Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0011554

Physical Location & Seq

Genomic Coordinates Reverse (-)

15996984 .. 15998089

Gene Structure 1106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0102100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCTGAGAATAGGTAGTCACCATCAAAACAACACAACGAAGTTTTATGGGACTTACTTGTTTGTCTTATTCAGTCTTCTCCTACTATCCTCCTATGTTAATGGTGACCATGTTTTTTTCGATAGTTCAGTAAATTATGATGATGTCTTAAGGCTTGTGCCTAAGGGTCCTAATCCTCGAGAGTCTCCACCGTTGGATGTCTTCAGGCGTATGCCTACGGGTCCCAACCCTCGGCAGTCACCACCGGTGCAAGATTTCGAGCATGAGGCATTTGATAGTTCATCCAACCATGATGATGTCTTAAGGCTTGTCCCCAAAGGTCCGAATCCTCAGCAGCCTCCACCACTAAATGTCTTATCGCGTGTGCCGCCTTCAGGCCCGAATCCTCGAGACTCTCCACTGTTGGATGTCTTCAGGCGTGTGCCTATGGATCCCAACCCTCGGCAGTCACCACCGGTGCAAGATTTCGAGCATGGGGCCTTTGACAGTTCATCCAACCATGATGATGTCTTAAGGCTTGTCCCCAAAGGTCCGAATCCTCAGCAGCCTCTACCACTGAATGTCTTAACGCGTGTGCCGCCTTCAGGCCCGAATCCTCGAGAGTCTCCACCGTTGGATGTCTTCAGGAAGTCACCACCGGTGCAAGATTTCGAGCATGGGGCCTTTGATAGTTCATCCAACCATGGTGATGTCTTAAGGCTTGTCCCCAAAGGTCTGAATCCACAACAGCCTCCACCACTGAATATCTTAACGCGTGTGCCGCCTTCAGGCTCGAATCCTCGAGAGTCTCCACCGTTGGATATCTTCAGGCGTGTACCTATGGGTTCCAACCCTCGGCAGTCACCACCGGTGCAAGATTTCGAGCACGAGGCATTTGATAGTTCATCCAACTATGATGATGTCTTAAGGCTTGTGCCTAAAGGTCCGAATCCTCAGCAGCCTCCACCGCTGATTTCGAGTATAAGACATCAAATAGTTTATACAATTTTGCTGATATCTCAAGGCGTGTACCTAAGGGACCTAATCCTCGAGAGTCTCCACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

348

Amino Acids

38.88

Weight (kDa)

6.34

Isoelectric Point (pI)

