Rh1AG181400

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
34335267 .. 34360352
25086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG181400.1

Sequence Viewer

Length: 723 bp
ATGGCTGGCCGGGCCGTGCGACGAGTCCTGTCTGCGGCGGCAAAAGAAGTTACGGAAAGTGTTGTAGGGGTGGATCTGGCCGATTCCAGGGTACTATTCCTGGCAAAAGCTAGCATTGCTACCTTCTTCTCATGGATAAGATTTTTTGTTGTTGTTTTTGTGAGGGTGAAGAGGGCTTTCAATCTCAATTTAAGGAAAGTGTTTGTGATGATTGATGCCAATATAGACAAAGTTTTCTTTACAAGGAAGAACCTTCTTATTGGAGCCAACTTTGCTTATGCTGCATCCGGTTATGATGAAAAGCTTGCAATCTCTTTGCCCCAACAGTTACAATACTTCAAGGAATACGAGGGTAAGCTAAACAAGGTTGCAGGTAGTAAGAAAGCAGCAACAATCATCAATGGTGCACTATACTTATTGAGTGCTGGCCATAGTGACTTCGTTCAGAACTACTATGTCAATCCTTTTGTTAACGAACTCTACACTCCTGACCAGTACGGCAACATCCTCGTTTGTGCTTTCACATGCTTTATTACGTATTTCACTTCAAACTTACCAACTAGTATTAGTATTTGCCACTCTCTCTTCATTCATCCATTTATCGGCGACGGCAACCACTCCCAACCCAGCCCATCGTCACCACCGCCATCAACTACCCCAACCATCATCTTGCATCGTTTCTACCATACGGGCATCAACAAAAAGCAATTGGTTATGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

240

Amino Acids

26.78

Weight (kDa)

