Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0013028

Physical Location & Seq

Genomic Coordinates Forward (+)

42660361 .. 42665044

Gene Structure 4684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008920

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3159 bp

ATGAGAGCAGGCCTGAGCACGATCCAGCAAACCTTAACGCCGGAGGCGGCGAGCGTGTTGAACCACTCGATCGCCGAAGCGGGTCGTCGGAACCACGGCCAAACGACGCCCCTTCATGTAGCGGCAACGCTTCTATCTTCCCCCACCGGCTTTCTCCGCCAAGCATGCATCAAATCTCACCCCAATTCCTCTCACCCTCTTCAGTGCCGAGCACTGGAGCTCTGCTTCAGTGTGGCGCTGGAGCGGTTGCCCACCGCCCAGAACATGAGCCCCGGGATGGAGCCACCAATCTCCAATGCCCTCATGGCCGCCTTAAAGCGAGCTCAGGCTCACCAGCGCAGAGGCTGCCCGGAGCAGCAGCAACAGCCGCTCCTAGCTGTCAAGGTCGAACTCGAGCAGCTCATAATCTCGATTCTCGATGACCCGAGTGTTAGTCGGGTCATGCGGGAGGCCAGTTTCTCTAGTCCAGCTGTTAAAGCCACCATTGAACAATCTCTAAACTCTTCATCTGCCGCGGCGGCAGCGGCCTCTACCGCCGCCGCGGCGAATTCTTCCCCAATTGGATTGGGGTTCCGGCCGGCGGCCGGAGCCGCCGGGCGGAACGTGTATTTGAATCCCAGGCTGCAGGGGACAGCTGGGAATTCGGGACAAAACCGAGCCGAGGAAGTTAAAAAAGTCGTTGACATTTTTTCTAGGAGCAAGAAGAGGAATCCGGTATTGGTCGGCGATACGGAGCCCGAGGCTGTGACGAAAGAGCTGTTCAGGCGGATTCAGAGCATGGAATTGGAGCAAGGGCACCTCAAAAATGTCGAGGTTATTCATTTGGAGAAGGAGTTTTCTTCGCAAATATTGGGGAAGATGAAGGACTTGATGTCCTTGGTTGAGACCCGGATGGCGAGTTCGAATGGGGGAGGGATGATTCTTGATTTGGGCGACTTGAAATGGCTCGTGGAGCAGCCTGTTAGCTTGGGAGCGGTTCCGCCCGGCTCCGGTGGCCAACAGGTGGTTTCGGAGGCCGGGCGGGCGGCGGTGGCGGAAATGGGGAAGGTGTTGGGAAGGTTTGGAGAGGGTGGTGTTAATGGTAGTGGCCGGCTTTGGTTGATAGGGACTGCTACTTGTGAGACGTATTTGAGGTGCCAAGTCTATCACCCTTCAATGGAAACGGACTGGGATCTACAGGCAGTGCCGATTGCTGCCAGGACGCCGCATTCGGGATTGTTTTCTAGGATGGTGACGACGAACGGGATCCTTAGTAGCTCAGTTGAATCTTTGTCTCCGTTGAAAGGCTTTTCAACTGCTCAACCAAGGCTCGTGCCTGAGAACTTGGATGCTGCATGGAGAACAAGCTGTTGCCCGCAATGTACAGAAAGTTGTGAGCAAGAAGTAGCAAAATTGGTTGCAAAGGAGTCTGAAAAATCATCATCCGAGTCAAAATCAGAAGCAGCCCAACCAGCACTACCACAGTGGTTGCAGAATGCTAAAGCCCAGGACAGTAATGTCAAAACATCAGATCAGTTGCAGACTAAGAATCAAGATCAGACTTTGAACCAGAAGACTCAAGAATTACGAAAGGAATGGAAAGATACGTGTATGCGCCTTCATCCTACTTTTCATCAGCATAGTTTCGGCTCAGAGAGAATTGCTACCGCACCTCTCTCAATCACCAGCATGTACAATATGAACTTGCTTGGTCGCCAACCTTTCCAACTGAAATTGCAACCAAACAAAAGCTTCGGAGCTCTGCAATTGAACACAAATCTAAAGACCAGCCAACCATCTGAACGTGCAGCAGTTTCACATCCACGAAGCCCTGTAAGGACGGACCTGGTACTTGGGCAAAAAGAAGTCACTGAAACCATCACCCCTGAGCAAATGCATAAGGAGCGCGTCAAAGATTTTATTGGCTGCATGCCTTCCGAACCACAGAACAAGATACTTGAAAGGGAAACAGAAGAAAAGCAATTGTGCCAATTAGATGCTGATTCATTCAAAAAGCTGTACAAGGGTTTGATTGAGGTCTGGTGGCAGCCGGAAGCAGCAAACGCTGTTGCTGCTACGATAACCAATTGTAAGTTGGGTAATGGAAAGAGGCGTGGTGCCGGAGCAAGGGGAGACATGTGGTTGTTGTTCATGGGTCCTGACAGTGTTGGCAAGAAGAAGATGACATCAGCTCTTTCAGAAATGGTATCAGCGTCCACCCCGGTGATGATCTCTCTTAACAATAAACGCGGTAGTTGGGAATCAGACATGAGTTTTCGTGGAAAAATGGTGGTGGACCGAATAGCAGAGGCAGTTAGGAGGAACCCCTTTTCTGTAATCATGCTTGAGGACATTAATGAAGCAGATACGATAGTTCGCGGTAGCATAAAACGGGCAATGGAGAGAGGTCGTCTTGGCGACTCTTATGGCCGTGAAATCAGTCTTGGAAATGTTATCTTTATCCTCACTGCAAATTGGTTGCCAGAAAATTTGAAACACTTATCAAGCGGCAATTCTCTTGAAGAAAAGCTTGCTTGTATGGCTAGGAGTGGTTGGCAGTTAAAACTATCCGTTTGTGGAAGAAGTGCAAAACGGCGAGCAACTTGGTTACAGAGTGTTGAAGACAGAGCCACAAAGCCTAGGAAAGTTGCGGGTTCTGGACTAGGATTTGATCTGAATGAGGCTGCTGATGTTGAGGATGACAGAACAGATGGCTCACTTAATTCAAGTGATCTAACAGTTGATCATGAAGATGAGAACCGCCTCAGTAACAGGTCATTGCTCACAAGTACACCTTCATCAGTACTGAGGGAATTGCTTGATTCTGTTGACGATGCCATTGTGTTCAAGCCAGTGGATTTCAATCCCATTCGGAATAACATCACAAACTCAATCGCAAGAAGATTTTCAATGATCATTGGCGATGGGGTTTCCTTTGAATTGCAAGAGGATACTGTTGAAAAGATCCTTAGTGGGATATGGCTAGGCAAGACTGGCTTAGAAGAATGGACTGAAAAGGTGCTGGTTCCGAGCCTCCAACAGTTGAAGTCCCGCCTAGGTGTGACACTTGACGAGTCAATGGTGGTTAGACTTGAAGATGATGGAGATTCAGGTTGCCGGAGACATGGAGATTGGCTGCCGAGTAGCATCAATGTGGTGGCCGACGGATTAAGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0007623 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009791 GO:0009845 GO:0010033 GO:0014070 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0048511 GO:0048856 GO:0050896 GO:0080167 GO:0090351 GO:1901700 GO:1902347