74.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011554)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12270
malus_domestica	MD04G1028000.v1.1
prunus_persica	Prupe.1G177400_v2.0.a1 Prupe.1G177400_v2.0.a1
pyrus_communis	pycom04g02460
rosa_chinensis	RchiOBHm_Chr4g0410301
rosa_laevigata	RLG00000008439
rosa_multiflora	Rmu_co8258587.1_g000001 Rmu_sc0002111.1_g000034 Rmu_sc0006329.1_g000001
rosa_roxburghii	Rroxscaffold_5G00355070
rosa_rugosa	Rorug04G0102000 Rorug04G0102100 Rorug04G0102200 Rorug04G0102200
rosa_samantha	Rh4AG159900 Rh4BG158800 Rh4CG172000 Rh4DG154600
rosa_wichuraiana	Rw4G013310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	361, 571, 754
AciI	CCGC	4 cut(s)	368, 578, 761, 947
AclWI	GGATC	2 cut(s)	425, 438
AcuI	CTGAAG	7 cut(s)	187, 357, 397, 567, 607, 750, 790
AfaI	GTAC	2 cut(s)	816, 1010
AfiI	CCNNNNNNNGG	6 cut(s)	231, 374, 441, 584, 767, 834
AflII	CTTAAG	5 cut(s)	148, 301, 511, 694, 904
AflIII	ACRYGT	2 cut(s)	569, 752
AgeI	ACCGGT	4 cut(s)	244, 454, 637, 847
Alw21I	GWGCWC	1 cut(s)	867
Alw26I	GTCTC	5 cut(s)	189, 384, 609, 792, 1040
AlwI	GGATC	2 cut(s)	425, 438
Ama87I	CYCGRG	5 cut(s)	177, 387, 597, 780, 1028
AoxI	GGCC	4 cut(s)	376, 477, 586, 660
ApeKI	GCWGC	3 cut(s)	334, 544, 937
AsiGI	ACCGGT	4 cut(s)	244, 454, 637, 847
AsuHPI	GGTGA	7 cut(s)	11, 116, 231, 441, 624, 698, 834
AvaI	CYCGRG	5 cut(s)	177, 387, 597, 780, 1028
AvaII	GGWCC	6 cut(s)	167, 221, 320, 530, 923, 1018
AxyI	CCTNAGG	2 cut(s)	162, 1013
BamHI	GGATCC	1 cut(s)	430
BauI	CACGAG	1 cut(s)	866
BbsI	GAAGAC	4 cut(s)	68, 193, 403, 613
Bbv12I	GWGCWC	1 cut(s)	867
BbvCI	CCTCAGC	3 cut(s)	330, 540, 933
BbvI	GCAGC	3 cut(s)	346, 556, 949
BccI	CCATC	1 cut(s)	30
BcoDI	GTCTC	5 cut(s)	189, 384, 609, 792, 1040
BfrI	CTTAAG	5 cut(s)	148, 301, 511, 694, 904
BisI	GCNGC	6 cut(s)	335, 368, 545, 578, 761, 938
BlsI	GCNGC	6 cut(s)	336, 369, 546, 579, 762, 939
Bme18I	GGWCC	6 cut(s)	167, 221, 320, 530, 923, 1018
BmeT110I	CYCGRG	5 cut(s)	177, 387, 597, 780, 1028
BmiI	GGNNCC	8 cut(s)	168, 222, 223, 432, 478, 661, 826, 1019
BpiI	GAAGAC	4 cut(s)	68, 193, 403, 613
Bpu10I	CCTNAGC	3 cut(s)	330, 540, 933
BpuEI	CTTGAG	1 cut(s)	984
BsaJI	CCNNGG	4 cut(s)	230, 440, 682, 833
BsaWI	WCCGGW	4 cut(s)	244, 454, 637, 847
Bsc4I	CCNNNNNNNGG	6 cut(s)	231, 374, 441, 584, 767, 834
Bse118I	RCCGGY	4 cut(s)	244, 454, 637, 847
