Rh2BG182500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0017026
Physical Location & Seq
Reverse (-)
16247621 .. 16249598
1978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG182500.1

Sequence Viewer

Length: 267 bp
ATGGAAAGTGTTGCAGGGGTGGATCTGACCGATTCCAGGGTACTATTGTCCGCAAAAGCTAGCATTGGTATTGAGAAATCAATCTTGTTCTCTCTTGCTTGCTACCTTCTTCAGTTCTTCTCATGGATAAGGAGGCTGAAGAGGGATTTCAATCTCAATTTAAGGAAAGGTTGCCTTTCGGAGACTTCATATTGTGGTTTAGCTGCTCTTTTAGCTCTTCTTCCTGATCGGTTCTTGAATCACTCGATTTGGCTTTCCATTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.88

Weight (kDa)

8.99

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 51
AclWI GGATC 1 cut(s) 30
AcuI CTGAAG 2 cut(s) 95, 158
AfaI GTAC 1 cut(s) 42
AfiI CCNNNNNNNGG 1 cut(s) 36
AgsI TTSAA 2 cut(s) 151, 238
AjnI CCWGG 1 cut(s) 35
AluBI AGCT 4 cut(s) 59, 203, 215, 264
AluI AGCT 4 cut(s) 59, 203, 215, 264
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 203
AsuNHI GCTAGC 1 cut(s) 59
BaeI ACNNNNGTAYC 2 cut(s) 32, 65
BbvI GCAGC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 2 cut(s) 60, 265
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme1390I CCNGG 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 37
BmtI GCTAGC 1 cut(s) 63
BsaBI GATNNNNATC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 36
Bsc4I CCNNNNNNNGG 1 cut(s) 36
Bse8I GATNNNNATC 1 cut(s) 150
BseBI CCWGG 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 36
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 36
BsmAI GTCTC 1 cut(s) 176
Bsp143I GATC 2 cut(s) 22, 226
BspACI CCGC 1 cut(s) 51
BspOI GCTAGC 1 cut(s) 63
BspPI GGATC 1 cut(s) 30
BspQI GCTCTTC 1 cut(s) 222
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 2 cut(s) 22, 226
Bst2UI CCWGG 1 cut(s) 37
Bst6I CTCTTC 2 cut(s) 134, 222
BstC8I GCNNGC 2 cut(s) 61, 100
BstKTI GATC 2 cut(s) 25, 229
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 2 cut(s) 22, 226
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstNI CCWGG 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 35
BstV1I GCAGC 1 cut(s) 190
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
Cac8I GCNNGC 2 cut(s) 61, 100
Csp6I GTAC 1 cut(s) 41
CviAII CATG 1 cut(s) 123
CviJI RGCY 6 cut(s) 59, 136, 203, 215, 253, 264
CviKI_1 RGCY 6 cut(s) 59, 136, 203, 215, 253, 264
CviQI GTAC 1 cut(s) 41
DpnI GATC 2 cut(s) 24, 228
DpnII GATC 2 cut(s) 22, 226
Eam1104I CTCTTC 2 cut(s) 134, 222
EarI CTCTTC 2 cut(s) 134, 222
Eco57I CTGAAG 2 cut(s) 95, 158
EcoRII CCWGG 1 cut(s) 35
FaeI CATG 1 cut(s) 126
FaiI YATR 2 cut(s) 124, 190
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FatI CATG 1 cut(s) 122
Fnu4HI GCNGC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 2 cut(s) 60, 265
GluI GCNGC 1 cut(s) 204
Hin1II CATG 1 cut(s) 126
HinfI GANTC 2 cut(s) 32, 238
Hpy188I TCNGA 2 cut(s) 27, 181
Hpy188III TCNNGA 2 cut(s) 224, 235
HpyAV CCTTC 1 cut(s) 116
HpyCH4V TGCA 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
Hsp92II CATG 1 cut(s) 126
Kzo9I GATC 2 cut(s) 22, 226
LguI GCTCTTC 1 cut(s) 222
LpnPI CCDG 3 cut(s) 22, 49, 237
Lsp1109I GCAGC 1 cut(s) 190
MaeI CTAG 2 cut(s) 60, 265
MalI GATC 2 cut(s) 24, 228
MboI GATC 2 cut(s) 22, 226
MboII GAAGA 5 cut(s) 101, 109, 151, 209, 212
MflI RGATCY 1 cut(s) 22
MluCI AATT 1 cut(s) 157
MnlI CCTC 2 cut(s) 126, 135
MseI TTAA 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 37
MvaI CCWGG 1 cut(s) 37
MwoI GCNNNNNNNGC 1 cut(s) 212
NdeII GATC 2 cut(s) 22, 226
NheI GCTAGC 1 cut(s) 59
NlaIII CATG 1 cut(s) 126
PciSI GCTCTTC 1 cut(s) 222
PfeI GAWTC 2 cut(s) 32, 238
PkrI GCNGC 1 cut(s) 205
Psp6I CCWGG 1 cut(s) 35
PspGI CCWGG 1 cut(s) 35
PsuI RGATCY 1 cut(s) 22
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 161
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 2 cut(s) 22, 226
ScrFI CCNGG 1 cut(s) 37
SetI ASST 6 cut(s) 61, 108, 172, 205, 217, 266
Sse9I AATT 1 cut(s) 157
SsiI CCGC 1 cut(s) 51
SspMI CTAG 2 cut(s) 60, 265
StyD4I CCNGG 1 cut(s) 35
TaqI TCGA 1 cut(s) 245
TaqII GACCGA 1 cut(s) 44
TasI AATT 1 cut(s) 157
TfiI GAWTC 2 cut(s) 32, 238
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TseI GCWGC 1 cut(s) 203
TspDTI ATGAA 1 cut(s) 177
XspI CTAG 2 cut(s) 60, 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.