9.56

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 362
AciI CCGC 3 cut(s) 35, 38, 644
AclWI GGATC 1 cut(s) 81
AcoI YGGCCR 3 cut(s) 7, 78, 427
AfaI GTAC 2 cut(s) 93, 497
AfiI CCNNNNNNNGG 3 cut(s) 34, 87, 602
AgsI TTSAA 3 cut(s) 181, 340, 549
AhlI ACTAGT 1 cut(s) 560
AjnI CCWGG 2 cut(s) 86, 99
AluBI AGCT 3 cut(s) 110, 304, 358
AluI AGCT 3 cut(s) 110, 304, 358
Alw21I GWGCWC 1 cut(s) 409
Alw44I GTGCAC 1 cut(s) 405
AlwI GGATC 1 cut(s) 81
AoxI GGCC 4 cut(s) 7, 12, 78, 427
ApaLI GTGCAC 1 cut(s) 405
ApeKI GCWGC 2 cut(s) 281, 386
AspS9I GGNCC 1 cut(s) 12
AsuC2I CCSGG 1 cut(s) 11
AsuHPI GGTGA 2 cut(s) 178, 630
AsuNHI GCTAGC 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 409
BalI TGGCCA 1 cut(s) 429
Bbv12I GWGCWC 1 cut(s) 409
BbvI GCAGC 2 cut(s) 268, 398
BccI CCATC 3 cut(s) 640, 655, 671
BceAI ACGGC 2 cut(s) 514, 625
BcgI CGANNNNNNTGC 2 cut(s) 490, 524
BciT130I CCWGG 2 cut(s) 88, 101
BcnI CCSGG 1 cut(s) 11
BcuI ACTAGT 1 cut(s) 560
BfaI CTAG 2 cut(s) 111, 561
BfuAI ACCTGC 1 cut(s) 362
BisI GCNGC 4 cut(s) 36, 39, 282, 387
BlsI GCNGC 4 cut(s) 37, 40, 283, 388
Bme1390I CCNGG 3 cut(s) 11, 88, 101
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 1 cut(s) 265
BmrFI CCNGG 3 cut(s) 11, 88, 101
BmsI GCATC 4 cut(s) 205, 293, 682, 702
BmtI GCTAGC 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 11
BsaAI YACGTR 1 cut(s) 537
BsaJI CCNNGG 1 cut(s) 87
BsaWI WCCGGW 1 cut(s) 287
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 87, 602
Bse1I ACTGG 1 cut(s) 493
Bse3DI GCAATG 1 cut(s) 114
BseBI CCWGG 2 cut(s) 88, 101
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 3 cut(s) 284, 504, 592
BseLI CCNNNNNNNGG 3 cut(s) 34, 87, 602
BseMI GCAATG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 493
BseSI GKGCMC 1 cut(s) 409
BseXI GCAGC 2 cut(s) 268, 398
BseYI CCCAGC 1 cut(s) 626
BshFI GGCC 4 cut(s) 9, 14, 80, 429
BsiHKAI GWGCWC 1 cut(s) 409
BsiSI CCGG 2 cut(s) 10, 288
BslI CCNNNNNNNGG 3 cut(s) 34, 87, 602
BsnI GGCC 4 cut(s) 9, 14, 80, 429
Bsp1286I GDGCHC 1 cut(s) 409
Bsp143I GATC 1 cut(s) 73
BspACI CCGC 3 cut(s) 35, 38, 644
BspANI GGCC 4 cut(s) 9, 14, 80, 429
BspLI GGNNCC 1 cut(s) 265
BspMI ACCTGC 1 cut(s) 362
BspOI GCTAGC 1 cut(s) 114
BspPI GGATC 1 cut(s) 81
BsrDI GCAATG 1 cut(s) 114
BsrI ACTGG 1 cut(s) 493
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 1 cut(s) 73
Bst2UI CCWGG 2 cut(s) 88, 101
Bst4CI ACNGT 1 cut(s) 327
Bst6I CTCTTC 2 cut(s) 164, 590
BstBAI YACGTR 1 cut(s) 537
BstC8I GCNNGC 4 cut(s) 7, 112, 306, 427
BstF5I GGATG 3 cut(s) 284, 504, 592
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 4 cut(s) 11, 116, 272, 281
BstNI CCWGG 2 cut(s) 88, 101
BstNSI RCATGY 1 cut(s) 528
BstSCI CCNGG 3 cut(s) 9, 86, 99
BstSLI GKGCMC 1 cut(s) 409
BstSNI TACGTA 1 cut(s) 537
BstV1I GCAGC 2 cut(s) 268, 398
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 4 cut(s) 9, 14, 80, 429
BtsCI GGATG 3 cut(s) 284, 504, 592
BveI ACCTGC 1 cut(s) 362
Cac8I GCNNGC 4 cut(s) 7, 112, 306, 427
Cfr13I GGNCC 1 cut(s) 12
Csp6I GTAC 2 cut(s) 92, 496
CviAII CATG 2 cut(s) 132, 525
CviQI GTAC 2 cut(s) 92, 496
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
EaeI YGGCCR 3 cut(s) 7, 78, 427
Eam1104I CTCTTC 2 cut(s) 164, 590
EarI CTCTTC 2 cut(s) 164, 590
Eco105I TACGTA 1 cut(s) 537
EcoRII CCWGG 2 cut(s) 86, 99
