.1

Orthogroup ID

OG0011554

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 804

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8258587.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 548 bp

ggagggtgagactttgtgattggtccaaaacgacgacggatcaggcggcggagacgaggacggagccggactgtatggtaggtccggtgggggaggcaagaaggggtggatatgactgtgtggttgggttggactgttttctggacatcgtcagggctttagggatgggctcgtgtctctccatcaccggtgacaactccgccggctacggccgggtgtcttccccggcgcagggcaacaagaggaggaagaggttgaccggcaactcgtcgtcaccggtttcgtcggcggcggcgagttccatggagatgtggctgcacaggattccggggaggttgttcctgaatggcttctctgatgtggcttccctgttcagcaagcaaggcaagaagggtgtcaatcaggacgctatgattgcttgggagaatttcggctccaaggaagatacaatattttgtggtgtttttgatgggcatggtccttgtggtcatatggtggcgaagaaggtgagggattctctacctttgaaggtcagctcacaatgggtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

182

Amino Acids

19.6

Weight (kDa)

8.91

Isoelectric Point (pI)

39.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011554)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12270
malus_domestica	MD04G1028000.v1.1
prunus_persica	Prupe.1G177400_v2.0.a1 Prupe.1G177400_v2.0.a1
pyrus_communis	pycom04g02460
rosa_chinensis	RchiOBHm_Chr4g0410301
rosa_laevigata	RLG00000008439
rosa_multiflora	Rmu_co8258587.1_g000001 Rmu_sc0002111.1_g000034 Rmu_sc0006329.1_g000001
rosa_roxburghii	Rroxscaffold_5G00355070
rosa_rugosa	Rorug04G0102000 Rorug04G0102100 Rorug04G0102200 Rorug04G0102200
rosa_samantha	Rh4AG159900 Rh4BG158800 Rh4CG172000 Rh4DG154600
rosa_wichuraiana	Rw4G013310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	46, 49, 200, 289, 292
AclWI	GGATC	1 cut(s)	47
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	426
AfiI	CCNNNNNNNGG	2 cut(s)	231, 232
AgeI	ACCGGT	2 cut(s)	187, 276
AgsI	TTSAA	1 cut(s)	528
AluBI	AGCT	1 cut(s)	536
AluI	AGCT	1 cut(s)	536
Alw26I	GTCTC	3 cut(s)	3, 46, 181
AlwI	GGATC	1 cut(s)	47
AoxI	GGCC	1 cut(s)	210
ApeKI	GCWGC	1 cut(s)	315
ApoI	RAATTY	1 cut(s)	426
AsiGI	ACCGGT	2 cut(s)	187, 276
Asp700I	GAANNNNTTC	1 cut(s)	349
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	3 cut(s)	23, 82, 478
AsuC2I	CCSGG	3 cut(s)	214, 226, 329
AsuHPI	GGTGA	5 cut(s)	18, 177, 202, 266, 519
AvaII	GGWCC	3 cut(s)	23, 82, 478
BanII	GRGCYC	1 cut(s)	172
BauI	CACGAG	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	212
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	3 cut(s)	159, 190, 463
BceAI	ACGGC	1 cut(s)	225
BcnI	CCSGG	3 cut(s)	214, 226, 329
BcoDI	GTCTC	3 cut(s)	3, 46, 181
BisI	GCNGC	4 cut(s)	47, 290, 293, 316
BlsI	GCNGC	4 cut(s)	48, 291, 294, 317
Bme1390I	CCNGG	3 cut(s)	214, 226, 329
Bme18I	GGWCC	3 cut(s)	23, 82, 478
BmgT120I	GGNCC	3 cut(s)	23, 82, 478
BmiI	GGNNCC	2 cut(s)	65, 435
BmrFI	CCNGG	3 cut(s)	214, 226, 329
BpiI	GAAGAC	1 cut(s)	212
BplI	GAGNNNNNCTC	2 cut(s)	501, 533
BpuMI	CCSGG	3 cut(s)	214, 226, 329
