Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0013028

Physical Location & Seq

Genomic Coordinates Reverse (-)

26810832 .. 26814524

Gene Structure 3693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG123800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3156 bp

ATGAGAGCAGGCCTGAGCACGATCCAGCAAACCTTAACGCCGGAGGCGGCGAGCGTCTTGAACCACTCGATCGCCGAAGCGGGTCGTCGGAACCACGGCCAAACGACGCCCCTTCATGTAGCGGCAACTCTTCTATCTTCCCCCACCGGCTTTCTCCGCCAAGCATGCATCAAATCTCACCCCAATTCCTCTCACCCTCTTCAGTGCCGAGCACTGGAGCTCTGCTTCAGTGTGGCGCTGGAGCGGTTGCCCACCGCCCAGAACATGAGCCCCGGGATGGAGCCTCCAATCTCCAATGCCCTCATGGCCGCCTTAAAGCGAGCTCAGGCTCACCAGCGCAGAGGCTGCCCGGAGCAGCAGCAACAGCCGCTCCTAGCTGTCAAAGTCGAACTCGAGCAGCTCATAATCTCGATTCTCGATGACCCAAGTGTTAGTCGGGTCATGCGGGAGGCCAGTTTCTCTAGTCCGGCTGTTAAAGCCACCATTGAACAATCTCTAAACTCTTCATCCGCCGCCGCGGCAGCGGCCTCCACCGCCGCCGCGGGAAATTCTTCCCCAATTGGATTGGGGTTCCGGCCGGCGGCCCCGGCCGCCGGGCGGAGCATGTATTTGAATCCCAGGCTGCAGGGGACAGCTGGGAATTCGGGACAAAACCGAGCCGAGGAAGTTAAAAAAGTCGTTGATATTTTGTCTAGGAGCAAGAAGAGGAATCCGGTATTGGTCGGCGATACGGAGCCCGACGCTGTGACGAAAGAGCTATTCAGGCGGATTCAGAGCATGGAATTGGGGCAAGGGCACCTCAAAAATGTCGAGGTCATTCATTTGGAGAAGGAGTTTTCTTCGCAAATATTGGGGAAGATGAAGGACTTGATGTCCTTGGTTGAGACCCGGATGGCGGGTTCGAATGGGGGAGGGATGATTCTTGATTTGGGCGACTTGAAATGGCTCGTGGAGCAGCCTGTTAGCTTGGGAGCGGTTCCGCCCGGCTCCGGTGGCCAACAGGTGGTTTCGGAGGCCGGGCGGGCGGCGGTGGCGGAAATGGGGAAGGTGTTGGGAAGGTTTGGAGAGGGTGGTGTTAATGGTAGTGGCCGGCTTTGGTTGATAGGGACTGCTACTTGTGAGACGTATTTGAGGTGCCAAGTCTATCACCCTTCAATGGAAACGGACTGGGATCTACAGGCAGTGCCGATTGCTGCCAGGACGCCGCATTCGGGATTGTTTCCTAGGATGGGGATGACAAACGGGATCCTTAGTAGCTCAGTTGAATCTTTGTCTCCGTTGAAAGGCTTTTCAACTGCTCAACCAAGGCTTGTGCCTGAGAACTTGGATGCTGCACGGAGAACAAGCTGTTGCCCGCAATGTACAGAAAGTTGTGAGCAAGAAGTAGCAAAATTGGTTGCGAAGGAGTCTGAGAAATCATCCTCGGAGTCAAAATCGGAAGCAGCTCAACCAGCACTACCACAGTGGTTGCAGAATGCTAAAGACCAGGACAGTAATGTCAAAACATCAGATCAGTTGCAGACTAAGAATCAAGATCAGACTTTGAACCAGAAGACTGAAGAATTACGAAAGGAATGGAAAGATACGTGTAAGCGCCTTCATCCTAATTTTCATCAGCATAGTTTCAGCTCAGAGAGAATTGCTCCCACACCTCTCTCAATCACCAGCATGTACAATATGAATTTGCTTGGTCGCCAACCTTTCCAACCGAAATTGCAACCAAACAAAAGCTTTGGGGCTCTGCAATTGAACACAAATCTAAAGACCAGCCAACCATCTGAACGTGCAGCAGTTTCACATCCACGAAGCCCTGTAAGGACGGACCTGGTTCTTGGGCAAAAAGAAGTCACTGAAACCTTCACCCCTGAGCAAATGCATAAGGAGCGCGTCAAAGACTTTATGGGCTGCATGCCTTCCGAACCACAGAACAAGATACTTGAAAGGCAAACAGATGAAAAGCAATTGTGCCAATTAGATGTTGATTCATTCAAAAAGCTGTACAAGGGTTTGATTGAGGTCTGGTGGCAGCCGGAAGCAGCAAACGCTGTTGCTGCTACGATAAACAATTGTAAGTTGGGTAATGGAAAGAGGCATGGTGCCGGAGCAAGGGGAGACATGTGGTTGTTGTTCATGGGTCCTGACACTGTTGGCAAGAAGAAGATGGCATCAGCTCTTTCAGAAATGGTATCTGGGTCCACCCCGGTGATGATCTCCCTTAACAATAAACGCAGTAGTTGGGAATCAGACATGAGTTTTCGGGGAAAAACGGTGGTGGACCGAATAGCAGAGGCAGTTAGGAGGAACCCCTTTTCTGTAATCATGCTTGAGGAAATTAATGAAGCAGATACGATAGTTCGCGGTAGCATAAAACGGGCAATGGAGAGAGGTCGTCTTGGCGACTCTTATGGCCGTGAAATCAGTCTTGGAAATGTTATCTTTATCCTCACTGCAAATTGGTTGCCAGAAAATTTGAAACACTATTCAAGCGGCAATTCTCTTGAAGAAAAGCTTGCTTGTATAGCTAGGAGTGGTTGGCAGTTAAAGCTATCCGTTTGTGGAAGAAGTGCAAAACGGCGAGCAACTTGGTTACAGAGTGTTGAAGACAGAGCCACAAAGCCTAGGAAAGATGCGGGTTCTGGACTAGGATTCGATCTGAATGAGACTGCTGATGTTGAGGATGACAGAACAGATGGCTCACTTAATTCAAGTGATCTAACAGTTGATCATGAAGATGACCGCCTCAATAACAGGTCATTGCTCACAAGTACACCTTCATCAGTACTGAGGGAATTGCTTGATTCTGTTGACGATGCCATTGTGTTCAAGCCAGTGGATTTCAATCCCATTCGGAATAACATCACAAACTCAATCACAAGAAGATTTTCAATGATCATTGGCGATGGAGTTTCCTTTGAATTGCAAGCGGATACTGTTGAAAAGATCCTTAGTGGGATATGGCTAGGCAAGACTGGCTTAGAAGAATGGACTGAAAAGGTGCTGGTTCCGAGCCTTCAACAGTTGAAGTCCCGCCTAGGTGTGACACTTGACGAGTCAATGGTGGTTAGACTCGAAGATGATGGAGATTCGGGTTGCCGGAGACATGGAGATTGGCTGCCGGGCAGCATCAATGTGGTGGCCGACGGATTAAGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0007623 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009791 GO:0009845 GO:0010033 GO:0014070 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0048511 GO:0048856 GO:0050896 GO:0080167 GO:0090351 GO:1901700 GO:1902347

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_2 Clp_N

Protein Analysis

1051

Amino Acids

114.97

Weight (kDa)

8.18

Isoelectric Point (pI)

52.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clp_N	PF02861	12 - 113	1.1e-06	Clp repeat (R) N-terminal domain
NBD_SMAX1	PF23569	219 - 400	8.9e-29	SMAX1 nucleotide binding domain
AAA_2	PF07724	708 - 826	3.4e-11	AAA domain (Cdc48 subfamily)
AAA_lid_SMAX1	PF26587	945 - 1028	2.8e-25	SMAX1-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57710
fragaria_vesca	FvH4_4g09820
malus_domestica	MD13G1261900.v1.1 MD16G1264200.v1.1
prunus_persica	Prupe.1G095200_v2.0.a1 Prupe.1G095200_v2.0.a1
pyrus_communis	pycom13g24720 pycom16g23290
