Rw1G015340

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0017026
Physical Location & Seq
Reverse (-)
34223043 .. 34224951
1909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G015340.1

Sequence Viewer

Length: 453 bp
ATGAAGAAGGGAAGAAGATTGCAGCAATGGTGCGGGAGATTGGGCCTTCTGAGCTTGTTCTTGGACTCTATGATCACAGTTTTCTTTACAAGGAAGAACCTTCTGATTGGAGCGAACTTTGCTTATGCTGCATCCGGTTATGATGAAAAGGCAGCAAGCTTGAATCATGCAATCTCTTTGCCCCAACAGTTACAATACTTCAAGGAATACGAGGGTAAGCTAAACAAGGTTGCAGGTAGTAAGAAAGCAGCAACAATCATCAATGGTGCACTATACTTATTGAGTGCTGGCCGTAGTGACTTCGTTCAGAACTACTATGTCAATCCTTTTGTTAACGAACTCTACACTCCCGACCAGTACGGCGACATCCTCATTTGTGCTTTCACACACTTTATTATGGATGTGTATGGTTTGGGAGCAAGGAAAATAGGTGTGACATCAAGATTCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0048046
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

150

Amino Acids

16.84

Weight (kDa)

9.46

Isoelectric Point (pI)

22.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 224
AciI CCGC 1 cut(s) 33
AcoI YGGCCR 1 cut(s) 289
AfaI GTAC 1 cut(s) 359
AgsI TTSAA 2 cut(s) 163, 202
AluBI AGCT 3 cut(s) 54, 159, 220
AluI AGCT 3 cut(s) 54, 159, 220
Alw21I GWGCWC 1 cut(s) 271
Alw44I GTGCAC 1 cut(s) 267
AoxI GGCC 2 cut(s) 43, 289
ApaLI GTGCAC 1 cut(s) 267
ApeKI GCWGC 4 cut(s) 22, 128, 152, 248
AspS9I GGNCC 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 439
BaeGI GKGCMC 1 cut(s) 271
Bbv12I GWGCWC 1 cut(s) 271
BbvI GCAGC 4 cut(s) 34, 115, 164, 260
BceAI ACGGC 2 cut(s) 276, 376
BclI TGATCA 1 cut(s) 72
BfuAI ACCTGC 1 cut(s) 224
BisI GCNGC 4 cut(s) 23, 129, 153, 249
BlsI GCNGC 4 cut(s) 24, 130, 154, 250
BmgT120I GGNCC 1 cut(s) 43
BmsI GCATC 1 cut(s) 140
BsaWI WCCGGW 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 355
Bse3DI GCAATG 1 cut(s) 32
BseGI GGATG 3 cut(s) 131, 366, 406
BseMI GCAATG 1 cut(s) 32
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 1 cut(s) 355
BseSI GKGCMC 1 cut(s) 271
BseXI GCAGC 4 cut(s) 34, 115, 164, 260
BshFI GGCC 2 cut(s) 45, 291
BsiHKAI GWGCWC 1 cut(s) 271
BsiSI CCGG 1 cut(s) 135
BsnI GGCC 2 cut(s) 45, 291
Bsp1286I GDGCHC 1 cut(s) 271
Bsp143I GATC 1 cut(s) 72
BspACI CCGC 1 cut(s) 33
BspANI GGCC 2 cut(s) 45, 291
BspCNI CTCAG 1 cut(s) 42
BspMI ACCTGC 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 32
BsrI ACTGG 1 cut(s) 355
BssMI GATC 1 cut(s) 72
Bst4CI ACNGT 2 cut(s) 79, 189
BstC8I GCNNGC 2 cut(s) 157, 289
BstDEI CTNAG 1 cut(s) 50
BstF5I GGATG 3 cut(s) 131, 366, 406
BstKTI GATC 1 cut(s) 75
BstMBI GATC 1 cut(s) 72
BstMWI GCNNNNNNNGC 3 cut(s) 51, 119, 128
BstSLI GKGCMC 1 cut(s) 271
BstV1I GCAGC 4 cut(s) 34, 115, 164, 260
BsuRI GGCC 2 cut(s) 45, 291
BtsCI GGATG 3 cut(s) 131, 366, 406
