Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0013028

Physical Location & Seq

Genomic Coordinates Reverse (-)

7389880 .. 7390496

Gene Structure 617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0047700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTCGTCAGCTAGGTTCGGTAAGCTGGAGGTGGATATTGAAATCAAGGCTCCTGCTGAAAGATTCTTTGAATTCATAACGCGGAAAACACACATGTTATCGAATACCAGTCCTGATAAAGTTGTGAGTTGTGAATTGCTTGAAGGTGACTGGGGAAAAGAAGCGTCTGTCATCTCCTGGAATTATGTTCTAGATGGGAATGCTAGAGCTGGCAAGGAGTTGCTTGAAGCCGTAGACATCGAAAGAAATTCGGTAACTTATAGAGTTGTCGATGGATACTTGCTGCAGTATTACAAGAGCTTTAAGAGAAGTTGTGAAGCCACCCCAAAAGGAAAAGGAGAAGAAGAGGGAACCCGTGTTCACTGGACTCTGGAATATGAGAAGCTGCATGACAAAGTTCCGGAGCCACATACCAAGCTCCAATTCATACTGGATCTCGTCAAAGATTTTGATGCTCACCCTAGCAGCCAAGAACATCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0007623 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009791 GO:0009845 GO:0010033 GO:0014070 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0048511 GO:0048856 GO:0050896 GO:0080167 GO:0090351 GO:1901700 GO:1902347

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_2 Clp_N

Protein Analysis

160

Amino Acids

18.39

Weight (kDa)

5.55

Isoelectric Point (pI)