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_2 Clp_N

Protein Analysis

1053

Amino Acids

115.07

Weight (kDa)

8.02

Isoelectric Point (pI)

51.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clp_N	PF02861	12 - 113	1.1e-06	Clp repeat (R) N-terminal domain
NBD_SMAX1	PF23569	219 - 400	1.1e-29	SMAX1 nucleotide binding domain
AAA_2	PF07724	708 - 826	2.7e-09	AAA domain (Cdc48 subfamily)
AAA_lid_SMAX1	PF26587	946 - 1029	1.5e-25	SMAX1-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57710
fragaria_vesca	FvH4_4g09820
malus_domestica	MD13G1261900.v1.1 MD16G1264200.v1.1
prunus_persica	Prupe.1G095200_v2.0.a1 Prupe.1G095200_v2.0.a1
pyrus_communis	pycom13g24720 pycom16g23290
rosa_chinensis	RchiOBHm_Chr4g0404601
rosa_laevigata	RLG00000008920
rosa_multiflora	Rmu_sc0002699.1_g000006
rosa_roxburghii	Rroxscaffold_5G00348750
rosa_rugosa	Rorug04G0047700
rosa_samantha	Rh4AG123800 Rh4BG117200 Rh4CG131900 Rh4DG116700
rosa_wichuraiana	Rw4G010030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1496
AccB1I	GGYRCC	3 cut(s)	795, 1134, 2096
AccB7I	CCANNNNNTGG	1 cut(s)	1003
AccBSI	CCGCTC	3 cut(s)	244, 370, 974
AccII	CGCG	5 cut(s)	515, 542, 1887, 2229, 2358
AclWI	GGATC	5 cut(s)	16, 1179, 1240, 1253, 2938
AcoI	YGGCCR	8 cut(s)	97, 306, 575, 582, 994, 1087, 2407, 3138
AcsI	RAATTY	3 cut(s)	547, 640, 2467
AcuI	CTGAAG	2 cut(s)	185, 211
AcyI	GRCGYC	2 cut(s)	107, 1202
AfaI	GTAC	6 cut(s)	1363, 1673, 1830, 2000, 2770, 2784
AflIII	ACRYGT	3 cut(s)	603, 1586, 2115
AhdI	GACNNNNNGTC	1 cut(s)	871
AjnI	CCWGG	4 cut(s)	617, 1196, 1485, 1824
AjuI	GAANNNNNNNTTGG	4 cut(s)	701, 733, 2406, 2438
AleI	CACNNNNGTG	1 cut(s)	2201
AloI	GAACNNNNNNTCC	2 cut(s)	883, 915
Alw21I	GWGCWC	5 cut(s)	20, 214, 222, 325, 1741
Alw26I	GTCTC	5 cut(s)	878, 1115, 1278, 2106, 3094
AlwI	GGATC	5 cut(s)	16, 1179, 1240, 1253, 2938
AlwNI	CAGNNNCTG	1 cut(s)	345
Ama87I	CYCGRG	4 cut(s)	272, 392, 424, 737
ApoI	RAATTY	3 cut(s)	547, 640, 2467
ArsI	GACNNNNNNTTYG	2 cut(s)	1192, 1224
AseI	ATTAAT	1 cut(s)	2334
Asp700I	GAANNNNTTC	1 cut(s)	2884
AspA2I	CCTAGG	2 cut(s)	2618, 3034
AspLEI	GCGC	4 cut(s)	238, 339, 1596, 1887
AspS9I	GGNCC	3 cut(s)	1822, 2135, 2275
AsuC2I	CCSGG	8 cut(s)	273, 274, 350, 595, 889, 984, 1018, 2201
AsuHPI	GGTGA	8 cut(s)	170, 185, 323, 1139, 1243, 1654, 1852, 2215
AsuII	TTCGAA	1 cut(s)	902
AvaI	CYCGRG	4 cut(s)	272, 392, 424, 737
AvaII	GGWCC	3 cut(s)	1822, 2135, 2275
AvrII	CCTAGG	2 cut(s)	2618, 3034
