Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0017026

Physical Location & Seq

Genomic Coordinates Forward (+)

10315238 .. 10318086

Gene Structure 2849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011531

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCTGGCCGGGCCGTGCGACGAGTCCTGTCTGCGGCGGCAAAAGAAGTTACGGAAAGTGTTGTAGGGGTGGATCTGGCCGATTCCAGGGTACTATTCCTGGCAAAAGCTAGCATTGCTACCTTCTTCTCATGGATAAGATTTTTTGTTGTTGTTTTTGTGAGGGTGAAGAGGGCTTTCAATCTCAATTTAAGGAAAGTGTTTGTGATGATTGATGCCAATATAGACAAAGTTTTCTTTACAAGGAAGAGCCTTCTGATTGGAGCCAACTTTGCTTATGCTGCATCCGGTTATGATGAAAAGGCAGCAAGCTTGAATCATGCAATCTCTTTGCCCCAACAGTTACAATACTTCAAGGAATACGAGGGTAAGCTAAACAAGGTTGCAGGTAGTAAGAAAGCAGCAACAATCATCAATGGTGCACTATACTTATTGAGTGCTGGCCGTAGTGACTTTGTTCAGAACTACTATGTCAATCCTTTTGTTAACGAACTCTACACTCCCGACCAGTACGGCGACATCCTCGTTTGTGCTTTCACACACTTTATTACGGATGTGTATGGTTTGGGAGCAAGGAAAATAGGTGTGACATCAAGATTCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0048046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

202

Amino Acids

22.37

Weight (kDa)

9.73

Isoelectric Point (pI)