FaeI CATG 2 cut(s) 135, 528
FatI CATG 2 cut(s) 131, 524
Fnu4HI GCNGC 4 cut(s) 36, 39, 282, 387
FokI GGATG 3 cut(s) 271, 491, 579
Fsp4HI GCNGC 4 cut(s) 36, 39, 282, 387
FspBI CTAG 2 cut(s) 111, 561
GluI GCNGC 4 cut(s) 36, 39, 282, 387
GsaI CCCAGC 1 cut(s) 630
HaeIII GGCC 4 cut(s) 9, 14, 80, 429
HapII CCGG 2 cut(s) 10, 288
Hin1II CATG 2 cut(s) 135, 528
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 2 cut(s) 24, 83
HpaI GTTAAC 1 cut(s) 472
HpaII CCGG 2 cut(s) 10, 288
HphI GGTGA 2 cut(s) 178, 630
Hpy166II GTNNAC 2 cut(s) 407, 472
Hpy188I TCNGA 1 cut(s) 447
Hpy188III TCNNGA 1 cut(s) 488
Hpy8I GTNNAC 2 cut(s) 407, 472
Hpy99I CGWCG 2 cut(s) 24, 611
HpyAV CCTTC 2 cut(s) 133, 263
HpyCH4III ACNGT 1 cut(s) 327
HpyCH4IV ACGT 1 cut(s) 536
HpyCH4V TGCA 5 cut(s) 284, 308, 371, 407, 673
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 116, 272, 281
HpySE526I ACGT 1 cut(s) 536
Hsp92II CATG 2 cut(s) 135, 528
KspAI GTTAAC 1 cut(s) 472
Kzo9I GATC 1 cut(s) 73
LmnI GCTCC 1 cut(s) 263
Lsp1109I GCAGC 2 cut(s) 268, 398
LweI GCATC 4 cut(s) 205, 293, 682, 702
MaeI CTAG 2 cut(s) 111, 561
MaeII ACGT 1 cut(s) 536
MaeIII GTNAC 4 cut(s) 49, 327, 434, 636
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 4 cut(s) 118, 181, 259, 577
MfeI CAATTG 1 cut(s) 707
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 409
MlsI TGGCCA 1 cut(s) 429
MluCI AATT 2 cut(s) 187, 707
MluNI TGGCCA 1 cut(s) 429
MlyI GAGTC 1 cut(s) 33
MnlI CCTC 4 cut(s) 156, 165, 343, 518
Mox20I TGGCCA 1 cut(s) 429
MscI TGGCCA 1 cut(s) 429
MseI TTAA 3 cut(s) 191, 471, 721
Msp20I TGGCCA 1 cut(s) 429
MspI CCGG 2 cut(s) 10, 288
MspR9I CCNGG 3 cut(s) 11, 88, 101
MunI CAATTG 1 cut(s) 707
MvaI CCWGG 2 cut(s) 88, 101
MwoI GCNNNNNNNGC 4 cut(s) 11, 116, 272, 281
NciI CCSGG 1 cut(s) 11
NdeII GATC 1 cut(s) 73
NheI GCTAGC 1 cut(s) 110
NlaIII CATG 2 cut(s) 135, 528
NlaIV GGNNCC 1 cut(s) 265
NmuCI GTSAC 2 cut(s) 434, 636
NspI RCATGY 1 cut(s) 528
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 4 cut(s) 37, 40, 283, 388
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
Ppu21I YACGTR 1 cut(s) 537
Psp6I CCWGG 2 cut(s) 86, 99
PspFI CCCAGC 1 cut(s) 626
PspGI CCWGG 2 cut(s) 86, 99
PspN4I GGNNCC 1 cut(s) 265
PspPI GGNCC 1 cut(s) 12
PsuI RGATCY 1 cut(s) 73
RsaI GTAC 2 cut(s) 93, 497
RsaNI GTAC 2 cut(s) 92, 496
SaqAI TTAA 3 cut(s) 191, 471, 721
SatI GCNGC 4 cut(s) 36, 39, 282, 387
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 1 cut(s) 12
SchI GAGTC 1 cut(s) 33
ScrFI CCNGG 3 cut(s) 11, 88, 101
SduI GDGCHC 1 cut(s) 409
SetI ASST 8 cut(s) 112, 125, 255, 306, 360, 369, 376, 539
SfaNI GCATC 4 cut(s) 205, 293, 682, 702
SnaBI TACGTA 1 cut(s) 537
SpeI ACTAGT 1 cut(s) 560
Sse9I AATT 2 cut(s) 187, 707
SsiI CCGC 3 cut(s) 35, 38, 644
SspMI CTAG 2 cut(s) 111, 561
StyD4I CCNGG 3 cut(s) 9, 86, 99
TaaI ACNGT 1 cut(s) 327
TaiI ACGT 1 cut(s) 539
TasI AATT 2 cut(s) 187, 707
TauI GCSGC 2 cut(s) 38, 41
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 3 cut(s) 191, 471, 721
Tru9I TTAA 3 cut(s) 191, 471, 721
TseFI GTSAC 2 cut(s) 434, 636
TseI GCWGC 2 cut(s) 281, 386
Tsp45I GTSAC 2 cut(s) 434, 636
TspDTI ATGAA 3 cut(s) 312, 577, 581
TspGWI ACGGA 1 cut(s) 68
VneI GTGCAC 1 cut(s) 405
XceI RCATGY 1 cut(s) 528
XspI CTAG 2 cut(s) 111, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.