Rw4G006780

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
14280791 .. 14282011
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G006780.1

Sequence Viewer

Length: 396 bp
ATGAATCATAGACCGATTGATTCCAGAAAATGGAAGAACCTTCTGATTGGAGCCAACTTTGCTTATGCTGCATCCGGTTATGATGAAAAGGCAGCAAGCTTGAATCATGCAATCTCTTTGCCCCAACAGTTACAATACTTCAAGGAATATGAGGGTAAGCTAAACAAGGTTGCAGGTAGTAAGAAAGCAGCAACAATCATCAATGGTGCACTATACTTATTGAGTGCTGGCCATAGTGACTTCGTTCAGAACTACTATGTCAATCCTTTTGTTAACGAACTCTACACTCCTGACCAGTACGGCAACATCCTCGTTTGTGCTTTCACACGCTTTATTACGGTACCTTCTCAAATTGCCACTTCTGTTCATCCTACTTTAATGAAGAATCTACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

131

Amino Acids

14.64

Weight (kDa)

9.19

Isoelectric Point (pI)

25.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 164
Acc65I GGTACC 1 cut(s) 340
AccB1I GGYRCC 1 cut(s) 340
AccB7I CCANNNNNTGG 1 cut(s) 30
AcoI YGGCCR 1 cut(s) 229
AfaI GTAC 2 cut(s) 299, 342
AfiI CCNNNNNNNGG 1 cut(s) 30
AgsI TTSAA 2 cut(s) 103, 142
AluBI AGCT 2 cut(s) 99, 160
AluI AGCT 2 cut(s) 99, 160
Alw21I GWGCWC 1 cut(s) 211
Alw44I GTGCAC 1 cut(s) 207
AoxI GGCC 1 cut(s) 229
ApaLI GTGCAC 1 cut(s) 207
ApeKI GCWGC 3 cut(s) 68, 92, 188
Asp718I GGTACC 1 cut(s) 340
BaeGI GKGCMC 1 cut(s) 211
BalI TGGCCA 1 cut(s) 231
BanI GGYRCC 1 cut(s) 340
Bbv12I GWGCWC 1 cut(s) 211
BbvI GCAGC 3 cut(s) 55, 104, 200
BceAI ACGGC 1 cut(s) 316
BcgI CGANNNNNNTGC 2 cut(s) 292, 326
BfuAI ACCTGC 1 cut(s) 164
BisI GCNGC 3 cut(s) 69, 93, 189
BlsI GCNGC 3 cut(s) 70, 94, 190
BmiI GGNNCC 2 cut(s) 52, 342
BmsI GCATC 1 cut(s) 80
BsaWI WCCGGW 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 295
BseGI GGATG 3 cut(s) 71, 306, 367
BseLI CCNNNNNNNGG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 295
BseSI GKGCMC 1 cut(s) 211
BseXI GCAGC 3 cut(s) 55, 104, 200
BshFI GGCC 1 cut(s) 231
BshNI GGYRCC 1 cut(s) 340
BsiHKAI GWGCWC 1 cut(s) 211
BsiSI CCGG 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 30
BsnI GGCC 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 211
BspANI GGCC 1 cut(s) 231
BspLI GGNNCC 2 cut(s) 52, 342
BspMI ACCTGC 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 340
BsrI ACTGG 1 cut(s) 295
Bst4CI ACNGT 2 cut(s) 129, 340
BstC8I GCNNGC 2 cut(s) 97, 229
BstF5I GGATG 3 cut(s) 71, 306, 367
BstMWI GCNNNNNNNGC 2 cut(s) 59, 68
BstSLI GKGCMC 1 cut(s) 211
BstV1I GCAGC 3 cut(s) 55, 104, 200
BsuRI GGCC 1 cut(s) 231
BtsCI GGATG 3 cut(s) 71, 306, 367
BveI ACCTGC 1 cut(s) 164