rosa_chinensis	RchiOBHm_Chr4g0404601
rosa_laevigata	RLG00000008920
rosa_multiflora	Rmu_sc0002699.1_g000006
rosa_roxburghii	Rroxscaffold_5G00348750
rosa_rugosa	Rorug04G0047700
rosa_samantha	Rh4AG123800 Rh4BG117200 Rh4CG131900 Rh4DG116700
rosa_wichuraiana	Rw4G010030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1496
AccB1I	GGYRCC	3 cut(s)	795, 1134, 2096
AccB7I	CCANNNNNTGG	1 cut(s)	1003
AccBSI	CCGCTC	3 cut(s)	244, 370, 974
AccII	CGCG	4 cut(s)	518, 542, 1887, 2358
AclWI	GGATC	5 cut(s)	16, 1179, 1240, 1253, 2935
AcoI	YGGCCR	8 cut(s)	97, 306, 575, 588, 994, 1087, 2407, 3135
AcsI	RAATTY	4 cut(s)	547, 640, 1681, 2467
AcuI	CTGAAG	3 cut(s)	185, 211, 1578
AcyI	GRCGYC	2 cut(s)	107, 1202
AfaI	GTAC	5 cut(s)	1363, 1673, 2000, 2767, 2781
AflIII	ACRYGT	2 cut(s)	1586, 2115
AhdI	GACNNNNNGTC	1 cut(s)	871
AjnI	CCWGG	4 cut(s)	617, 1196, 1485, 1824
AjuI	GAANNNNNNNTTGG	4 cut(s)	701, 733, 2406, 2438
AleI	CACNNNNGTG	1 cut(s)	2201
AloI	GAACNNNNNNTCC	2 cut(s)	883, 915
Alw21I	GWGCWC	4 cut(s)	20, 214, 222, 325
Alw26I	GTCTC	6 cut(s)	878, 1115, 1278, 2106, 2654, 3091
AlwI	GGATC	5 cut(s)	16, 1179, 1240, 1253, 2935
AlwNI	CAGNNNCTG	1 cut(s)	345
Ama87I	CYCGRG	2 cut(s)	272, 392
ApoI	RAATTY	4 cut(s)	547, 640, 1681, 2467
ArsI	GACNNNNNNTTYG	2 cut(s)	1192, 1224
AseI	ATTAAT	1 cut(s)	2334
Asp700I	GAANNNNTTC	2 cut(s)	550, 2881
AspA2I	CCTAGG	3 cut(s)	1223, 2618, 3031
AspLEI	GCGC	4 cut(s)	238, 339, 1596, 1887
AspS9I	GGNCC	5 cut(s)	583, 1822, 2135, 2193, 2275
AsuHPI	GGTGA	7 cut(s)	170, 185, 323, 1139, 1654, 1852, 2215
AsuII	TTCGAA	1 cut(s)	902
AvaI	CYCGRG	2 cut(s)	272, 392
AvaII	GGWCC	4 cut(s)	1822, 2135, 2193, 2275
AvrII	CCTAGG	3 cut(s)	1223, 2618, 3031
BaeGI	GKGCMC	1 cut(s)	798
BaeI	ACNNNNGTAYC	2 cut(s)	2337, 2370
BalI	TGGCCA	1 cut(s)	996
BamHI	GGATCC	1 cut(s)	1245
BanI	GGYRCC	3 cut(s)	795, 1134, 2096
BanII	GRGCYC	5 cut(s)	222, 272, 325, 738, 1741
BauI	CACGAG	1 cut(s)	947
BbsI	GAAGAC	2 cut(s)	1559, 2607
Bbv12I	GWGCWC	4 cut(s)	20, 214, 222, 325
BccI	CCATC	8 cut(s)	271, 886, 1222, 1783, 2155, 2684, 2894, 3071
BceAI	ACGGC	3 cut(s)	112, 2394, 2588
BciT130I	CCWGG	4 cut(s)	619, 1198, 1487, 1826
BciVI	GTATCC	1 cut(s)	2920
BclI	TGATCA	2 cut(s)	2722, 2889
BcoDI	GTCTC	6 cut(s)	878, 1115, 1278, 2106, 2654, 3091
