Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0017026

Physical Location & Seq

Genomic Coordinates Forward (+)

56483700 .. 56491488

Gene Structure 7789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG366400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGACGGAAAGTGTTGTAGGGGTGGATCTGGCCGATTCCAGGGTGCTATTCCTGGCAAAAGCTAGCATTGCTACCTTCTTCTCATGGATAAGATTTTTTGTTGTTGTTTTTGTGAGGGTGAAGAGGGCTTTCAATCTCAATTTAAGGAAAGTGTTTGTGATGGTTGATGCCAATATAGACAAAGTTTTCTTTACAAGGAAGAACCTTCTGATTGGAGCCAACTTTGCTTATGCTGCATCCGGTTATGATGAAAAGGCAGCAAGCTTGAATCATGCAATCTCTTTGCCCCAACAGTTACAATACTTCAAGGAATACGAGGGTAAGCTAAACAAGGTTGCAGGTAGTAAGAAAGCAGCAACAATCATCAATGGTGCACTATACTTATTGAGTGCTGGCCATAGTGACTTCGTTCAGAACTACTATGTCAATCCTTTTGTTAATGAACTCTACACTCCTGACCAGTACGGCAACATCCTCGTTTGTGATTTCACACGCTTTATTACGGATGTGTATGGTTTGGGAGTAAGGAAAGTAGGTGTGACATCAAGATTCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0048046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

185

Amino Acids

20.8

Weight (kDa)

9.49

Isoelectric Point (pI)