BaeGI	GKGCMC	1 cut(s)	798
BaeI	ACNNNNGTAYC	2 cut(s)	2337, 2370
BalI	TGGCCA	1 cut(s)	996
BamHI	GGATCC	1 cut(s)	1245
BanI	GGYRCC	3 cut(s)	795, 1134, 2096
BanII	GRGCYC	5 cut(s)	222, 272, 325, 738, 1741
BauI	CACGAG	2 cut(s)	947, 1310
BbsI	GAAGAC	2 cut(s)	1559, 2607
Bbv12I	GWGCWC	5 cut(s)	20, 214, 222, 325, 1741
BccI	CCATC	8 cut(s)	271, 886, 1222, 1783, 1865, 2684, 2897, 3074
BceAI	ACGGC	3 cut(s)	112, 2394, 2588
BciT130I	CCWGG	4 cut(s)	619, 1198, 1487, 1826
BciVI	GTATCC	1 cut(s)	2923
BclI	TGATCA	2 cut(s)	2722, 2892
BcnI	CCSGG	8 cut(s)	273, 274, 350, 595, 889, 984, 1018, 2201
BcoDI	GTCTC	5 cut(s)	878, 1115, 1278, 2106, 3094
BfaI	CTAG	9 cut(s)	374, 462, 693, 1224, 2523, 2619, 2642, 2963, 3035
BfmI	CTRYAG	2 cut(s)	623, 1175
BfoI	RGCGCY	1 cut(s)	239
BfuI	GTATCC	1 cut(s)	2923
BglI	GCCNNNNNGGC	4 cut(s)	305, 518, 542, 1022
BlnI	CCTAGG	2 cut(s)	2618, 3034
BmcAI	AGTACT	1 cut(s)	2784
Bme18I	GGWCC	3 cut(s)	1822, 2135, 2275
BmeRI	GACNNNNNGTC	1 cut(s)	871
BmeT110I	CYCGRG	4 cut(s)	272, 392, 424, 737
BmgT120I	GGNCC	3 cut(s)	1822, 2135, 2275
BmrI	ACTGGG	1 cut(s)	1177
BmsI	GCATC	5 cut(s)	177, 1318, 1966, 2803, 3135
BmuI	ACTGGG	1 cut(s)	1177
BpiI	GAAGAC	2 cut(s)	1559, 2607
BpmI	CTGGAG	2 cut(s)	236, 260
Bpu10I	CCTNAGC	3 cut(s)	14, 324, 1866
Bpu14I	TTCGAA	1 cut(s)	902
BpuEI	CTTGAG	2 cut(s)	1542, 2345
BpuMI	CCSGG	8 cut(s)	273, 274, 350, 595, 889, 984, 1018, 2201
BsaAI	YACGTR	1 cut(s)	1587
BsaBI	GATNNNNATC	1 cut(s)	2841
BsaHI	GRCGYC	2 cut(s)	107, 1202
BsaI	GGTCTC	1 cut(s)	878
BsaWI	WCCGGW	2 cut(s)	712, 989
BsaXI	ACNNNNNCTCC	4 cut(s)	354, 384, 818, 848
Bse118I	RCCGGY	3 cut(s)	146, 577, 1089
Bse1I	ACTGG	5 cut(s)	219, 453, 1172, 2831, 2977
Bse3DI	GCAATG	3 cut(s)	1364, 2382, 2756
Bse8I	GATNNNNATC	1 cut(s)	2841
BseBI	CCWGG	4 cut(s)	619, 1198, 1487, 1826
BseGI	GGATG	9 cut(s)	282, 897, 921, 1233, 1333, 1421, 1600, 1798, 2683
BseJI	GATNNNNATC	1 cut(s)	2841
BseMI	GCAATG	3 cut(s)	1364, 2382, 2756
BseMII	CTCAG	8 cut(s)	5, 338, 1272, 1308, 1644, 1857, 2758, 2777
BseNI	ACTGG	5 cut(s)	219, 453, 1172, 2831, 2977
BseSI	GKGCMC	1 cut(s)	798
BseX3I	CGGCCG	2 cut(s)	575, 582
BseYI	CCCAGC	1 cut(s)	635
BsgI	GTGCAG	1 cut(s)	1806
Bsh1236I	CGCG	5 cut(s)	515, 542, 1887, 2229, 2358
Bsh1285I	CGRYCG	3 cut(s)	72, 578, 585
BshNI	GGYRCC	3 cut(s)	795, 1134, 2096
BsiEI	CGRYCG	3 cut(s)	72, 578, 585
BsiHKAI	GWGCWC	5 cut(s)	20, 214, 222, 325, 1741
BsiHKCI	CYCGRG	4 cut(s)	272, 392, 424, 737
BslFI	GGGAC	4 cut(s)	643, 660, 1120, 3013
