Rh4DG154600

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0011554
Physical Location & Seq
Reverse (-)
30897465 .. 30903265
5801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG154600.1

Sequence Viewer

Length: 1113 bp
ATGGTAGGTCCGGTGGGGGAGGCAAGAAGGGGTGGATATGACTGTGTGGTTGGGTTGGACTGTTTTCTGGACATCGTCAGGGCTTTAGGGATGGGCTCGTGTCTCTCCATCACCGGTGACAACTCCGCCGGCTACGGCCGGGTGTCTTCCCCGGCGCAGGGCAACAAGAGGAGGAAGAGGTTGACCGGCAACTCGTCGTCACCGGTTTCGTCGGCGGCGGCGAGTTCCATGGAGATGTGGCTGCACAGGATTCCGGGGAGGTTGTTCCTGAATGGCTTCTCTGATGTGGCTTCCCTGTTCAGCAAGCAAGGCAAGAAGGGTGTCAATCAGGACGCTATGATTGCTTGGGAGAATTTCGGCTCCAAGGAAGATACAATATTTTGTGGTGTTTTTGATGGGCATGGTCCTTGTGGTCATATGGTGGCGAAGAAGGTGAGGGATTCTCTACCTTTGAAGGTCAGCTCACAATGGGTGTTGAACACCAGCGCCGCGGATACTAACCACGCCGGTGCATCTGTGGAGACCAAGGACAGCCATGGTGAATTTTTCGCCACATTGAAAGATTCGTTTTTGAAGGCTTTTAAGGTCATGGACAAGGAGCTTAAGTTGCATCCTCGTATTGATTGCTATTGCAGTGGGACAACTGCAGTTACGTTGGTCAAGCAGGGTCAGGATCTTGTTATTGCAAATATTGGGGACTCTAGAGCTGTGCTAGGCACAAGAGATGAAGGGGGTTCTCTTGTTGCAGTTCAGTTGACCGTAGACTTAAAACCAAATCTTCCAAGGGAAGCCGAGAGGATTACGTTATGTAAAGGTCGAGTATTTGCTCTCCACAACGAGCCTGATGTCACTCGAGTTTGGTTGCCCAACAGTAATTCACCTGGGCTTGCTATGGCCCGGGCTTTTGGAGATTTCTGCCTAAAGGATTATGGTTTAATCTCTGTCCCTGATGTTTCTTATCGTCGCCTCACTGAGAAGGATGAATTTGTAGTACTGGCTACAGATGGGGTAAGAGATCAATCTGCATATATAATATTTACCTGCAACTTATTCATTACAACACAGTTTTACCTGCATATCTGGCTGTTGTACGATCTTCATGGCAAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

370

Amino Acids

40.33

Weight (kDa)

8.27

Isoelectric Point (pI)