20.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017026)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000011531 RLG00000023814 RLG00000035693
rosa_multiflora	Rmu_sc0001496.1_g000020
rosa_samantha	Rh1AG181400 Rh2BG182500 Rh2BG570700 Rh3DG251100 Rh4CG006500 Rh5AG502600 Rh6AG366400
rosa_wichuraiana	Rw0G013710 Rw1G015340 Rw4G006780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	329
AclWI	GGATC	1 cut(s)	33
AcoI	YGGCCR	2 cut(s)	30, 394
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	3 cut(s)	133, 268, 307
AjnI	CCWGG	2 cut(s)	38, 51
AluBI	AGCT	3 cut(s)	62, 264, 325
AluI	AGCT	3 cut(s)	62, 264, 325
Alw21I	GWGCWC	1 cut(s)	376
Alw44I	GTGCAC	1 cut(s)	372
AlwI	GGATC	1 cut(s)	33
AoxI	GGCC	2 cut(s)	30, 394
ApaLI	GTGCAC	1 cut(s)	372
ApeKI	GCWGC	3 cut(s)	233, 257, 353
AsuHPI	GGTGA	2 cut(s)	130, 544
AsuNHI	GCTAGC	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	376
BalI	TGGCCA	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	3 cut(s)	220, 269, 365
BccI	CCATC	1 cut(s)	154
BceAI	ACGGC	1 cut(s)	481
BcgI	CGANNNNNNTGC	2 cut(s)	457, 491
BciT130I	CCWGG	2 cut(s)	40, 53
BfaI	CTAG	1 cut(s)	63
BfuAI	ACCTGC	1 cut(s)	329
BisI	GCNGC	3 cut(s)	234, 258, 354
BlsI	GCNGC	3 cut(s)	235, 259, 355
Bme1390I	CCNGG	2 cut(s)	40, 53
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	2 cut(s)	40, 53
BmsI	GCATC	2 cut(s)	157, 245
BmtI	GCTAGC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	460
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	2 cut(s)	40, 53
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	3 cut(s)	236, 471, 511
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMI	GCAATG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	460
BseSI	GKGCMC	1 cut(s)	376
BseXI	GCAGC	3 cut(s)	220, 269, 365
BshFI	GGCC	2 cut(s)	32, 396
BsiHKAI	GWGCWC	1 cut(s)	376
BsiSI	CCGG	1 cut(s)	240
BslI	CCNNNNNNNGG	1 cut(s)	39
BsnI	GGCC	2 cut(s)	32, 396
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp143I	GATC	1 cut(s)	25
BspANI	GGCC	2 cut(s)	32, 396
BspLI	GGNNCC	1 cut(s)	217
BspMI	ACCTGC	1 cut(s)	329
BspOI	GCTAGC	1 cut(s)	66
BspPI	GGATC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	460
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	1 cut(s)	25
Bst2UI	CCWGG	2 cut(s)	40, 53
Bst4CI	ACNGT	1 cut(s)	294
Bst6I	CTCTTC	1 cut(s)	116
BstC8I	GCNNGC	3 cut(s)	64, 262, 394
BstF5I	GGATG	3 cut(s)	236, 471, 511
BstKTI	GATC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 224, 233
BstNI	CCWGG	2 cut(s)	40, 53
BstSCI	CCNGG	2 cut(s)	38, 51
BstSLI	GKGCMC	1 cut(s)	376
BstV1I	GCAGC	3 cut(s)	220, 269, 365
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	2 cut(s)	32, 396
BtsCI	GGATG	3 cut(s)	236, 471, 511
BveI	ACCTGC	1 cut(s)	329
Cac8I	GCNNGC	3 cut(s)	64, 262, 394
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	2 cut(s)	84, 272
CviJI	RGCY	7 cut(s)	32, 62, 128, 218, 264, 325, 396
CviKI_1	RGCY	7 cut(s)	32, 62, 128, 218, 264, 325, 396
CviQI	GTAC	1 cut(s)	463
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
EaeI	YGGCCR	2 cut(s)	30, 394
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
EcoRII	CCWGG	2 cut(s)	38, 51
FaeI	CATG	2 cut(s)	87, 275
FaiI	YATR	9 cut(s)	85, 176, 231, 246, 273, 379, 399, 423, 513
FatI	CATG	2 cut(s)	83, 271
Fnu4HI	GCNGC	3 cut(s)	234, 258, 354
FokI	GGATG	3 cut(s)	223, 458, 518
Fsp4HI	GCNGC	3 cut(s)	234, 258, 354
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	3 cut(s)	234, 258, 354
HaeIII	GGCC	2 cut(s)	32, 396
HapII	CCGG	1 cut(s)	240
Hin1II	CATG	2 cut(s)	87, 275
HindIII	AAGCTT	1 cut(s)	262
HinfI	GANTC	3 cut(s)	35, 268, 549
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	2 cut(s)	130, 544
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188I	TCNGA	2 cut(s)	210, 414
Hpy188III	TCNNGA	2 cut(s)	455, 546
Hpy8I	GTNNAC	1 cut(s)	374
HpyAV	CCTTC	2 cut(s)	85, 215
HpyCH4III	ACNGT	1 cut(s)	294
HpyCH4V	TGCA	4 cut(s)	236, 275, 338, 374
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 224, 233
Hsp92II	CATG	2 cut(s)	87, 275
Kzo9I	GATC	1 cut(s)	25
LmnI	GCTCC	1 cut(s)	215
Lsp1109I	GCAGC	3 cut(s)	220, 269, 365
LweI	GCATC	2 cut(s)	157, 245
MaeI	CTAG	1 cut(s)	63
MaeIII	GTNAC	3 cut(s)	294, 401, 538
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MboII	GAAGA	3 cut(s)	70, 133, 211
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	376
MlsI	TGGCCA	1 cut(s)	396
MluCI	AATT	1 cut(s)	139
MluNI	TGGCCA	1 cut(s)	396
MnlI	CCTC	4 cut(s)	108, 117, 310, 485
Mox20I	TGGCCA	1 cut(s)	396
MscI	TGGCCA	1 cut(s)	396
MseI	TTAA	2 cut(s)	143, 438
Msp20I	TGGCCA	1 cut(s)	396
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	2 cut(s)	40, 53
MvaI	CCWGG	2 cut(s)	40, 53
MwoI	GCNNNNNNNGC	3 cut(s)	68, 224, 233
NdeII	GATC	1 cut(s)	25
NheI	GCTAGC	1 cut(s)	62
NlaIII	CATG	2 cut(s)	87, 275
NlaIV	GGNNCC	1 cut(s)	217
NmuCI	GTSAC	2 cut(s)	401, 538
PfeI	GAWTC	3 cut(s)	35, 268, 549
PkrI	GCNGC	3 cut(s)	235, 259, 355
Psp6I	CCWGG	2 cut(s)	38, 51
PspGI	CCWGG	2 cut(s)	38, 51
PspN4I	GGNNCC	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
SaqAI	TTAA	2 cut(s)	143, 438
SatI	GCNGC	3 cut(s)	234, 258, 354
Sau3AI	GATC	1 cut(s)	25
ScrFI	CCNGG	2 cut(s)	40, 53
SduI	GDGCHC	1 cut(s)	376
SetI	ASST	9 cut(s)	64, 77, 207, 266, 327, 336, 343, 538, 557
SfaNI	GCATC	2 cut(s)	157, 245
Sse9I	AATT	1 cut(s)	139
SspMI	CTAG	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	38, 51
TaaI	ACNGT	1 cut(s)	294
TasI	AATT	1 cut(s)	139
TfiI	GAWTC	3 cut(s)	35, 268, 549
Tru1I	TTAA	2 cut(s)	143, 438
Tru9I	TTAA	2 cut(s)	143, 438
TseFI	GTSAC	2 cut(s)	401, 538
TseI	GCWGC	3 cut(s)	233, 257, 353
Tsp45I	GTSAC	2 cut(s)	401, 538
TspDTI	ATGAA	2 cut(s)	264, 456
TspGWI	ACGGA	2 cut(s)	20, 518
VneI	GTGCAC	1 cut(s)	372
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.