BsmAI	GTCTC	5 cut(s)	878, 1115, 1278, 2106, 3094
BsmBI	CGTCTC	1 cut(s)	1115
BsmFI	GGGAC	4 cut(s)	643, 660, 1120, 3013
BsmI	GAATGC	2 cut(s)	1207, 1480
Bso31I	GGTCTC	1 cut(s)	878
BsoBI	CYCGRG	4 cut(s)	272, 392, 424, 737
Bsp119I	TTCGAA	1 cut(s)	902
Bsp1286I	GDGCHC	8 cut(s)	20, 214, 222, 272, 325, 738, 798, 1741
Bsp1407I	TGTACA	3 cut(s)	1361, 1671, 1998
BspCNI	CTCAG	8 cut(s)	6, 337, 1271, 1309, 1643, 1858, 2757, 2778
BspFNI	CGCG	5 cut(s)	515, 542, 1887, 2229, 2358
BspHI	TCATGA	1 cut(s)	2725
BspMAI	CTGCAG	1 cut(s)	627
BspPI	GGATC	5 cut(s)	16, 1179, 1240, 1253, 2938
BspT104I	TTCGAA	1 cut(s)	902
BspT107I	GGYRCC	3 cut(s)	795, 1134, 2096
BspTNI	GGTCTC	1 cut(s)	878
BsrBI	CCGCTC	3 cut(s)	244, 370, 974
BsrDI	GCAATG	3 cut(s)	1364, 2382, 2756
BsrFI	RCCGGY	3 cut(s)	146, 577, 1089
BsrGI	TGTACA	3 cut(s)	1361, 1671, 1998
BsrI	ACTGG	5 cut(s)	219, 453, 1172, 2831, 2977
BssAI	RCCGGY	3 cut(s)	146, 577, 1089
BssNI	GRCGYC	2 cut(s)	107, 1202
BssSI	CACGAG	2 cut(s)	947, 1310
BssT1I	CCWWGG	4 cut(s)	876, 1304, 2618, 3034
Bst2BI	CACGAG	2 cut(s)	947, 1310
Bst2UI	CCWGG	4 cut(s)	619, 1198, 1487, 1826
Bst4CI	ACNGT	6 cut(s)	1464, 1493, 2144, 2719, 2935, 3021
Bst6I	CTCTTC	3 cut(s)	204, 508, 698
BstACI	GRCGYC	2 cut(s)	107, 1202
BstAPI	GCANNNNNTGC	1 cut(s)	345
BstAUI	TGTACA	3 cut(s)	1361, 1671, 1998
BstBAI	YACGTR	1 cut(s)	1587
BstBI	TTCGAA	1 cut(s)	902
BstDSI	CCRYGG	3 cut(s)	94, 513, 540
BstF5I	GGATG	9 cut(s)	282, 897, 921, 1233, 1333, 1421, 1600, 1798, 2683
BstFNI	CGCG	5 cut(s)	515, 542, 1887, 2229, 2358
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	4 cut(s)	238, 339, 1596, 1887
BstMAI	GTCTC	5 cut(s)	878, 1115, 1278, 2106, 3094
BstMCI	CGRYCG	3 cut(s)	72, 578, 585
BstNI	CCWGG	4 cut(s)	619, 1198, 1487, 1826
BstNSI	RCATGY	4 cut(s)	168, 1672, 1912, 2119
BstSFI	CTRYAG	2 cut(s)	623, 1175
BstSLI	GKGCMC	1 cut(s)	798
BstUI	CGCG	5 cut(s)	515, 542, 1887, 2229, 2358
BstV2I	GAAGAC	2 cut(s)	1559, 2607
BstX2I	RGATCY	3 cut(s)	1171, 1245, 2943
BstYI	RGATCY	3 cut(s)	1171, 1245, 2943
BstZI	CGGCCG	2 cut(s)	575, 582
BsuI	GTATCC	1 cut(s)	2923
BtgI	CCRYGG	3 cut(s)	94, 513, 540
BtgZI	GCGATG	1 cut(s)	2916
BtsCI	GGATG	9 cut(s)	282, 897, 921, 1233, 1333, 1421, 1600, 1798, 2683
BtsI	GCAGTG	2 cut(s)	1188, 2445
BtsIMutI	CAGTG	9 cut(s)	209, 212, 235, 1188, 1469, 1848, 2149, 2445, 2838
CaiI	CAGNNNCTG	1 cut(s)	345
CciI	TCATGA	1 cut(s)	2725
CfoI	GCGC	4 cut(s)	238, 339, 1596, 1887
Cfr10I	RCCGGY	3 cut(s)	146, 577, 1089