29.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 103 - 339 2.8e-33 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1049, 1080
AccI GTMKAC 1 cut(s) 762
AccII CGCG 1 cut(s) 491
AciI CCGC 5 cut(s) 126, 215, 218, 489, 491
AclWI GGATC 1 cut(s) 681
AcoI YGGCCR 1 cut(s) 136
AcsI RAATTY 3 cut(s) 352, 542, 983
AfaI GTAC 2 cut(s) 993, 1091
AfiI CCNNNNNNNGG 2 cut(s) 157, 158
AflII CTTAAG 1 cut(s) 602
AgeI ACCGGT 2 cut(s) 113, 202
AgsI TTSAA 4 cut(s) 454, 478, 559, 574
AjnI CCWGG 1 cut(s) 880
AleI CACNNNNGTG 1 cut(s) 507
AluBI AGCT 3 cut(s) 462, 601, 707
AluI AGCT 3 cut(s) 462, 601, 707
Alw26I GTCTC 2 cut(s) 107, 515
AlwI GGATC 1 cut(s) 681
Ama87I CYCGRG 2 cut(s) 852, 897
AoxI GGCC 2 cut(s) 136, 894
ApeKI GCWGC 1 cut(s) 241
ApoI RAATTY 3 cut(s) 352, 542, 983
AsiGI ACCGGT 2 cut(s) 113, 202
Asp700I GAANNNNTTC 1 cut(s) 275
AspLEI GCGC 2 cut(s) 157, 488
AspS9I GGNCC 3 cut(s) 8, 404, 895
AsuC2I CCSGG 5 cut(s) 140, 152, 255, 898, 899
AsuHPI GGTGA 6 cut(s) 103, 128, 192, 445, 551, 870
AvaI CYCGRG 2 cut(s) 852, 897
AvaII GGWCC 2 cut(s) 8, 404
BanII GRGCYC 1 cut(s) 98
BauI CACGAG 1 cut(s) 97
BbsI GAAGAC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 228
BccI CCATC 4 cut(s) 85, 116, 389, 998
BceAI ACGGC 1 cut(s) 151
BciT130I CCWGG 1 cut(s) 882
BciVI GTATCC 1 cut(s) 487
BcnI CCSGG 5 cut(s) 140, 152, 255, 898, 899
BcoDI GTCTC 2 cut(s) 107, 515
BfaI CTAG 2 cut(s) 702, 713
BfmI CTRYAG 2 cut(s) 645, 999
BfoI RGCGCY 1 cut(s) 489
BfrI CTTAAG 1 cut(s) 602
BfuAI ACCTGC 2 cut(s) 1049, 1080
BfuI GTATCC 1 cut(s) 487
BisI GCNGC 4 cut(s) 216, 219, 242, 489
BlsI GCNGC 4 cut(s) 217, 220, 243, 490
BmcAI AGTACT 1 cut(s) 993
Bme1390I CCNGG 6 cut(s) 140, 152, 255, 882, 898, 899
Bme18I GGWCC 2 cut(s) 8, 404
BmeT110I CYCGRG 2 cut(s) 852, 897
BmgT120I GGNCC 3 cut(s) 8, 404, 895
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 6 cut(s) 140, 152, 255, 882, 898, 899
BmsI GCATC 2 cut(s) 521, 619
BpiI GAAGAC 1 cut(s) 138
BplI GAGNNNNNCTC 2 cut(s) 427, 459
BpuMI CCSGG 5 cut(s) 140, 152, 255, 898, 899
BsaI GGTCTC 1 cut(s) 515
BsaWI WCCGGW 3 cut(s) 10, 113, 202
BsaXI ACNNNNNCTCC 2 cut(s) 590, 620
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 158
Bse118I RCCGGY 5 cut(s) 113, 128, 185, 202, 506
Bse1I ACTGG 1 cut(s) 999
BseBI CCWGG 1 cut(s) 882
BseGI GGATG 3 cut(s) 96, 610, 985
BseLI CCNNNNNNNGG 2 cut(s) 157, 158
BseMII CTCAG 1 cut(s) 963
BseNI ACTGG 1 cut(s) 999
BseRI GAGGAG 1 cut(s) 184
BseX3I CGGCCG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 228
BsgI GTGCAG 1 cut(s) 227
Bsh1236I CGCG 1 cut(s) 491
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 2 cut(s) 138, 896
BshTI ACCGGT 2 cut(s) 113, 202