Bse21I	CCTNAGG	2 cut(s)	162, 1013
BseDI	CCNNGG	4 cut(s)	230, 440, 682, 833
BseGI	GGATG	7 cut(s)	202, 281, 412, 491, 622, 674, 884
BseLI	CCNNNNNNNGG	6 cut(s)	231, 374, 441, 584, 767, 834
BseMII	CTCAG	3 cut(s)	344, 554, 947
BseXI	GCAGC	3 cut(s)	346, 556, 949
Bsh1236I	CGCG	3 cut(s)	361, 571, 754
BshFI	GGCC	4 cut(s)	378, 479, 588, 662
BshTI	ACCGGT	4 cut(s)	244, 454, 637, 847
BsiHKAI	GWGCWC	1 cut(s)	867
BsiHKCI	CYCGRG	5 cut(s)	177, 387, 597, 780, 1028
BsiSI	CCGG	4 cut(s)	245, 455, 638, 848
BslFI	GGGAC	6 cut(s)	64, 207, 296, 506, 689, 1031
BslI	CCNNNNNNNGG	6 cut(s)	231, 374, 441, 584, 767, 834
BsmAI	GTCTC	5 cut(s)	189, 384, 609, 792, 1040
BsmFI	GGGAC	6 cut(s)	64, 207, 296, 506, 689, 1031
BsnI	GGCC	4 cut(s)	378, 479, 588, 662
BsoBI	CYCGRG	5 cut(s)	177, 387, 597, 780, 1028
Bsp1286I	GDGCHC	1 cut(s)	867
Bsp143I	GATC	1 cut(s)	430
Bsp19I	CCATGG	1 cut(s)	682
BspACI	CCGC	4 cut(s)	368, 578, 761, 947
BspANI	GGCC	4 cut(s)	378, 479, 588, 662
BspCNI	CTCAG	3 cut(s)	343, 553, 946
BspFNI	CGCG	3 cut(s)	361, 571, 754
BspLI	GGNNCC	8 cut(s)	168, 222, 223, 432, 478, 661, 826, 1019
BspPI	GGATC	2 cut(s)	425, 438
BspTI	CTTAAG	5 cut(s)	148, 301, 511, 694, 904
BsrFI	RCCGGY	4 cut(s)	244, 454, 637, 847
BssAI	RCCGGY	4 cut(s)	244, 454, 637, 847
BssECI	CCNNGG	4 cut(s)	230, 440, 682, 833
BssMI	GATC	1 cut(s)	430
BssSI	CACGAG	1 cut(s)	866
BssT1I	CCWWGG	1 cut(s)	682
Bst2BI	CACGAG	1 cut(s)	866
Bst4CI	ACNGT	5 cut(s)	192, 402, 488, 612, 795
BstAFI	CTTAAG	5 cut(s)	148, 301, 511, 694, 904
BstDEI	CTNAG	6 cut(s)	5, 162, 330, 540, 933, 1013
BstDSI	CCRYGG	1 cut(s)	682
BstEII	GGTNACC	1 cut(s)	104
BstF5I	GGATG	7 cut(s)	202, 281, 412, 491, 622, 674, 884
BstFNI	CGCG	3 cut(s)	361, 571, 754
BstKTI	GATC	1 cut(s)	433
BstMAI	GTCTC	5 cut(s)	189, 384, 609, 792, 1040
BstMBI	GATC	1 cut(s)	430
BstMWI	GCNNNNNNNGC	4 cut(s)	367, 577, 760, 946
BstPI	GGTNACC	1 cut(s)	104
BstUI	CGCG	3 cut(s)	361, 571, 754
BstV1I	GCAGC	3 cut(s)	346, 556, 949
BstV2I	GAAGAC	4 cut(s)	68, 193, 403, 613
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
Bsu36I	CCTNAGG	2 cut(s)	162, 1013
BsuRI	GGCC	4 cut(s)	378, 479, 588, 662
BtgI	CCRYGG	1 cut(s)	682
BtsCI	GGATG	7 cut(s)	202, 281, 412, 491, 622, 674, 884
BtsIMutI	CAGTG	3 cut(s)	398, 554, 737
Cfr10I	RCCGGY	4 cut(s)	244, 454, 637, 847
Csp6I	GTAC	2 cut(s)	815, 1009
CspAI	ACCGGT	4 cut(s)	244, 454, 637, 847