BfaI	CTAG	9 cut(s)	374, 462, 693, 1224, 2523, 2619, 2642, 2960, 3032
BfmI	CTRYAG	2 cut(s)	623, 1175
BfoI	RGCGCY	2 cut(s)	239, 1597
BfuI	GTATCC	1 cut(s)	2920
BglI	GCCNNNNNGGC	3 cut(s)	305, 518, 1022
BlnI	CCTAGG	3 cut(s)	1223, 2618, 3031
BmcAI	AGTACT	1 cut(s)	2781
Bme18I	GGWCC	4 cut(s)	1822, 2135, 2193, 2275
BmeRI	GACNNNNNGTC	1 cut(s)	871
BmeT110I	CYCGRG	2 cut(s)	272, 392
BmgT120I	GGNCC	5 cut(s)	583, 1822, 2135, 2193, 2275
BmrI	ACTGGG	1 cut(s)	1177
BmsI	GCATC	6 cut(s)	177, 1318, 2174, 2617, 2800, 3132
BmuI	ACTGGG	1 cut(s)	1177
BpiI	GAAGAC	2 cut(s)	1559, 2607
BplI	GAGNNNNNCTC	2 cut(s)	1627, 1659
BpmI	CTGGAG	2 cut(s)	236, 260
Bpu10I	CCTNAGC	3 cut(s)	14, 324, 1866
Bpu14I	TTCGAA	1 cut(s)	902
BpuEI	CTTGAG	1 cut(s)	2345
BsaAI	YACGTR	1 cut(s)	1587
BsaBI	GATNNNNATC	1 cut(s)	2838
BsaHI	GRCGYC	2 cut(s)	107, 1202
BsaI	GGTCTC	1 cut(s)	878
BsaWI	WCCGGW	2 cut(s)	712, 989
BsaXI	ACNNNNNCTCC	4 cut(s)	354, 384, 818, 848
Bse118I	RCCGGY	3 cut(s)	146, 577, 1089
Bse1I	ACTGG	5 cut(s)	219, 453, 1172, 2828, 2974
Bse3DI	GCAATG	3 cut(s)	1364, 2382, 2753
Bse8I	GATNNNNATC	1 cut(s)	2838
BseBI	CCWGG	4 cut(s)	619, 1198, 1487, 1826
BseJI	GATNNNNATC	1 cut(s)	2838
BseMI	GCAATG	3 cut(s)	1364, 2382, 2753
BseMII	CTCAG	8 cut(s)	5, 338, 1272, 1308, 1401, 1644, 1857, 2774
BseNI	ACTGG	5 cut(s)	219, 453, 1172, 2828, 2974
BseSI	GKGCMC	1 cut(s)	798
BseX3I	CGGCCG	2 cut(s)	575, 588
BseYI	CCCAGC	1 cut(s)	635
BsgI	GTGCAG	2 cut(s)	1317, 1806
Bsh1236I	CGCG	4 cut(s)	518, 542, 1887, 2358
Bsh1285I	CGRYCG	3 cut(s)	72, 578, 591
BshNI	GGYRCC	3 cut(s)	795, 1134, 2096
BsiEI	CGRYCG	3 cut(s)	72, 578, 591
BsiHKAI	GWGCWC	4 cut(s)	20, 214, 222, 325
BsiHKCI	CYCGRG	2 cut(s)	272, 392
BslFI	GGGAC	4 cut(s)	643, 660, 1120, 3010
BsmAI	GTCTC	6 cut(s)	878, 1115, 1278, 2106, 2654, 3091
BsmBI	CGTCTC	1 cut(s)	1115
BsmFI	GGGAC	4 cut(s)	643, 660, 1120, 3010
BsmI	GAATGC	2 cut(s)	1207, 1480
Bso31I	GGTCTC	1 cut(s)	878
BsoBI	CYCGRG	2 cut(s)	272, 392
Bsp119I	TTCGAA	1 cut(s)	902
Bsp1286I	GDGCHC	8 cut(s)	20, 214, 222, 272, 325, 738, 798, 1741
Bsp1407I	TGTACA	3 cut(s)	1361, 1671, 1998
BspCNI	CTCAG	8 cut(s)	6, 337, 1271, 1309, 1402, 1643, 1858, 2775
BspFNI	CGCG	4 cut(s)	518, 542, 1887, 2358
BspHI	TCATGA	1 cut(s)	2725