BsaJI	CCNNGG	4 cut(s)	224, 302, 328, 437
BsaWI	WCCGGW	3 cut(s)	84, 187, 276
Bsc4I	CCNNNNNNNGG	2 cut(s)	231, 232
Bse118I	RCCGGY	4 cut(s)	187, 202, 259, 276
BseDI	CCNNGG	4 cut(s)	224, 302, 328, 437
BseGI	GGATG	1 cut(s)	170
BseLI	CCNNNNNNNGG	2 cut(s)	231, 232
BseRI	GAGGAG	1 cut(s)	258
BseX3I	CGGCCG	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	302
BsgI	GTGCAG	1 cut(s)	301
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	1 cut(s)	212
BshTI	ACCGGT	2 cut(s)	187, 276
BsiEI	CGRYCG	1 cut(s)	213
BsiSI	CCGG	9 cut(s)	67, 85, 188, 203, 213, 226, 260, 277, 328
BslI	CCNNNNNNNGG	2 cut(s)	231, 232
BsmAI	GTCTC	3 cut(s)	3, 46, 181
BsmBI	CGTCTC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	1 cut(s)	39
Bsp19I	CCATGG	1 cut(s)	302
BspACI	CCGC	5 cut(s)	46, 49, 200, 289, 292
BspANI	GGCC	1 cut(s)	212
BspLI	GGNNCC	2 cut(s)	65, 435
BspPI	GGATC	1 cut(s)	47
BsrFI	RCCGGY	4 cut(s)	187, 202, 259, 276
BssAI	RCCGGY	4 cut(s)	187, 202, 259, 276
BssECI	CCNNGG	4 cut(s)	224, 302, 328, 437
BssMI	GATC	1 cut(s)	39
BssSI	CACGAG	1 cut(s)	171
BssT1I	CCWWGG	2 cut(s)	302, 437
Bst2BI	CACGAG	1 cut(s)	171
Bst4CI	ACNGT	3 cut(s)	73, 118, 136
Bst6I	CTCTTC	1 cut(s)	244
BstC8I	GCNNGC	2 cut(s)	204, 379
BstDSI	CCRYGG	1 cut(s)	302
BstF5I	GGATG	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	1 cut(s)	42
BstMAI	GTCTC	3 cut(s)	3, 46, 181
BstMBI	GATC	1 cut(s)	39
BstMCI	CGRYCG	1 cut(s)	213
BstMWI	GCNNNNNNNGC	2 cut(s)	383, 415
BstSCI	CCNGG	3 cut(s)	212, 224, 327
BstV1I	GCAGC	1 cut(s)	302
BstV2I	GAAGAC	1 cut(s)	212
BstZI	CGGCCG	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	212
BtgI	CCRYGG	1 cut(s)	302
BtsCI	GGATG	1 cut(s)	170
Cac8I	GCNNGC	2 cut(s)	204, 379
CfoI	GCGC	1 cut(s)	231
Cfr10I	RCCGGY	4 cut(s)	187, 202, 259, 276
Cfr13I	GGNCC	3 cut(s)	23, 82, 478
CseI	GACGC	1 cut(s)	415
CspAI	ACCGGT	2 cut(s)	187, 276
CviAII	CATG	2 cut(s)	303, 475
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
EaeI	YGGCCR	1 cut(s)	210
EagI	CGGCCG	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	244
EciI	GGCGGA	2 cut(s)	64, 189
EclXI	CGGCCG	1 cut(s)	210
Eco130I	CCWWGG	2 cut(s)	302, 437
Eco24I	GRGCYC	1 cut(s)	172
Eco47I	GGWCC	3 cut(s)	23, 82, 478
Eco52I	CGGCCG	1 cut(s)	210
EcoT14I	CCWWGG	2 cut(s)	302, 437
EcoT38I	GRGCYC	1 cut(s)	172
ErhI	CCWWGG	2 cut(s)	302, 437
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	2 cut(s)	306, 478
FaiI	YATR	7 cut(s)	76, 113, 304, 412, 476, 491, 493
FatI	CATG	2 cut(s)	302, 474
FauNDI	CATATG	1 cut(s)	491
Fnu4HI	GCNGC	4 cut(s)	47, 290, 293, 316
FokI	GGATG	1 cut(s)	177
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	4 cut(s)	47, 290, 293, 316
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	4 cut(s)	47, 290, 293, 316
HaeIII	GGCC	1 cut(s)	212
HapII	CCGG	9 cut(s)	67, 85, 188, 203, 213, 226, 260, 277, 328