CviAII	CATG	7 cut(s)	110, 263, 290, 473, 500, 656, 683
CviQI	GTAC	2 cut(s)	815, 1009
DdeI	CTNAG	6 cut(s)	5, 162, 330, 540, 933, 1013
DpnI	GATC	1 cut(s)	432
DpnII	GATC	1 cut(s)	430
Eco130I	CCWWGG	1 cut(s)	682
Eco32I	GATATC	2 cut(s)	802, 996
Eco47I	GGWCC	6 cut(s)	167, 221, 320, 530, 923, 1018
Eco57I	CTGAAG	7 cut(s)	187, 357, 397, 567, 607, 750, 790
Eco81I	CCTNAGG	2 cut(s)	162, 1013
Eco88I	CYCGRG	5 cut(s)	177, 387, 597, 780, 1028
Eco91I	GGTNACC	1 cut(s)	104
EcoO109I	RGGNCCY	5 cut(s)	167, 221, 477, 660, 1018
EcoO65I	GGTNACC	1 cut(s)	104
EcoRV	GATATC	2 cut(s)	802, 996
EcoT14I	CCWWGG	1 cut(s)	682
ErhI	CCWWGG	1 cut(s)	682
FaeI	CATG	7 cut(s)	113, 266, 293, 476, 503, 659, 686
FaqI	GGGAC	6 cut(s)	64, 207, 296, 506, 689, 1031
FatI	CATG	7 cut(s)	109, 262, 289, 472, 499, 655, 682
Fnu4HI	GCNGC	6 cut(s)	335, 368, 545, 578, 761, 938
FokI	GGATG	7 cut(s)	209, 268, 419, 478, 629, 661, 871
Fsp4HI	GCNGC	6 cut(s)	335, 368, 545, 578, 761, 938
GluI	GCNGC	6 cut(s)	335, 368, 545, 578, 761, 938
HaeIII	GGCC	4 cut(s)	378, 479, 588, 662
HapII	CCGG	4 cut(s)	245, 455, 638, 848
Hin1II	CATG	7 cut(s)	113, 266, 293, 476, 503, 659, 686
HpaII	CCGG	4 cut(s)	245, 455, 638, 848
HphI	GGTGA	7 cut(s)	11, 116, 231, 441, 624, 698, 834
Hpy166II	GTNNAC	2 cut(s)	815, 1009
Hpy188I	TCNGA	4 cut(s)	324, 534, 717, 927
Hpy188III	TCNNGA	6 cut(s)	179, 389, 599, 625, 782, 1030
Hpy8I	GTNNAC	2 cut(s)	815, 1009
HpyAV	CCTTC	3 cut(s)	381, 591, 774
HpyCH4III	ACNGT	5 cut(s)	192, 402, 488, 612, 795
HpyCH4V	TGCA	4 cut(s)	250, 460, 643, 853
HpyF10VI	GCNNNNNNNGC	4 cut(s)	367, 577, 760, 946
HpyF3I	CTNAG	6 cut(s)	5, 162, 330, 540, 933, 1013
Hsp92II	CATG	7 cut(s)	113, 266, 293, 476, 503, 659, 686
KflI	GGGWCCC	1 cut(s)	221
Kzo9I	GATC	1 cut(s)	430
Lsp1109I	GCAGC	3 cut(s)	346, 556, 949
MaeIII	GTNAC	6 cut(s)	17, 104, 237, 447, 630, 840
MalI	GATC	1 cut(s)	432
MboI	GATC	1 cut(s)	430
MboII	GAAGA	5 cut(s)	68, 193, 403, 613, 796
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	1 cut(s)	867
MluCI	AATT	2 cut(s)	133, 984
MluI	ACGCGT	2 cut(s)	569, 752
MlyI	GAGTC	5 cut(s)	191, 386, 611, 794, 1042
MmeI	TCCRAC	9 cut(s)	174, 309, 384, 519, 594, 702, 777, 852, 912
MseI	TTAA	8 cut(s)	99, 149, 302, 512, 566, 695, 749, 905
MslI	CAYNNNNRTG	3 cut(s)	294, 504, 687
MspA1I	CMGCKG	1 cut(s)	949
MspCI	CTTAAG	5 cut(s)	148, 301, 511, 694, 904