BspMAI	CTGCAG	1 cut(s)	627
BspPI	GGATC	5 cut(s)	16, 1179, 1240, 1253, 2935
BspT104I	TTCGAA	1 cut(s)	902
BspT107I	GGYRCC	3 cut(s)	795, 1134, 2096
BspTNI	GGTCTC	1 cut(s)	878
BsrBI	CCGCTC	3 cut(s)	244, 370, 974
BsrDI	GCAATG	3 cut(s)	1364, 2382, 2753
BsrFI	RCCGGY	3 cut(s)	146, 577, 1089
BsrGI	TGTACA	3 cut(s)	1361, 1671, 1998
BsrI	ACTGG	5 cut(s)	219, 453, 1172, 2828, 2974
BssAI	RCCGGY	3 cut(s)	146, 577, 1089
BssNI	GRCGYC	2 cut(s)	107, 1202
BssSI	CACGAG	1 cut(s)	947
BssT1I	CCWWGG	5 cut(s)	876, 1223, 1304, 2618, 3031
Bst2BI	CACGAG	1 cut(s)	947
Bst2UI	CCWGG	4 cut(s)	619, 1198, 1487, 1826
Bst4CI	ACNGT	7 cut(s)	1464, 1493, 2146, 2269, 2719, 2932, 3018
Bst6I	CTCTTC	4 cut(s)	135, 204, 508, 698
BstACI	GRCGYC	2 cut(s)	107, 1202
BstAPI	GCANNNNNTGC	1 cut(s)	345
BstAUI	TGTACA	3 cut(s)	1361, 1671, 1998
BstBAI	YACGTR	1 cut(s)	1587
BstBI	TTCGAA	1 cut(s)	902
BstDSI	CCRYGG	3 cut(s)	94, 516, 540
BstFNI	CGCG	4 cut(s)	518, 542, 1887, 2358
BstH2I	RGCGCY	2 cut(s)	239, 1597
BstHHI	GCGC	4 cut(s)	238, 339, 1596, 1887
BstMAI	GTCTC	6 cut(s)	878, 1115, 1278, 2106, 2654, 3091
BstMCI	CGRYCG	3 cut(s)	72, 578, 591
BstNI	CCWGG	4 cut(s)	619, 1198, 1487, 1826
BstNSI	RCATGY	5 cut(s)	168, 607, 1672, 1912, 2119
BstSFI	CTRYAG	2 cut(s)	623, 1175
BstSLI	GKGCMC	1 cut(s)	798
BstUI	CGCG	4 cut(s)	518, 542, 1887, 2358
BstV2I	GAAGAC	2 cut(s)	1559, 2607
BstX2I	RGATCY	3 cut(s)	1171, 1245, 2940
BstYI	RGATCY	3 cut(s)	1171, 1245, 2940
BstZI	CGGCCG	2 cut(s)	575, 588
BsuI	GTATCC	1 cut(s)	2920
BtgI	CCRYGG	3 cut(s)	94, 516, 540
BtgZI	GCGATG	1 cut(s)	2913
BtsI	GCAGTG	2 cut(s)	1188, 2445
BtsIMutI	CAGTG	9 cut(s)	209, 212, 235, 1188, 1469, 1848, 2142, 2445, 2835
CaiI	CAGNNNCTG	1 cut(s)	345
CciI	TCATGA	1 cut(s)	2725
CfoI	GCGC	4 cut(s)	238, 339, 1596, 1887
Cfr10I	RCCGGY	3 cut(s)	146, 577, 1089
Cfr13I	GGNCC	5 cut(s)	583, 1822, 2135, 2193, 2275
Cfr42I	CCGCGG	2 cut(s)	519, 543
Cfr9I	CCCGGG	1 cut(s)	272
CseI	GACGC	5 cut(s)	43, 115, 749, 1210, 1876
CsiI	ACCWGGT	1 cut(s)	1824
Csp6I	GTAC	5 cut(s)	1362, 1672, 1999, 2766, 2780
CspCI	CAANNNNNGTGG	2 cut(s)	1449, 1484
CviQI	GTAC	5 cut(s)	1362, 1672, 1999, 2766, 2780
DrdI	GACNNNNNNGTC	1 cut(s)	1496
DriI	GACNNNNNGTC	1 cut(s)	871
DseDI	GACNNNNNNGTC	1 cut(s)	1496