HgaI	GACGC	1 cut(s)	415
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	2 cut(s)	306, 478
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HincII	GTYRAC	1 cut(s)	257
HindII	GTYRAC	1 cut(s)	257
HinfI	GANTC	2 cut(s)	324, 514
HpaII	CCGG	9 cut(s)	67, 85, 188, 203, 213, 226, 260, 277, 328
HphI	GGTGA	5 cut(s)	18, 177, 202, 266, 519
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	1 cut(s)	357
Hpy188III	TCNNGA	3 cut(s)	142, 342, 403
Hpy8I	GTNNAC	1 cut(s)	257
Hpy99I	CGWCG	4 cut(s)	36, 39, 273, 288
HpyAV	CCTTC	4 cut(s)	95, 384, 498, 522
HpyCH4III	ACNGT	3 cut(s)	73, 118, 136
HpyCH4V	TGCA	1 cut(s)	318
HpyF10VI	GCNNNNNNNGC	2 cut(s)	383, 415
Hsp92II	CATG	2 cut(s)	306, 478
HspAI	GCGC	1 cut(s)	229
KroI	GCCGGC	1 cut(s)	202
KroNI	GCCGGC	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	39
LmnI	GCTCC	2 cut(s)	63, 439
Lsp1109I	GCAGC	1 cut(s)	302
MaeIII	GTNAC	2 cut(s)	190, 272
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	4 cut(s)	212, 261, 454, 513
MhlI	GDGCHC	1 cut(s)	172
MluCI	AATT	1 cut(s)	426
MmeI	TCCRAC	1 cut(s)	110
MnlI	CCTC	7 cut(s)	50, 87, 236, 239, 245, 326, 503
MroNI	GCCGGC	1 cut(s)	202
MroXI	GAANNNNTTC	1 cut(s)	349
MslI	CAYNNNNRTG	1 cut(s)	307
MspI	CCGG	9 cut(s)	67, 85, 188, 203, 213, 226, 260, 277, 328
MspR9I	CCNGG	3 cut(s)	214, 226, 329
MwoI	GCNNNNNNNGC	2 cut(s)	383, 415
NaeI	GCCGGC	1 cut(s)	204
NciI	CCSGG	3 cut(s)	214, 226, 329
NcoI	CCATGG	1 cut(s)	302
NdeI	CATATG	1 cut(s)	491
NdeII	GATC	1 cut(s)	39
NgoMIV	GCCGGC	1 cut(s)	202
NlaIII	CATG	2 cut(s)	306, 478
NlaIV	GGNNCC	2 cut(s)	65, 435
NmuCI	GTSAC	2 cut(s)	190, 272
PcsI	WCGNNNNNNNCGW	1 cut(s)	292
PdiI	GCCGGC	1 cut(s)	204
PdmI	GAANNNNTTC	1 cut(s)	349
PfeI	GAWTC	2 cut(s)	324, 514
PflFI	GACNNNGTC	1 cut(s)	148
PinAI	ACCGGT	2 cut(s)	187, 276
PkrI	GCNGC	4 cut(s)	48, 291, 294, 317
PspN4I	GGNNCC	2 cut(s)	65, 435
PspPI	GGNCC	3 cut(s)	23, 82, 478
PsyI	GACNNNGTC	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	307
SatI	GCNGC	4 cut(s)	47, 290, 293, 316
Sau3AI	GATC	1 cut(s)	39
Sau96I	GGNCC	3 cut(s)	23, 82, 478
ScrFI	CCNGG	3 cut(s)	214, 226, 329
SduI	GDGCHC	1 cut(s)	172
SetI	ASST	7 cut(s)	84, 256, 337, 509, 525, 533, 538
SgrAI	CRCCGGYG	1 cut(s)	187
SinI	GGWCC	3 cut(s)	23, 82, 478
SmiMI	CAYNNNNRTG	1 cut(s)	307
Sse9I	AATT	1 cut(s)	426
SsiI	CCGC	5 cut(s)	46, 49, 200, 289, 292
SspI	AATATT	1 cut(s)	452
StyD4I	CCNGG	3 cut(s)	212, 224, 327
StyI	CCWWGG	2 cut(s)	302, 437
TaaI	ACNGT	3 cut(s)	73, 118, 136
TasI	AATT	1 cut(s)	426
TauI	GCSGC	3 cut(s)	49, 292, 295
TfiI	GAWTC	2 cut(s)	324, 514
TseFI	GTSAC	2 cut(s)	190, 272
TseI	GCWGC	1 cut(s)	315
Tsp45I	GTSAC	2 cut(s)	190, 272
TspGWI	ACGGA	2 cut(s)	52, 76
Tth111I	GACNNNGTC	1 cut(s)	148
VpaK11BI	GGWCC	3 cut(s)	23, 82, 478
XapI	RAATTY	1 cut(s)	426
XmnI	GAANNNNTTC	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.