BsiEI CGRYCG 1 cut(s) 139
BsiHKCI CYCGRG 2 cut(s) 852, 897
BslFI GGGAC 3 cut(s) 652, 710, 929
BslI CCNNNNNNNGG 2 cut(s) 157, 158
BsmAI GTCTC 2 cut(s) 107, 515
BsmFI GGGAC 3 cut(s) 652, 710, 929
BsnI GGCC 2 cut(s) 138, 896
Bso31I GGTCTC 1 cut(s) 515
BsoBI CYCGRG 2 cut(s) 852, 897
Bsp1286I GDGCHC 1 cut(s) 98
Bsp143I GATC 3 cut(s) 673, 1015, 1093
Bsp19I CCATGG 2 cut(s) 228, 535
BspACI CCGC 5 cut(s) 126, 215, 218, 489, 491
BspANI GGCC 2 cut(s) 138, 896
BspCNI CTCAG 1 cut(s) 964
BspFNI CGCG 1 cut(s) 491
BspLI GGNNCC 1 cut(s) 361
BspMAI CTGCAG 1 cut(s) 649
BspMI ACCTGC 2 cut(s) 1049, 1080
BspPI GGATC 1 cut(s) 681
BspTI CTTAAG 1 cut(s) 602
BspTNI GGTCTC 1 cut(s) 515
BsrFI RCCGGY 5 cut(s) 113, 128, 185, 202, 506
BsrI ACTGG 1 cut(s) 999
BssAI RCCGGY 5 cut(s) 113, 128, 185, 202, 506
BssMI GATC 3 cut(s) 673, 1015, 1093
BssSI CACGAG 1 cut(s) 97
BssT1I CCWWGG 5 cut(s) 228, 363, 525, 535, 782
Bst2BI CACGAG 1 cut(s) 97
Bst2UI CCWGG 1 cut(s) 882
Bst4CI ACNGT 5 cut(s) 44, 62, 760, 872, 1065
Bst6I CTCTTC 1 cut(s) 170
BstAFI CTTAAG 1 cut(s) 602
BstC8I GCNNGC 3 cut(s) 130, 305, 888
BstDEI CTNAG 1 cut(s) 972
BstDSI CCRYGG 3 cut(s) 228, 489, 535
BstF5I GGATG 3 cut(s) 96, 610, 985
BstFNI CGCG 1 cut(s) 491
BstH2I RGCGCY 1 cut(s) 489
BstHHI GCGC 2 cut(s) 157, 488
BstKTI GATC 3 cut(s) 676, 1018, 1096
BstMAI GTCTC 2 cut(s) 107, 515
BstMBI GATC 3 cut(s) 673, 1015, 1093
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 4 cut(s) 309, 341, 607, 1081
BstNI CCWGG 1 cut(s) 882
BstSCI CCNGG 6 cut(s) 138, 150, 253, 880, 896, 897
BstSFI CTRYAG 2 cut(s) 645, 999
BstUI CGCG 1 cut(s) 491
BstV1I GCAGC 1 cut(s) 228
BstV2I GAAGAC 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 673
BstYI RGATCY 1 cut(s) 673
BstZI CGGCCG 1 cut(s) 136
BsuI GTATCC 1 cut(s) 487
BsuRI GGCC 2 cut(s) 138, 896
BtgI CCRYGG 3 cut(s) 228, 489, 535
BtsCI GGATG 3 cut(s) 96, 610, 985
BtsI GCAGTG 1 cut(s) 640
BtsIMutI CAGTG 2 cut(s) 640, 969
BveI ACCTGC 2 cut(s) 1049, 1080
Cac8I GCNNGC 3 cut(s) 130, 305, 888
CfoI GCGC 2 cut(s) 157, 488
Cfr10I RCCGGY 5 cut(s) 113, 128, 185, 202, 506
Cfr13I GGNCC 3 cut(s) 8, 404, 895
Cfr42I CCGCGG 1 cut(s) 492
Cfr9I CCCGGG 1 cut(s) 897
CseI GACGC 1 cut(s) 341
Csp6I GTAC 2 cut(s) 992, 1090
CspAI ACCGGT 2 cut(s) 113, 202
CviAII CATG 5 cut(s) 229, 401, 536, 589, 1100
CviQI GTAC 2 cut(s) 992, 1090
DdeI CTNAG 1 cut(s) 972
DpnI GATC 3 cut(s) 675, 1017, 1095
DpnII GATC 3 cut(s) 673, 1015, 1093
EaeI YGGCCR 1 cut(s) 136
EagI CGGCCG 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
EciI GGCGGA 1 cut(s) 115
EclXI CGGCCG 1 cut(s) 136
Eco130I CCWWGG 5 cut(s) 228, 363, 525, 535, 782
Eco24I GRGCYC 1 cut(s) 98
Eco31I GGTCTC 1 cut(s) 515