EaeI	YGGCCR	8 cut(s)	97, 306, 575, 588, 994, 1087, 2407, 3135
EagI	CGGCCG	2 cut(s)	575, 588
Eam1104I	CTCTTC	4 cut(s)	135, 204, 508, 698
Eam1105I	GACNNNNNGTC	1 cut(s)	871
EarI	CTCTTC	4 cut(s)	135, 204, 508, 698
EciI	GGCGGA	6 cut(s)	146, 499, 613, 781, 969, 1049
Ecl136II	GAGCTC	2 cut(s)	220, 323
EclXI	CGGCCG	2 cut(s)	575, 588
Eco130I	CCWWGG	5 cut(s)	876, 1223, 1304, 2618, 3031
Eco147I	AGGCCT	1 cut(s)	12
Eco24I	GRGCYC	5 cut(s)	222, 272, 325, 738, 1741
Eco31I	GGTCTC	1 cut(s)	878
Eco47I	GGWCC	4 cut(s)	1822, 2135, 2193, 2275
Eco52I	CGGCCG	2 cut(s)	575, 588
Eco53kI	GAGCTC	2 cut(s)	220, 323
Eco57I	CTGAAG	3 cut(s)	185, 211, 1578
Eco88I	CYCGRG	2 cut(s)	272, 392
EcoICRI	GAGCTC	2 cut(s)	220, 323
EcoO109I	RGGNCCY	1 cut(s)	2135
EcoRI	GAATTC	1 cut(s)	640
EcoRII	CCWGG	4 cut(s)	617, 1196, 1485, 1824
EcoT14I	CCWWGG	5 cut(s)	876, 1223, 1304, 2618, 3031
EcoT22I	ATGCAT	2 cut(s)	170, 1878
EcoT38I	GRGCYC	5 cut(s)	222, 272, 325, 738, 1741
ErhI	CCWWGG	5 cut(s)	876, 1223, 1304, 2618, 3031
Esp3I	CGTCTC	1 cut(s)	1115
FalI	AAGNNNNNCTT	6 cut(s)	2493, 2525, 2755, 2787, 2957, 2989
FaqI	GGGAC	4 cut(s)	643, 660, 1120, 3010
FauI	CCCGC	8 cut(s)	73, 438, 535, 889, 1014, 1362, 2623, 3035
FbaI	TGATCA	2 cut(s)	2722, 2889
FriOI	GRGCYC	5 cut(s)	222, 272, 325, 738, 1741
FspBI	CTAG	9 cut(s)	374, 462, 693, 1224, 2523, 2619, 2642, 2960, 3032
GlaI	GCGC	4 cut(s)	237, 338, 1595, 1886
GsaI	CCCAGC	1 cut(s)	639
GsuI	CTGGAG	2 cut(s)	236, 260
HaeII	RGCGCY	2 cut(s)	239, 1597
HgaI	GACGC	5 cut(s)	43, 115, 749, 1210, 1876
HhaI	GCGC	4 cut(s)	238, 339, 1596, 1887
Hin1I	GRCGYC	2 cut(s)	107, 1202
Hin6I	GCGC	4 cut(s)	236, 337, 1594, 1885
HinP1I	GCGC	4 cut(s)	236, 337, 1594, 1885
HincII	GTYRAC	1 cut(s)	2806
HindII	GTYRAC	1 cut(s)	2806
HindIII	AAGCTT	2 cut(s)	1729, 2507
HphI	GGTGA	7 cut(s)	170, 185, 323, 1139, 1654, 1852, 2215
Hpy166II	GTNNAC	4 cut(s)	2196, 2275, 2768, 2806
Hpy8I	GTNNAC	4 cut(s)	2196, 2275, 2768, 2806
Hpy99I	CGWCG	4 cut(s)	90, 109, 743, 3143
HpyCH4III	ACNGT	7 cut(s)	1464, 1493, 2146, 2269, 2719, 2932, 3018
HpyCH4IV	ACGT	3 cut(s)	1124, 1586, 1783
HpySE526I	ACGT	3 cut(s)	1124, 1586, 1783
Hsp92I	GRCGYC	2 cut(s)	107, 1202
HspAI	GCGC	4 cut(s)	236, 337, 1594, 1885
KroI	GCCGGC	2 cut(s)	577, 1089
KroNI	GCCGGC	2 cut(s)	579, 1091