Cac8I GCNNGC 2 cut(s) 97, 229
Csp6I GTAC 2 cut(s) 298, 341
CviAII CATG 1 cut(s) 107
CviJI RGCY 4 cut(s) 53, 99, 160, 231
CviKI_1 RGCY 4 cut(s) 53, 99, 160, 231
CviQI GTAC 2 cut(s) 298, 341
EaeI YGGCCR 1 cut(s) 229
FaeI CATG 1 cut(s) 110
FaiI YATR 8 cut(s) 9, 66, 81, 108, 150, 214, 234, 258
FatI CATG 1 cut(s) 106
Fnu4HI GCNGC 3 cut(s) 69, 93, 189
FokI GGATG 3 cut(s) 58, 293, 354
Fsp4HI GCNGC 3 cut(s) 69, 93, 189
GluI GCNGC 3 cut(s) 69, 93, 189
HaeIII GGCC 1 cut(s) 231
HapII CCGG 1 cut(s) 75
Hin1II CATG 1 cut(s) 110
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 97
HinfI GANTC 4 cut(s) 4, 20, 103, 385
HpaI GTTAAC 1 cut(s) 274
HpaII CCGG 1 cut(s) 75
Hpy166II GTNNAC 2 cut(s) 209, 274
Hpy188I TCNGA 2 cut(s) 45, 249
Hpy188III TCNNGA 2 cut(s) 24, 290
Hpy8I GTNNAC 2 cut(s) 209, 274
HpyAV CCTTC 2 cut(s) 50, 354
HpyCH4III ACNGT 2 cut(s) 129, 340
HpyCH4V TGCA 4 cut(s) 71, 110, 173, 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 68
Hsp92II CATG 1 cut(s) 110
KpnI GGTACC 1 cut(s) 344
KspAI GTTAAC 1 cut(s) 274
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 6 cut(s) 37, 88, 159, 213, 303, 308
Lsp1109I GCAGC 3 cut(s) 55, 104, 200
LweI GCATC 1 cut(s) 80
MaeIII GTNAC 2 cut(s) 129, 236
MboII GAAGA 2 cut(s) 46, 394
MhlI GDGCHC 1 cut(s) 211
MlsI TGGCCA 1 cut(s) 231
MluCI AATT 1 cut(s) 351
MluNI TGGCCA 1 cut(s) 231
MnlI CCTC 2 cut(s) 145, 320
Mox20I TGGCCA 1 cut(s) 231
MscI TGGCCA 1 cut(s) 231
MseI TTAA 2 cut(s) 273, 377
Msp20I TGGCCA 1 cut(s) 231
MspI CCGG 1 cut(s) 75
MwoI GCNNNNNNNGC 2 cut(s) 59, 68
NlaIII CATG 1 cut(s) 110
NlaIV GGNNCC 2 cut(s) 52, 342
NmuCI GTSAC 1 cut(s) 236
PfeI GAWTC 4 cut(s) 4, 20, 103, 385
PflMI CCANNNNNTGG 1 cut(s) 30
PkrI GCNGC 3 cut(s) 70, 94, 190
PspN4I GGNNCC 2 cut(s) 52, 342
RsaI GTAC 2 cut(s) 299, 342
RsaNI GTAC 2 cut(s) 298, 341
SaqAI TTAA 2 cut(s) 273, 377
SatI GCNGC 3 cut(s) 69, 93, 189
SduI GDGCHC 1 cut(s) 211
SetI ASST 6 cut(s) 42, 101, 162, 171, 178, 346
SfaNI GCATC 1 cut(s) 80
Sse9I AATT 1 cut(s) 351
TaaI ACNGT 2 cut(s) 129, 340
TaqII GACCGA 1 cut(s) 28
TasI AATT 1 cut(s) 351
TfiI GAWTC 4 cut(s) 4, 20, 103, 385
Tru1I TTAA 2 cut(s) 273, 377
Tru9I TTAA 2 cut(s) 273, 377
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 3 cut(s) 68, 92, 188
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 4 cut(s) 17, 99, 356, 395
Van91I CCANNNNNTGG 1 cut(s) 30
VneI GTGCAC 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.