MspI	CCGG	4 cut(s)	245, 455, 638, 848
MvnI	CGCG	3 cut(s)	361, 571, 754
MwoI	GCNNNNNNNGC	4 cut(s)	367, 577, 760, 946
NcoI	CCATGG	1 cut(s)	682
NdeII	GATC	1 cut(s)	430
NlaIII	CATG	7 cut(s)	113, 266, 293, 476, 503, 659, 686
NlaIV	GGNNCC	8 cut(s)	168, 222, 223, 432, 478, 661, 826, 1019
NmeAIII	GCCGAG	3 cut(s)	211, 421, 814
NmuCI	GTSAC	6 cut(s)	17, 104, 237, 447, 630, 840
PaeR7I	CTCGAG	5 cut(s)	177, 387, 597, 780, 1028
PfeI	GAWTC	7 cut(s)	325, 382, 535, 592, 718, 775, 928
PinAI	ACCGGT	4 cut(s)	244, 454, 637, 847
PkrI	GCNGC	6 cut(s)	336, 369, 546, 579, 762, 939
PleI	GAGTC	5 cut(s)	190, 386, 610, 793, 1041
PpsI	GAGTC	5 cut(s)	190, 386, 610, 793, 1041
PpuMI	RGGWCCY	3 cut(s)	167, 221, 1018
Psp5II	RGGWCCY	3 cut(s)	167, 221, 1018
PspEI	GGTNACC	1 cut(s)	104
PspN4I	GGNNCC	8 cut(s)	168, 222, 223, 432, 478, 661, 826, 1019
PspPPI	RGGWCCY	3 cut(s)	167, 221, 1018
PsuI	RGATCY	1 cut(s)	430
RsaI	GTAC	2 cut(s)	816, 1010
RsaNI	GTAC	2 cut(s)	815, 1009
RseI	CAYNNNNRTG	3 cut(s)	294, 504, 687
SaqAI	TTAA	8 cut(s)	99, 149, 302, 512, 566, 695, 749, 905
SatI	GCNGC	6 cut(s)	335, 368, 545, 578, 761, 938
Sau3AI	GATC	1 cut(s)	430
SchI	GAGTC	5 cut(s)	191, 386, 611, 794, 1042
SduI	GDGCHC	1 cut(s)	867
SetI	ASST	8 cut(s)	16, 322, 532, 715, 820, 925, 1014, 1023
Sfr274I	CTCGAG	5 cut(s)	177, 387, 597, 780, 1028
SgrAI	CRCCGGYG	4 cut(s)	244, 454, 637, 847
SinI	GGWCC	6 cut(s)	167, 221, 320, 530, 923, 1018
SlaI	CTCGAG	5 cut(s)	177, 387, 597, 780, 1028
SmiMI	CAYNNNNRTG	3 cut(s)	294, 504, 687
Sse9I	AATT	2 cut(s)	133, 984
SsiI	CCGC	4 cut(s)	368, 578, 761, 947
StyI	CCWWGG	1 cut(s)	682
TaaI	ACNGT	5 cut(s)	192, 402, 488, 612, 795
TasI	AATT	2 cut(s)	133, 984
TauI	GCSGC	3 cut(s)	370, 580, 763
TfiI	GAWTC	7 cut(s)	325, 382, 535, 592, 718, 775, 928
Tru1I	TTAA	8 cut(s)	99, 149, 302, 512, 566, 695, 749, 905
Tru9I	TTAA	8 cut(s)	99, 149, 302, 512, 566, 695, 749, 905
TscAI	CASTG	3 cut(s)	405, 561, 744
TseFI	GTSAC	6 cut(s)	17, 104, 237, 447, 630, 840
TseI	GCWGC	3 cut(s)	334, 544, 937
Tsp45I	GTSAC	6 cut(s)	17, 104, 237, 447, 630, 840
TspDTI	ATGAA	4 cut(s)	270, 480, 663, 873
TspRI	CASTG	3 cut(s)	405, 561, 744
Vha464I	CTTAAG	5 cut(s)	148, 301, 511, 694, 904
VpaK11BI	GGWCC	6 cut(s)	167, 221, 320, 530, 923, 1018
XhoI	CTCGAG	5 cut(s)	177, 387, 597, 780, 1028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.