Cfr13I	GGNCC	3 cut(s)	1822, 2135, 2275
Cfr42I	CCGCGG	2 cut(s)	516, 543
Cfr9I	CCCGGG	1 cut(s)	272
CseI	GACGC	4 cut(s)	115, 1210, 1876, 2181
CsiI	ACCWGGT	1 cut(s)	1824
Csp6I	GTAC	6 cut(s)	1362, 1672, 1829, 1999, 2769, 2783
CspCI	CAANNNNNGTGG	2 cut(s)	1449, 1484
CviQI	GTAC	6 cut(s)	1362, 1672, 1829, 1999, 2769, 2783
DrdI	GACNNNNNNGTC	1 cut(s)	1496
DriI	GACNNNNNGTC	1 cut(s)	871
DseDI	GACNNNNNNGTC	1 cut(s)	1496
EaeI	YGGCCR	8 cut(s)	97, 306, 575, 582, 994, 1087, 2407, 3138
EagI	CGGCCG	2 cut(s)	575, 582
Eam1104I	CTCTTC	3 cut(s)	204, 508, 698
Eam1105I	GACNNNNNGTC	1 cut(s)	871
EarI	CTCTTC	3 cut(s)	204, 508, 698
EciI	GGCGGA	5 cut(s)	146, 613, 781, 969, 1049
Ecl136II	GAGCTC	3 cut(s)	220, 323, 1739
EclXI	CGGCCG	2 cut(s)	575, 582
Eco130I	CCWWGG	4 cut(s)	876, 1304, 2618, 3034
Eco147I	AGGCCT	1 cut(s)	12
Eco24I	GRGCYC	5 cut(s)	222, 272, 325, 738, 1741
Eco31I	GGTCTC	1 cut(s)	878
Eco47I	GGWCC	3 cut(s)	1822, 2135, 2275
Eco52I	CGGCCG	2 cut(s)	575, 582
Eco53kI	GAGCTC	3 cut(s)	220, 323, 1739
Eco57I	CTGAAG	2 cut(s)	185, 211
Eco88I	CYCGRG	4 cut(s)	272, 392, 424, 737
EcoICRI	GAGCTC	3 cut(s)	220, 323, 1739
EcoO109I	RGGNCCY	1 cut(s)	2135
EcoRI	GAATTC	2 cut(s)	547, 640
EcoRII	CCWGG	4 cut(s)	617, 1196, 1485, 1824
EcoT14I	CCWWGG	4 cut(s)	876, 1304, 2618, 3034
EcoT22I	ATGCAT	2 cut(s)	170, 1878
EcoT38I	GRGCYC	5 cut(s)	222, 272, 325, 738, 1741
ErhI	CCWWGG	4 cut(s)	876, 1304, 2618, 3034
Esp3I	CGTCTC	1 cut(s)	1115
FalI	AAGNNNNNCTT	6 cut(s)	2493, 2525, 2758, 2790, 2960, 2992
FaqI	GGGAC	4 cut(s)	643, 660, 1120, 3013
FauI	CCCGC	6 cut(s)	73, 438, 1014, 1362, 2623, 3038
FbaI	TGATCA	2 cut(s)	2722, 2892
FokI	GGATG	9 cut(s)	289, 904, 928, 1240, 1340, 1408, 1587, 1785, 2690
FriOI	GRGCYC	5 cut(s)	222, 272, 325, 738, 1741
FspBI	CTAG	9 cut(s)	374, 462, 693, 1224, 2523, 2619, 2642, 2963, 3035
GlaI	GCGC	4 cut(s)	237, 338, 1595, 1886
GsaI	CCCAGC	1 cut(s)	639
GsuI	CTGGAG	2 cut(s)	236, 260
HaeII	RGCGCY	1 cut(s)	239
HgaI	GACGC	4 cut(s)	115, 1210, 1876, 2181
HhaI	GCGC	4 cut(s)	238, 339, 1596, 1887
Hin1I	GRCGYC	2 cut(s)	107, 1202
Hin6I	GCGC	4 cut(s)	236, 337, 1594, 1885
HinP1I	GCGC	4 cut(s)	236, 337, 1594, 1885
HincII	GTYRAC	2 cut(s)	682, 2809
HindII	GTYRAC	2 cut(s)	682, 2809
HindIII	AAGCTT	2 cut(s)	1729, 2507
HphI	GGTGA	8 cut(s)	170, 185, 323, 1139, 1243, 1654, 1852, 2215
Hpy166II	GTNNAC	5 cut(s)	682, 2196, 2275, 2771, 2809
Hpy8I	GTNNAC	5 cut(s)	682, 2196, 2275, 2771, 2809
Hpy99I	CGWCG	4 cut(s)	90, 109, 1240, 3146