Ksp22I	TGATCA	2 cut(s)	2722, 2889
KspI	CCGCGG	2 cut(s)	519, 543
LweI	GCATC	6 cut(s)	177, 1318, 2174, 2617, 2800, 3132
MabI	ACCWGGT	1 cut(s)	1824
MaeI	CTAG	9 cut(s)	374, 462, 693, 1224, 2523, 2619, 2642, 2960, 3032
MaeII	ACGT	3 cut(s)	1124, 1586, 1783
MaeIII	GTNAC	4 cut(s)	745, 1846, 2586, 3037
MbiI	CCGCTC	3 cut(s)	244, 370, 974
MfeI	CAATTG	4 cut(s)	558, 1745, 1961, 2065
MflI	RGATCY	3 cut(s)	1171, 1245, 2940
MhlI	GDGCHC	8 cut(s)	20, 214, 222, 272, 325, 738, 798, 1741
MlsI	TGGCCA	1 cut(s)	996
MluNI	TGGCCA	1 cut(s)	996
MlyI	GAGTC	5 cut(s)	1415, 1436, 2393, 3059, 3060
MmeI	TCCRAC	2 cut(s)	68, 1729
Mox20I	TGGCCA	1 cut(s)	996
Mph1103I	ATGCAT	2 cut(s)	170, 1878
MroNI	GCCGGC	2 cut(s)	577, 1089
MroXI	GAANNNNTTC	2 cut(s)	550, 2881
MscI	TGGCCA	1 cut(s)	996
MslI	CAYNNNNRTG	4 cut(s)	1667, 2201, 2730, 3128
Msp20I	TGGCCA	1 cut(s)	996
MspA1I	CMGCKG	4 cut(s)	518, 524, 542, 635
MunI	CAATTG	4 cut(s)	558, 1745, 1961, 2065
Mva1269I	GAATGC	2 cut(s)	1207, 1480
MvaI	CCWGG	4 cut(s)	619, 1198, 1487, 1826
MvnI	CGCG	4 cut(s)	518, 542, 1887, 2358
NaeI	GCCGGC	2 cut(s)	579, 1091
NgoMIV	GCCGGC	2 cut(s)	577, 1089
NmeAIII	GCCGAG	2 cut(s)	233, 685
NmuCI	GTSAC	3 cut(s)	745, 1846, 3037
NsiI	ATGCAT	2 cut(s)	170, 1878
NspI	RCATGY	5 cut(s)	168, 607, 1672, 1912, 2119
NspV	TTCGAA	1 cut(s)	902
OliI	CACNNNNGTG	1 cut(s)	2201
PaeI	GCATGC	2 cut(s)	168, 1912
PaeR7I	CTCGAG	1 cut(s)	392
PagI	TCATGA	1 cut(s)	2725
PceI	AGGCCT	1 cut(s)	12
PciI	ACATGT	1 cut(s)	2115
PctI	GAATGC	2 cut(s)	1207, 1480
PdiI	GCCGGC	2 cut(s)	579, 1091
PdmI	GAANNNNTTC	2 cut(s)	550, 2881
PflMI	CCANNNNNTGG	1 cut(s)	1003
Ple19I	CGATCG	1 cut(s)	72
PleI	GAGTC	5 cut(s)	1414, 1435, 2393, 3058, 3060
PpsI	GAGTC	5 cut(s)	1414, 1435, 2393, 3058, 3060
Ppu21I	YACGTR	1 cut(s)	1587
PpuMI	RGGWCCY	1 cut(s)	2135
PscI	ACATGT	1 cut(s)	2115
PshBI	ATTAAT	1 cut(s)	2334
Psp124BI	GAGCTC	2 cut(s)	222, 325
Psp5II	RGGWCCY	1 cut(s)	2135
Psp6I	CCWGG	4 cut(s)	617, 1196, 1485, 1824
PspFI	CCCAGC	1 cut(s)	635
PspGI	CCWGG	4 cut(s)	617, 1196, 1485, 1824
PspPI	GGNCC	5 cut(s)	583, 1822, 2135, 2193, 2275
PspPPI	RGGWCCY	1 cut(s)	2135
PspXI	VCTCGAGB	1 cut(s)	392
PstI	CTGCAG	1 cut(s)	627
PstNI	CAGNNNCTG	1 cut(s)	345
PsuI	RGATCY	3 cut(s)	1171, 1245, 2940
PvuI	CGATCG	1 cut(s)	72