34.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	7 - 153	7.7e-43	Pathogenesis-related protein Bet v 1 family
Polyketide_cyc2	PF10604	8 - 133	3e-10	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57710
fragaria_vesca	FvH4_4g09820
malus_domestica	MD13G1261900.v1.1 MD16G1264200.v1.1
prunus_persica	Prupe.1G095200_v2.0.a1 Prupe.1G095200_v2.0.a1
pyrus_communis	pycom13g24720 pycom16g23290
rosa_chinensis	RchiOBHm_Chr4g0404601
rosa_laevigata	RLG00000008920
rosa_multiflora	Rmu_sc0002699.1_g000006
rosa_roxburghii	Rroxscaffold_5G00348750
rosa_rugosa	Rorug04G0047700
rosa_samantha	Rh4AG123800 Rh4BG117200 Rh4CG131900 Rh4DG116700
rosa_wichuraiana	Rw4G010030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	234
AccII	CGCG	1 cut(s)	82
AccIII	TCCGGA	1 cut(s)	400
AciI	CCGC	1 cut(s)	82
AclWI	GGATC	1 cut(s)	441
AcsI	RAATTY	2 cut(s)	71, 247
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	4 cut(s)	41, 71, 143, 227
AjnI	CCWGG	1 cut(s)	176
AjuI	GAANNNNNNNTTGG	2 cut(s)	407, 439
AloI	GAACNNNNNNTCC	2 cut(s)	342, 374
AluBI	AGCT	6 cut(s)	11, 25, 209, 300, 385, 418
AluI	AGCT	6 cut(s)	11, 25, 209, 300, 385, 418
AlwI	GGATC	1 cut(s)	441
Aor13HI	TCCGGA	1 cut(s)	400
ApeKI	GCWGC	3 cut(s)	283, 385, 465
ApoI	RAATTY	2 cut(s)	71, 247
AsuHPI	GGTGA	2 cut(s)	158, 449
BbvI	GCAGC	3 cut(s)	270, 372, 477
BccI	CCATC	2 cut(s)	188, 266
BceAI	ACGGC	1 cut(s)	215
BciT130I	CCWGG	1 cut(s)	178
BciVI	GTATCC	1 cut(s)	269
BfaI	CTAG	4 cut(s)	12, 191, 204, 462
BfmI	CTRYAG	1 cut(s)	284
BfuI	GTATCC	1 cut(s)	269
BisI	GCNGC	3 cut(s)	284, 386, 466
BlsI	GCNGC	3 cut(s)	285, 387, 467
Bme1390I	CCNGG	1 cut(s)	178
BmiI	GGNNCC	3 cut(s)	51, 352, 405
BmrFI	CCNGG	1 cut(s)	178
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	442
BmuI	ACTGGG	1 cut(s)	160
BpmI	CTGGAG	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	400
Bse1I	ACTGG	4 cut(s)	108, 155, 368, 435
BseAI	TCCGGA	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	178
BseNI	ACTGG	4 cut(s)	108, 155, 368, 435
BseXI	GCAGC	3 cut(s)	270, 372, 477
Bsh1236I	CGCG	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	401
BsmI	GAATGC	1 cut(s)	205
Bsp13I	TCCGGA	1 cut(s)	400
Bsp143I	GATC	1 cut(s)	433
BspACI	CCGC	1 cut(s)	82
BspEI	TCCGGA	1 cut(s)	400
BspFNI	CGCG	1 cut(s)	82
BspLI	GGNNCC	3 cut(s)	51, 352, 405
BspMAI	CTGCAG	1 cut(s)	288
BspPI	GGATC	1 cut(s)	441
BsrI	ACTGG	4 cut(s)	108, 155, 368, 435
BssMI	GATC	1 cut(s)	433
Bst2UI	CCWGG	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	339
BstC8I	GCNNGC	1 cut(s)	211
BstFNI	CGCG	1 cut(s)	82
BstKTI	GATC	1 cut(s)	436
BstMBI	GATC	1 cut(s)	433
BstNI	CCWGG	1 cut(s)	178
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	176
BstSFI	CTRYAG	1 cut(s)	284
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	3 cut(s)	270, 372, 477
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BsuI	GTATCC	1 cut(s)	269
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	211
CseI	GACGC	1 cut(s)	153
CviAII	CATG	2 cut(s)	94, 389
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
EcoRI	GAATTC	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	176
FaeI	CATG	2 cut(s)	97, 392
FaiI	YATR	9 cut(s)	77, 95, 186, 261, 378, 390, 411, 428, 481
FatI	CATG	2 cut(s)	93, 388
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	3 cut(s)	284, 386, 466
Fsp4HI	GCNGC	3 cut(s)	284, 386, 466
FspBI	CTAG	4 cut(s)	12, 191, 204, 462
GluI	GCNGC	3 cut(s)	284, 386, 466
GsuI	CTGGAG	1 cut(s)	47
HapII	CCGG	1 cut(s)	401
HgaI	GACGC	1 cut(s)	153
Hin1II	CATG	2 cut(s)	97, 392
HinfI	GANTC	2 cut(s)	63, 367
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	2 cut(s)	158, 449
Hpy166II	GTNNAC	2 cut(s)	235, 361
Hpy188III	TCNNGA	4 cut(s)	113, 191, 371, 401
Hpy8I	GTNNAC	2 cut(s)	235, 361
HpyAV	CCTTC	1 cut(s)	137
HpyCH4V	TGCA	2 cut(s)	286, 388
Hsp92II	CATG	2 cut(s)	97, 392
Kpn2I	TCCGGA	1 cut(s)	400
Kzo9I	GATC	1 cut(s)	433
LmnI	GCTCC	3 cut(s)	55, 403, 423
Lsp1109I	GCAGC	3 cut(s)	270, 372, 477
LweI	GCATC	1 cut(s)	442
MaeI	CTAG	4 cut(s)	12, 191, 204, 462
MaeIII	GTNAC	2 cut(s)	146, 253
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MboII	GAAGA	2 cut(s)	353, 356
MflI	RGATCY	1 cut(s)	433
MluCI	AATT	5 cut(s)	71, 134, 181, 247, 422
MlyI	GAGTC	1 cut(s)	361
MnlI	CCTC	2 cut(s)	22, 340
MroI	TCCGGA	1 cut(s)	400
MseI	TTAA	1 cut(s)	303
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	1 cut(s)	178
Mva1269I	GAATGC	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	178
MvnI	CGCG	1 cut(s)	82
NdeII	GATC	1 cut(s)	433
NlaIII	CATG	2 cut(s)	97, 392
NlaIV	GGNNCC	3 cut(s)	51, 352, 405
NmuCI	GTSAC	1 cut(s)	146
NspI	RCATGY	1 cut(s)	97
PciI	ACATGT	1 cut(s)	93
PctI	GAATGC	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	63
PfoI	TCCNGGA	1 cut(s)	176
PkrI	GCNGC	3 cut(s)	285, 387, 467
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
PscI	ACATGT	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	176
PspN4I	GGNNCC	3 cut(s)	51, 352, 405
PstI	CTGCAG	1 cut(s)	288
PsuI	RGATCY	1 cut(s)	433
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	3 cut(s)	284, 386, 466
Sau3AI	GATC	1 cut(s)	433
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	178
SetI	ASST	9 cut(s)	13, 17, 27, 33, 148, 211, 302, 387, 420
SfaNI	GCATC	1 cut(s)	442
SfcI	CTRYAG	1 cut(s)	284
Sse9I	AATT	5 cut(s)	71, 134, 181, 247, 422
SsiI	CCGC	1 cut(s)	82
SspMI	CTAG	4 cut(s)	12, 191, 204, 462
StyD4I	CCNGG	1 cut(s)	176
TaqI	TCGA	3 cut(s)	101, 240, 270
TasI	AATT	5 cut(s)	71, 134, 181, 247, 422
TfiI	GAWTC	1 cut(s)	63
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	1 cut(s)	368
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	3 cut(s)	283, 385, 465
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	2 cut(s)	64, 415
TspRI	CASTG	1 cut(s)	368
XapI	RAATTY	2 cut(s)	71, 247
XbaI	TCTAGA	1 cut(s)	190
XceI	RCATGY	1 cut(s)	97
XmiI	GTMKAC	1 cut(s)	234
XspI	CTAG	4 cut(s)	12, 191, 204, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.