Eco47I GGWCC 2 cut(s) 8, 404
Eco52I CGGCCG 1 cut(s) 136
Eco88I CYCGRG 2 cut(s) 852, 897
EcoRII CCWGG 1 cut(s) 880
EcoT14I CCWWGG 5 cut(s) 228, 363, 525, 535, 782
EcoT38I GRGCYC 1 cut(s) 98
ErhI CCWWGG 5 cut(s) 228, 363, 525, 535, 782
FaeI CATG 5 cut(s) 232, 404, 539, 592, 1103
FaqI GGGAC 3 cut(s) 652, 710, 929
FatI CATG 5 cut(s) 228, 400, 535, 588, 1099
FauNDI CATATG 1 cut(s) 417
FblI GTMKAC 1 cut(s) 762
Fnu4HI GCNGC 4 cut(s) 216, 219, 242, 489
FokI GGATG 3 cut(s) 103, 597, 992
FriOI GRGCYC 1 cut(s) 98
Fsp4HI GCNGC 4 cut(s) 216, 219, 242, 489
FspBI CTAG 2 cut(s) 702, 713
GlaI GCGC 2 cut(s) 156, 487
GluI GCNGC 4 cut(s) 216, 219, 242, 489
HaeII RGCGCY 1 cut(s) 489
HaeIII GGCC 2 cut(s) 138, 896
HgaI GACGC 1 cut(s) 341
HhaI GCGC 2 cut(s) 157, 488
Hin1II CATG 5 cut(s) 232, 404, 539, 592, 1103
Hin6I GCGC 2 cut(s) 155, 486
HinP1I GCGC 2 cut(s) 155, 486
HincII GTYRAC 2 cut(s) 183, 756
HindII GTYRAC 2 cut(s) 183, 756
HinfI GANTC 4 cut(s) 250, 440, 563, 698
HphI GGTGA 6 cut(s) 103, 128, 192, 445, 551, 870
Hpy166II GTNNAC 3 cut(s) 183, 756, 763
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 5 cut(s) 68, 268, 329, 671, 702
Hpy8I GTNNAC 3 cut(s) 183, 756, 763
Hpy99I CGWCG 3 cut(s) 199, 214, 966
HpyAV CCTTC 7 cut(s) 21, 310, 424, 448, 568, 722, 970
HpyCH4III ACNGT 5 cut(s) 44, 62, 760, 872, 1065
HpyCH4IV ACGT 2 cut(s) 653, 803
HpyF10VI GCNNNNNNNGC 4 cut(s) 309, 341, 607, 1081
HpyF3I CTNAG 1 cut(s) 972
HpySE526I ACGT 2 cut(s) 653, 803
Hsp92II CATG 5 cut(s) 232, 404, 539, 592, 1103
HspAI GCGC 2 cut(s) 155, 486
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
KspI CCGCGG 1 cut(s) 492
Kzo9I GATC 3 cut(s) 673, 1015, 1093
LmnI GCTCC 2 cut(s) 365, 598
Lsp1109I GCAGC 1 cut(s) 228
LweI GCATC 2 cut(s) 521, 619
MaeI CTAG 2 cut(s) 702, 713
MaeII ACGT 2 cut(s) 653, 803
MaeIII GTNAC 4 cut(s) 116, 198, 649, 847
MalI GATC 3 cut(s) 675, 1017, 1095
MboI GATC 3 cut(s) 673, 1015, 1093
MboII GAAGA 6 cut(s) 138, 187, 380, 439, 770, 1088
MflI RGATCY 1 cut(s) 673
MhlI GDGCHC 1 cut(s) 98
MluCI AATT 4 cut(s) 352, 542, 874, 983
MlyI GAGTC 1 cut(s) 692
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 9 cut(s) 13, 162, 165, 171, 252, 429, 624, 789, 977
MroNI GCCGGC 1 cut(s) 128
MroXI GAANNNNTTC 1 cut(s) 275
MseI TTAA 4 cut(s) 582, 603, 767, 935
MslI CAYNNNNRTG 2 cut(s) 233, 507
MspA1I CMGCKG 1 cut(s) 491
MspCI CTTAAG 1 cut(s) 602
MspR9I CCNGG 6 cut(s) 140, 152, 255, 882, 898, 899
MvaI CCWGG 1 cut(s) 882
MvnI CGCG 1 cut(s) 491
MwoI GCNNNNNNNGC 4 cut(s) 309, 341, 607, 1081
NaeI GCCGGC 1 cut(s) 130
NciI CCSGG 5 cut(s) 140, 152, 255, 898, 899
NcoI CCATGG 2 cut(s) 228, 535
NdeI CATATG 1 cut(s) 417
NdeII GATC 3 cut(s) 673, 1015, 1093