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	5 cut(s)	1363, 1673, 2000, 2767, 2781
RsaNI	GTAC	5 cut(s)	1362, 1672, 1999, 2766, 2780
RseI	CAYNNNNRTG	4 cut(s)	1667, 2201, 2730, 3128
SacI	GAGCTC	2 cut(s)	222, 325
SacII	CCGCGG	2 cut(s)	519, 543
Sau96I	GGNCC	5 cut(s)	583, 1822, 2135, 2193, 2275
ScaI	AGTACT	1 cut(s)	2781
SchI	GAGTC	5 cut(s)	1415, 1436, 2393, 3059, 3060
SduI	GDGCHC	8 cut(s)	20, 214, 222, 272, 325, 738, 798, 1741
SexAI	ACCWGGT	1 cut(s)	1824
SfaNI	GCATC	6 cut(s)	177, 1318, 2174, 2617, 2800, 3132
SfcI	CTRYAG	2 cut(s)	623, 1175
Sfr274I	CTCGAG	1 cut(s)	392
Sfr303I	CCGCGG	2 cut(s)	519, 543
SfuI	TTCGAA	1 cut(s)	902
SgrBI	CCGCGG	2 cut(s)	519, 543
SinI	GGWCC	4 cut(s)	1822, 2135, 2193, 2275
SlaI	CTCGAG	1 cut(s)	392
SmaI	CCCGGG	1 cut(s)	274
SmiMI	CAYNNNNRTG	4 cut(s)	1667, 2201, 2730, 3128
SmlI	CTYRAG	2 cut(s)	392, 2324
SmoI	CTYRAG	2 cut(s)	392, 2324
SphI	GCATGC	2 cut(s)	168, 1912
SseBI	AGGCCT	1 cut(s)	12
SspI	AATATT	1 cut(s)	849
SspMI	CTAG	9 cut(s)	374, 462, 693, 1224, 2523, 2619, 2642, 2960, 3032
SstI	GAGCTC	2 cut(s)	222, 325
StuI	AGGCCT	1 cut(s)	12
StyI	CCWWGG	5 cut(s)	876, 1223, 1304, 2618, 3031
TaaI	ACNGT	7 cut(s)	1464, 1493, 2146, 2269, 2719, 2932, 3018
TaiI	ACGT	3 cut(s)	1127, 1589, 1786
TaqI	TCGA	9 cut(s)	68, 387, 393, 410, 417, 810, 902, 2649, 3069
TaqII	GACCGA	1 cut(s)	2292
TatI	WGTACW	5 cut(s)	1361, 1671, 1998, 2765, 2779
TscAI	CASTG	9 cut(s)	209, 219, 235, 1188, 1469, 1855, 2149, 2452, 2835
TseFI	GTSAC	3 cut(s)	745, 1846, 3037
Tsp45I	GTSAC	3 cut(s)	745, 1846, 3037
TspGWI	ACGGA	7 cut(s)	746, 1178, 1266, 1351, 1835, 2539, 3156
TspMI	CCCGGG	1 cut(s)	272
TspRI	CASTG	9 cut(s)	209, 219, 235, 1188, 1469, 1855, 2149, 2452, 2835
Van91I	CCANNNNNTGG	1 cut(s)	1003
VpaK11BI	GGWCC	4 cut(s)	1822, 2135, 2193, 2275
VspI	ATTAAT	1 cut(s)	2334
XapI	RAATTY	4 cut(s)	547, 640, 1681, 2467
XceI	RCATGY	5 cut(s)	168, 607, 1672, 1912, 2119
XcmI	CCANNNNNNNNNTGG	1 cut(s)	301
XhoI	CTCGAG	1 cut(s)	392
XmaI	CCCGGG	1 cut(s)	272
XmaJI	CCTAGG	3 cut(s)	1223, 2618, 3031
XmnI	GAANNNNTTC	2 cut(s)	550, 2881
XspI	CTAG	9 cut(s)	374, 462, 693, 1224, 2523, 2619, 2642, 2960, 3032
ZrmI	AGTACT	1 cut(s)	2781
Zsp2I	ATGCAT	2 cut(s)	170, 1878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.