22.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017026)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000011531 RLG00000023814 RLG00000035693
rosa_multiflora	Rmu_sc0001496.1_g000020
rosa_samantha	Rh1AG181400 Rh2BG182500 Rh2BG570700 Rh3DG251100 Rh4CG006500 Rh5AG502600 Rh6AG366400
rosa_wichuraiana	Rw0G013710 Rw1G015340 Rw4G006780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	377
AciI	CCGC	2 cut(s)	35, 38
AclWI	GGATC	1 cut(s)	81
AcoI	YGGCCR	3 cut(s)	7, 78, 442
AfaI	GTAC	2 cut(s)	93, 512
AfiI	CCNNNNNNNGG	2 cut(s)	34, 87
AgsI	TTSAA	3 cut(s)	181, 316, 355
AjnI	CCWGG	2 cut(s)	86, 99
AluBI	AGCT	3 cut(s)	110, 312, 373
AluI	AGCT	3 cut(s)	110, 312, 373
Alw21I	GWGCWC	1 cut(s)	424
Alw44I	GTGCAC	1 cut(s)	420
AlwI	GGATC	1 cut(s)	81
AoxI	GGCC	4 cut(s)	7, 12, 78, 442
ApaLI	GTGCAC	1 cut(s)	420
ApeKI	GCWGC	3 cut(s)	281, 305, 401
AspS9I	GGNCC	1 cut(s)	12
AsuC2I	CCSGG	1 cut(s)	11
AsuHPI	GGTGA	2 cut(s)	178, 592
AsuNHI	GCTAGC	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	424
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	3 cut(s)	268, 317, 413
BceAI	ACGGC	2 cut(s)	429, 529
BciT130I	CCWGG	2 cut(s)	88, 101
BcnI	CCSGG	1 cut(s)	11
BfaI	CTAG	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	377
BisI	GCNGC	5 cut(s)	36, 39, 282, 306, 402
BlsI	GCNGC	5 cut(s)	37, 40, 283, 307, 403
Bme1390I	CCNGG	3 cut(s)	11, 88, 101
BmgT120I	GGNCC	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	265
BmrFI	CCNGG	3 cut(s)	11, 88, 101
BmsI	GCATC	2 cut(s)	205, 293
BmtI	GCTAGC	1 cut(s)	114
BpuMI	CCSGG	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	87
BsaWI	WCCGGW	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 87
Bse1I	ACTGG	1 cut(s)	508
Bse3DI	GCAATG	1 cut(s)	114
BseBI	CCWGG	2 cut(s)	88, 101
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	3 cut(s)	284, 519, 559
BseLI	CCNNNNNNNGG	2 cut(s)	34, 87
BseMI	GCAATG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	508
BseSI	GKGCMC	1 cut(s)	424
BseXI	GCAGC	3 cut(s)	268, 317, 413
BshFI	GGCC	4 cut(s)	9, 14, 80, 444
BsiHKAI	GWGCWC	1 cut(s)	424
BsiSI	CCGG	2 cut(s)	10, 288
BslI	CCNNNNNNNGG	2 cut(s)	34, 87
BsnI	GGCC	4 cut(s)	9, 14, 80, 444
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp143I	GATC	1 cut(s)	73
BspACI	CCGC	2 cut(s)	35, 38
BspANI	GGCC	4 cut(s)	9, 14, 80, 444
BspLI	GGNNCC	1 cut(s)	265
BspMI	ACCTGC	1 cut(s)	377
BspOI	GCTAGC	1 cut(s)	114
BspPI	GGATC	1 cut(s)	81
BspQI	GCTCTTC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	508
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	1 cut(s)	73
Bst2UI	CCWGG	2 cut(s)	88, 101
Bst4CI	ACNGT	1 cut(s)	342
Bst6I	CTCTTC	2 cut(s)	164, 242
BstC8I	GCNNGC	4 cut(s)	7, 112, 310, 442
BstF5I	GGATG	3 cut(s)	284, 519, 559
BstKTI	GATC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 116, 272, 281
BstNI	CCWGG	2 cut(s)	88, 101
BstSCI	CCNGG	3 cut(s)	9, 86, 99
BstSLI	GKGCMC	1 cut(s)	424
BstV1I	GCAGC	3 cut(s)	268, 317, 413
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	4 cut(s)	9, 14, 80, 444
BtsCI	GGATG	3 cut(s)	284, 519, 559
BveI	ACCTGC	1 cut(s)	377
Cac8I	GCNNGC	4 cut(s)	7, 112, 310, 442
Cfr13I	GGNCC	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	92, 511
CviAII	CATG	2 cut(s)	132, 320
CviQI	GTAC	2 cut(s)	92, 511
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
EaeI	YGGCCR	3 cut(s)	7, 78, 442
Eam1104I	CTCTTC	2 cut(s)	164, 242
EarI	CTCTTC	2 cut(s)	164, 242
EcoRII	CCWGG	2 cut(s)	86, 99
FaeI	CATG	2 cut(s)	135, 323
FaiI	YATR	8 cut(s)	133, 224, 279, 294, 321, 427, 471, 561
FatI	CATG	2 cut(s)	131, 319
Fnu4HI	GCNGC	5 cut(s)	36, 39, 282, 306, 402
FokI	GGATG	3 cut(s)	271, 506, 566
Fsp4HI	GCNGC	5 cut(s)	36, 39, 282, 306, 402
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	5 cut(s)	36, 39, 282, 306, 402
HaeIII	GGCC	4 cut(s)	9, 14, 80, 444
HapII	CCGG	2 cut(s)	10, 288
Hin1II	CATG	2 cut(s)	135, 323
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HindIII	AAGCTT	1 cut(s)	310
HinfI	GANTC	4 cut(s)	24, 83, 316, 597
HpaI	GTTAAC	1 cut(s)	487
HpaII	CCGG	2 cut(s)	10, 288
HphI	GGTGA	2 cut(s)	178, 592
Hpy166II	GTNNAC	2 cut(s)	422, 487
Hpy188I	TCNGA	2 cut(s)	258, 462
Hpy188III	TCNNGA	2 cut(s)	503, 594
Hpy8I	GTNNAC	2 cut(s)	422, 487
Hpy99I	CGWCG	1 cut(s)	24
HpyAV	CCTTC	2 cut(s)	133, 263
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4V	TGCA	4 cut(s)	284, 323, 386, 422
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 116, 272, 281
Hsp92II	CATG	2 cut(s)	135, 323
KspAI	GTTAAC	1 cut(s)	487
Kzo9I	GATC	1 cut(s)	73
LguI	GCTCTTC	1 cut(s)	242
LmnI	GCTCC	2 cut(s)	263, 569
Lsp1109I	GCAGC	3 cut(s)	268, 317, 413
LweI	GCATC	2 cut(s)	205, 293
MaeI	CTAG	1 cut(s)	111
MaeIII	GTNAC	4 cut(s)	49, 342, 449, 586
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	3 cut(s)	118, 181, 259
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	1 cut(s)	187
MlyI	GAGTC	1 cut(s)	33
MnlI	CCTC	4 cut(s)	156, 165, 358, 533
MseI	TTAA	2 cut(s)	191, 486
MspI	CCGG	2 cut(s)	10, 288
MspR9I	CCNGG	3 cut(s)	11, 88, 101
MvaI	CCWGG	2 cut(s)	88, 101
MwoI	GCNNNNNNNGC	4 cut(s)	11, 116, 272, 281
NciI	CCSGG	1 cut(s)	11
NdeII	GATC	1 cut(s)	73
NheI	GCTAGC	1 cut(s)	110
NlaIII	CATG	2 cut(s)	135, 323
NlaIV	GGNNCC	1 cut(s)	265
NmuCI	GTSAC	2 cut(s)	449, 586
PciSI	GCTCTTC	1 cut(s)	242
PfeI	GAWTC	3 cut(s)	83, 316, 597
PkrI	GCNGC	5 cut(s)	37, 40, 283, 307, 403
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
Psp6I	CCWGG	2 cut(s)	86, 99
PspGI	CCWGG	2 cut(s)	86, 99
PspN4I	GGNNCC	1 cut(s)	265
PspPI	GGNCC	1 cut(s)	12
PsuI	RGATCY	1 cut(s)	73
RsaI	GTAC	2 cut(s)	93, 512
RsaNI	GTAC	2 cut(s)	92, 511
SapI	GCTCTTC	1 cut(s)	242
SaqAI	TTAA	2 cut(s)	191, 486
SatI	GCNGC	5 cut(s)	36, 39, 282, 306, 402
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	1 cut(s)	12
SchI	GAGTC	1 cut(s)	33
ScrFI	CCNGG	3 cut(s)	11, 88, 101
SduI	GDGCHC	1 cut(s)	424
SetI	ASST	8 cut(s)	112, 125, 314, 375, 384, 391, 586, 605
SfaNI	GCATC	2 cut(s)	205, 293
Sse9I	AATT	1 cut(s)	187
SsiI	CCGC	2 cut(s)	35, 38
SspMI	CTAG	1 cut(s)	111
StyD4I	CCNGG	3 cut(s)	9, 86, 99
TaaI	ACNGT	1 cut(s)	342
TasI	AATT	1 cut(s)	187
TauI	GCSGC	2 cut(s)	38, 41
TfiI	GAWTC	3 cut(s)	83, 316, 597
Tru1I	TTAA	2 cut(s)	191, 486
Tru9I	TTAA	2 cut(s)	191, 486
TseFI	GTSAC	2 cut(s)	449, 586
TseI	GCWGC	3 cut(s)	281, 305, 401
Tsp45I	GTSAC	2 cut(s)	449, 586
TspDTI	ATGAA	1 cut(s)	312
TspGWI	ACGGA	2 cut(s)	68, 566
VneI	GTGCAC	1 cut(s)	420
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.