NgoMIV GCCGGC 1 cut(s) 128
NlaIII CATG 5 cut(s) 232, 404, 539, 592, 1103
NlaIV GGNNCC 1 cut(s) 361
NmeAIII GCCGAG 1 cut(s) 817
NmuCI GTSAC 3 cut(s) 116, 198, 847
OliI CACNNNNGTG 1 cut(s) 507
PaeR7I CTCGAG 1 cut(s) 852
PcsI WCGNNNNNNNCGW 1 cut(s) 218
PdiI GCCGGC 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 275
PfeI GAWTC 3 cut(s) 250, 440, 563
PflFI GACNNNGTC 1 cut(s) 74
PinAI ACCGGT 2 cut(s) 113, 202
PkrI GCNGC 4 cut(s) 217, 220, 243, 490
PleI GAGTC 1 cut(s) 692
PpsI GAGTC 1 cut(s) 692
Psp6I CCWGG 1 cut(s) 880
PspGI CCWGG 1 cut(s) 880
PspN4I GGNNCC 1 cut(s) 361
PspPI GGNCC 3 cut(s) 8, 404, 895
PspXI VCTCGAGB 1 cut(s) 852
PstI CTGCAG 1 cut(s) 649
PsuI RGATCY 1 cut(s) 673
PsyI GACNNNGTC 1 cut(s) 74
RsaI GTAC 2 cut(s) 993, 1091
RsaNI GTAC 2 cut(s) 992, 1090
RseI CAYNNNNRTG 2 cut(s) 233, 507
SacII CCGCGG 1 cut(s) 492
SaqAI TTAA 4 cut(s) 582, 603, 767, 935
SatI GCNGC 4 cut(s) 216, 219, 242, 489
Sau3AI GATC 3 cut(s) 673, 1015, 1093
Sau96I GGNCC 3 cut(s) 8, 404, 895
ScaI AGTACT 1 cut(s) 993
SchI GAGTC 1 cut(s) 692
ScrFI CCNGG 6 cut(s) 140, 152, 255, 882, 898, 899
SduI GDGCHC 1 cut(s) 98
SfaNI GCATC 2 cut(s) 521, 619
SfcI CTRYAG 2 cut(s) 645, 999
Sfr274I CTCGAG 1 cut(s) 852
Sfr303I CCGCGG 1 cut(s) 492
SgrAI CRCCGGYG 2 cut(s) 113, 506
SgrBI CCGCGG 1 cut(s) 492
SinI GGWCC 2 cut(s) 8, 404
SlaI CTCGAG 1 cut(s) 852
SmaI CCCGGG 1 cut(s) 899
SmiMI CAYNNNNRTG 2 cut(s) 233, 507
SmlI CTYRAG 2 cut(s) 602, 852
SmoI CTYRAG 2 cut(s) 602, 852
SrfI GCCCGGGC 1 cut(s) 899
Sse9I AATT 4 cut(s) 352, 542, 874, 983
SsiI CCGC 5 cut(s) 126, 215, 218, 489, 491
SspI AATATT 3 cut(s) 378, 691, 1035
SspMI CTAG 2 cut(s) 702, 713
StyD4I CCNGG 6 cut(s) 138, 150, 253, 880, 896, 897
StyI CCWWGG 5 cut(s) 228, 363, 525, 535, 782
TaaI ACNGT 5 cut(s) 44, 62, 760, 872, 1065
TaiI ACGT 2 cut(s) 656, 806
TaqI TCGA 2 cut(s) 817, 853
TasI AATT 4 cut(s) 352, 542, 874, 983
TatI WGTACW 1 cut(s) 991
TauI GCSGC 3 cut(s) 218, 221, 491
TfiI GAWTC 3 cut(s) 250, 440, 563
Tru1I TTAA 4 cut(s) 582, 603, 767, 935
Tru9I TTAA 4 cut(s) 582, 603, 767, 935
TscAI CASTG 2 cut(s) 640, 976
TseFI GTSAC 3 cut(s) 116, 198, 847
TseI GCWGC 1 cut(s) 241
Tsp45I GTSAC 3 cut(s) 116, 198, 847
TspDTI ATGAA 4 cut(s) 741, 996, 1042, 1088
TspMI CCCGGG 1 cut(s) 897
TspRI CASTG 2 cut(s) 640, 976
Tth111I GACNNNGTC 1 cut(s) 74
Vha464I CTTAAG 1 cut(s) 602
VpaK11BI GGWCC 2 cut(s) 8, 404
XapI RAATTY 3 cut(s) 352, 542, 983
XbaI TCTAGA 1 cut(s) 701
XhoI CTCGAG 1 cut(s) 852
XmaI CCCGGG 1 cut(s) 897
XmiI GTMKAC 1 cut(s) 762
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 2 cut(s) 702, 713
ZrmI AGTACT 1 cut(s) 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.