HpyAV	CCTTC	9 cut(s)	122, 823, 856, 1039, 1050, 1161, 1607, 1923, 2784
HpyCH4III	ACNGT	6 cut(s)	1464, 1493, 2144, 2719, 2935, 3021
HpyCH4IV	ACGT	4 cut(s)	603, 1124, 1586, 1783
HpySE526I	ACGT	4 cut(s)	603, 1124, 1586, 1783
Hsp92I	GRCGYC	2 cut(s)	107, 1202
HspAI	GCGC	4 cut(s)	236, 337, 1594, 1885
KroI	GCCGGC	2 cut(s)	577, 1089
KroNI	GCCGGC	2 cut(s)	579, 1091
Ksp22I	TGATCA	2 cut(s)	2722, 2892
KspI	CCGCGG	2 cut(s)	516, 543
LweI	GCATC	5 cut(s)	177, 1318, 1966, 2803, 3135
MabI	ACCWGGT	1 cut(s)	1824
MaeI	CTAG	9 cut(s)	374, 462, 693, 1224, 2523, 2619, 2642, 2963, 3035
MaeII	ACGT	4 cut(s)	603, 1124, 1586, 1783
MaeIII	GTNAC	6 cut(s)	745, 1231, 1846, 2586, 2747, 3040
MbiI	CCGCTC	3 cut(s)	244, 370, 974
MfeI	CAATTG	4 cut(s)	558, 1745, 1961, 2065
MflI	RGATCY	3 cut(s)	1171, 1245, 2943
MhlI	GDGCHC	8 cut(s)	20, 214, 222, 272, 325, 738, 798, 1741
MlsI	TGGCCA	1 cut(s)	996
MluNI	TGGCCA	1 cut(s)	996
MlyI	GAGTC	5 cut(s)	1415, 1436, 1549, 2393, 3062
MmeI	TCCRAC	3 cut(s)	68, 1729, 3040
Mox20I	TGGCCA	1 cut(s)	996
Mph1103I	ATGCAT	2 cut(s)	170, 1878
MroNI	GCCGGC	2 cut(s)	577, 1089
MroXI	GAANNNNTTC	1 cut(s)	2884
MscI	TGGCCA	1 cut(s)	996
MslI	CAYNNNNRTG	4 cut(s)	1667, 2201, 2730, 3131
Msp20I	TGGCCA	1 cut(s)	996
MspA1I	CMGCKG	5 cut(s)	470, 515, 524, 542, 635
MunI	CAATTG	4 cut(s)	558, 1745, 1961, 2065
Mva1269I	GAATGC	2 cut(s)	1207, 1480
MvaI	CCWGG	4 cut(s)	619, 1198, 1487, 1826
MvnI	CGCG	5 cut(s)	515, 542, 1887, 2229, 2358
NaeI	GCCGGC	2 cut(s)	579, 1091
NciI	CCSGG	8 cut(s)	273, 274, 350, 595, 889, 984, 1018, 2201
NgoMIV	GCCGGC	2 cut(s)	577, 1089
NmeAIII	GCCGAG	3 cut(s)	233, 685, 3144
NmuCI	GTSAC	4 cut(s)	745, 1231, 1846, 3040
NsiI	ATGCAT	2 cut(s)	170, 1878
NspI	RCATGY	4 cut(s)	168, 1672, 1912, 2119
NspV	TTCGAA	1 cut(s)	902
OliI	CACNNNNGTG	1 cut(s)	2201
PaeI	GCATGC	2 cut(s)	168, 1912
PaeR7I	CTCGAG	1 cut(s)	392
PagI	TCATGA	1 cut(s)	2725
PceI	AGGCCT	1 cut(s)	12
PciI	ACATGT	1 cut(s)	2115
PctI	GAATGC	2 cut(s)	1207, 1480
PdiI	GCCGGC	2 cut(s)	579, 1091
PdmI	GAANNNNTTC	1 cut(s)	2884
PflMI	CCANNNNNTGG	1 cut(s)	1003
Ple19I	CGATCG	1 cut(s)	72
PleI	GAGTC	5 cut(s)	1414, 1435, 1549, 2393, 3061
PpsI	GAGTC	5 cut(s)	1414, 1435, 1549, 2393, 3061
Ppu21I	YACGTR	1 cut(s)	1587
PpuMI	RGGWCCY	1 cut(s)	2135
PscI	ACATGT	1 cut(s)	2115
PshBI	ATTAAT	1 cut(s)	2334
Psp124BI	GAGCTC	3 cut(s)	222, 325, 1741
Psp5II	RGGWCCY	1 cut(s)	2135
Psp6I	CCWGG	4 cut(s)	617, 1196, 1485, 1824
PspFI	CCCAGC	1 cut(s)	635