BveI ACCTGC 1 cut(s) 224
Cac8I GCNNGC 2 cut(s) 157, 289
Cfr13I GGNCC 1 cut(s) 43
Csp6I GTAC 1 cut(s) 358
CviAII CATG 1 cut(s) 167
CviJI RGCY 5 cut(s) 45, 54, 159, 220, 291
CviKI_1 RGCY 5 cut(s) 45, 54, 159, 220, 291
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 1 cut(s) 50
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
EaeI YGGCCR 1 cut(s) 289
FaeI CATG 1 cut(s) 170
FaiI YATR 8 cut(s) 71, 126, 141, 168, 274, 318, 398, 408
FatI CATG 1 cut(s) 166
FauI CCCGC 1 cut(s) 26
FbaI TGATCA 1 cut(s) 72
Fnu4HI GCNGC 4 cut(s) 23, 129, 153, 249
FokI GGATG 3 cut(s) 118, 353, 413
Fsp4HI GCNGC 4 cut(s) 23, 129, 153, 249
GluI GCNGC 4 cut(s) 23, 129, 153, 249
HaeIII GGCC 2 cut(s) 45, 291
HapII CCGG 1 cut(s) 135
Hin1II CATG 1 cut(s) 170
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 157
HinfI GANTC 3 cut(s) 65, 163, 444
HpaI GTTAAC 1 cut(s) 334
HpaII CCGG 1 cut(s) 135
HphI GGTGA 1 cut(s) 439
Hpy166II GTNNAC 2 cut(s) 269, 334
Hpy188I TCNGA 3 cut(s) 51, 105, 309
Hpy188III TCNNGA 2 cut(s) 350, 441
Hpy8I GTNNAC 2 cut(s) 269, 334
HpyAV CCTTC 2 cut(s) 56, 110
HpyCH4III ACNGT 2 cut(s) 79, 189
HpyCH4V TGCA 5 cut(s) 22, 131, 170, 233, 269
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 119, 128
HpyF3I CTNAG 1 cut(s) 50
Hsp92II CATG 1 cut(s) 170
Ksp22I TGATCA 1 cut(s) 72
KspAI GTTAAC 1 cut(s) 334
Kzo9I GATC 1 cut(s) 72
LmnI GCTCC 2 cut(s) 110, 416
LpnPI CCDG 4 cut(s) 148, 219, 273, 368
Lsp1109I GCAGC 4 cut(s) 34, 115, 164, 260
LweI GCATC 1 cut(s) 140
MaeIII GTNAC 3 cut(s) 189, 296, 433
MalI GATC 1 cut(s) 74
MboI GATC 1 cut(s) 72
MboII GAAGA 4 cut(s) 16, 24, 27, 106
MhlI GDGCHC 1 cut(s) 271
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 2 cut(s) 205, 380
MseI TTAA 1 cut(s) 333
MspI CCGG 1 cut(s) 135
MwoI GCNNNNNNNGC 3 cut(s) 51, 119, 128
NdeII GATC 1 cut(s) 72
NlaIII CATG 1 cut(s) 170
NmuCI GTSAC 2 cut(s) 296, 433
PfeI GAWTC 2 cut(s) 163, 444
PkrI GCNGC 4 cut(s) 24, 130, 154, 250
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PspPI GGNCC 1 cut(s) 43
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 4 cut(s) 23, 129, 153, 249
Sau3AI GATC 1 cut(s) 72
Sau96I GGNCC 1 cut(s) 43
SchI GAGTC 1 cut(s) 59
SduI GDGCHC 1 cut(s) 271
SetI ASST 8 cut(s) 56, 102, 161, 222, 231, 238, 433, 452
SfaNI GCATC 1 cut(s) 140
SsiI CCGC 1 cut(s) 33
TaaI ACNGT 2 cut(s) 79, 189
TfiI GAWTC 2 cut(s) 163, 444
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseFI GTSAC 2 cut(s) 296, 433
TseI GCWGC 4 cut(s) 22, 128, 152, 248
Tsp45I GTSAC 2 cut(s) 296, 433
TspDTI ATGAA 2 cut(s) 17, 159
VneI GTGCAC 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.