PspGI	CCWGG	4 cut(s)	617, 1196, 1485, 1824
PspPI	GGNCC	3 cut(s)	1822, 2135, 2275
PspPPI	RGGWCCY	1 cut(s)	2135
PspXI	VCTCGAGB	1 cut(s)	392
PstI	CTGCAG	1 cut(s)	627
PstNI	CAGNNNCTG	1 cut(s)	345
PsuI	RGATCY	3 cut(s)	1171, 1245, 2943
PvuI	CGATCG	1 cut(s)	72
PvuII	CAGCTG	2 cut(s)	470, 635
RsaI	GTAC	6 cut(s)	1363, 1673, 1830, 2000, 2770, 2784
RsaNI	GTAC	6 cut(s)	1362, 1672, 1829, 1999, 2769, 2783
RseI	CAYNNNNRTG	4 cut(s)	1667, 2201, 2730, 3131
SacI	GAGCTC	3 cut(s)	222, 325, 1741
SacII	CCGCGG	2 cut(s)	516, 543
Sau96I	GGNCC	3 cut(s)	1822, 2135, 2275
ScaI	AGTACT	1 cut(s)	2784
SchI	GAGTC	5 cut(s)	1415, 1436, 1549, 2393, 3062
SduI	GDGCHC	8 cut(s)	20, 214, 222, 272, 325, 738, 798, 1741
SexAI	ACCWGGT	1 cut(s)	1824
SfaNI	GCATC	5 cut(s)	177, 1318, 1966, 2803, 3135
SfcI	CTRYAG	2 cut(s)	623, 1175
Sfr274I	CTCGAG	1 cut(s)	392
Sfr303I	CCGCGG	2 cut(s)	516, 543
SfuI	TTCGAA	1 cut(s)	902
SgrBI	CCGCGG	2 cut(s)	516, 543
SinI	GGWCC	3 cut(s)	1822, 2135, 2275
SlaI	CTCGAG	1 cut(s)	392
SmaI	CCCGGG	1 cut(s)	274
SmiMI	CAYNNNNRTG	4 cut(s)	1667, 2201, 2730, 3131
SmlI	CTYRAG	3 cut(s)	392, 1557, 2324
SmoI	CTYRAG	3 cut(s)	392, 1557, 2324
SphI	GCATGC	2 cut(s)	168, 1912
SseBI	AGGCCT	1 cut(s)	12
SspI	AATATT	1 cut(s)	849
SspMI	CTAG	9 cut(s)	374, 462, 693, 1224, 2523, 2619, 2642, 2963, 3035
SstI	GAGCTC	3 cut(s)	222, 325, 1741
StuI	AGGCCT	1 cut(s)	12
StyI	CCWWGG	4 cut(s)	876, 1304, 2618, 3034
TaaI	ACNGT	6 cut(s)	1464, 1493, 2144, 2719, 2935, 3021
TaiI	ACGT	4 cut(s)	606, 1127, 1589, 1786
TaqI	TCGA	7 cut(s)	68, 387, 393, 410, 417, 810, 902
TaqII	GACCGA	1 cut(s)	2292
TatI	WGTACW	5 cut(s)	1361, 1671, 1998, 2768, 2782
TscAI	CASTG	9 cut(s)	209, 219, 235, 1188, 1469, 1855, 2149, 2452, 2838
TseFI	GTSAC	4 cut(s)	745, 1231, 1846, 3040
Tsp45I	GTSAC	4 cut(s)	745, 1231, 1846, 3040
TspGWI	ACGGA	6 cut(s)	746, 1178, 1266, 1835, 2539, 3159
TspMI	CCCGGG	1 cut(s)	272
TspRI	CASTG	9 cut(s)	209, 219, 235, 1188, 1469, 1855, 2149, 2452, 2838
Van91I	CCANNNNNTGG	1 cut(s)	1003
VpaK11BI	GGWCC	3 cut(s)	1822, 2135, 2275
VspI	ATTAAT	1 cut(s)	2334
XapI	RAATTY	3 cut(s)	547, 640, 2467
XceI	RCATGY	4 cut(s)	168, 1672, 1912, 2119
XcmI	CCANNNNNNNNNTGG	2 cut(s)	301, 2071
XhoI	CTCGAG	1 cut(s)	392
XmaI	CCCGGG	1 cut(s)	272
XmaJI	CCTAGG	2 cut(s)	2618, 3034
XmnI	GAANNNNTTC	1 cut(s)	2884
XspI	CTAG	9 cut(s)	374, 462, 693, 1224, 2523, 2619, 2642, 2963, 3035
ZrmI	AGTACT	1 cut(s)	2784
Zsp2I	ATGCAT	2 cut(s)	170, 1878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.