Rh2BG570700

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0017026
Physical Location & Seq
Reverse (-)
78634977 .. 78639367
4391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG570700.1

Sequence Viewer

Length: 384 bp
ATGATCACAGTTTTCTTTACAAGGAAGAACCTTCTGATTGGAGCCAACTTTGCTTATGCTGCATCCGGTTATGATGAAAAGGCAGCAAGCTTGAATCATGCAATCTCTTTGCCCCAACAGTTACAATACTTCAAGGAATACGAGGGTAAGCTAAACAAGGTTGCAGGTAGTAAGAAAGCAGCAACAATCATCAATGGTGCACTATACTTATTGAGCGCTGGCCATAGTGACTTCGTTCAGAACTACTATGTCAATCCTTTTGTTAACGAACTCTACACTCCTGACCAGTACGGCAACATCCTCGTTTGTGCTTTCACACGCTTTATTACGGATGTGTATGGTTTGGGAGTAAGGAAAATAGGTGTGACATCAAGATTCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0048046
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

127

Amino Acids

14.14

Weight (kDa)

9.19

Isoelectric Point (pI)

16.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 155
AcoI YGGCCR 1 cut(s) 220
AfaI GTAC 1 cut(s) 290
AfeI AGCGCT 1 cut(s) 217
AgsI TTSAA 2 cut(s) 94, 133
AluBI AGCT 2 cut(s) 90, 151
AluI AGCT 2 cut(s) 90, 151
Alw21I GWGCWC 1 cut(s) 202
Alw44I GTGCAC 1 cut(s) 198
Aor51HI AGCGCT 1 cut(s) 217
AoxI GGCC 1 cut(s) 220
ApaLI GTGCAC 1 cut(s) 198
ApeKI GCWGC 3 cut(s) 59, 83, 179
AspLEI GCGC 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 370
BaeGI GKGCMC 1 cut(s) 202
BalI TGGCCA 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 3 cut(s) 46, 95, 191
BceAI ACGGC 1 cut(s) 307
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BclI TGATCA 1 cut(s) 3
BfoI RGCGCY 1 cut(s) 219
BfuAI ACCTGC 1 cut(s) 155
BisI GCNGC 3 cut(s) 60, 84, 180
BlsI GCNGC 3 cut(s) 61, 85, 181
BmiI GGNNCC 1 cut(s) 43
BmsI GCATC 1 cut(s) 71
BsaWI WCCGGW 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 286
BseGI GGATG 3 cut(s) 62, 297, 337
BseNI ACTGG 1 cut(s) 286
BseSI GKGCMC 1 cut(s) 202
BseXI GCAGC 3 cut(s) 46, 95, 191
BshFI GGCC 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 202
BsiSI CCGG 1 cut(s) 66
BsnI GGCC 1 cut(s) 222
Bsp1286I GDGCHC 1 cut(s) 202
Bsp143I GATC 1 cut(s) 3
BspANI GGCC 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 43
BspMI ACCTGC 1 cut(s) 155
BsrI ACTGG 1 cut(s) 286
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 2 cut(s) 10, 120
BstC8I GCNNGC 2 cut(s) 88, 220
BstF5I GGATG 3 cut(s) 62, 297, 337
BstH2I RGCGCY 1 cut(s) 219
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 2 cut(s) 50, 59
BstSLI GKGCMC 1 cut(s) 202
BstV1I GCAGC 3 cut(s) 46, 95, 191
BsuRI GGCC 1 cut(s) 222
BtsCI GGATG 3 cut(s) 62, 297, 337
BveI ACCTGC 1 cut(s) 155
Cac8I GCNNGC 2 cut(s) 88, 220
CfoI GCGC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 289
CviAII CATG 1 cut(s) 98
CviJI RGCY 4 cut(s) 44, 90, 151, 222
CviKI_1 RGCY 4 cut(s) 44, 90, 151, 222
CviQI GTAC 1 cut(s) 289
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
EaeI YGGCCR 1 cut(s) 220
Eco47III AGCGCT 1 cut(s) 217
FaeI CATG 1 cut(s) 101
FaiI YATR 7 cut(s) 57, 72, 99, 205, 225, 249, 339
FatI CATG 1 cut(s) 97
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 3 cut(s) 60, 84, 180
FokI GGATG 3 cut(s) 49, 284, 344
Fsp4HI GCNGC 3 cut(s) 60, 84, 180
GlaI GCGC 1 cut(s) 217
GluI GCNGC 3 cut(s) 60, 84, 180
HaeII RGCGCY 1 cut(s) 219
HaeIII GGCC 1 cut(s) 222
HapII CCGG 1 cut(s) 66
HhaI GCGC 1 cut(s) 218
Hin1II CATG 1 cut(s) 101
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HindIII AAGCTT 1 cut(s) 88
HinfI GANTC 2 cut(s) 94, 375
HpaI GTTAAC 1 cut(s) 265
HpaII CCGG 1 cut(s) 66
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 2 cut(s) 200, 265
Hpy188I TCNGA 2 cut(s) 36, 240
Hpy188III TCNNGA 2 cut(s) 281, 372
Hpy8I GTNNAC 2 cut(s) 200, 265
HpyAV CCTTC 1 cut(s) 41
HpyCH4III ACNGT 2 cut(s) 10, 120
HpyCH4V TGCA 4 cut(s) 62, 101, 164, 200
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 59
Hsp92II CATG 1 cut(s) 101
HspAI GCGC 1 cut(s) 216
Ksp22I TGATCA 1 cut(s) 3
KspAI GTTAAC 1 cut(s) 265
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 5 cut(s) 79, 150, 204, 294, 299
Lsp1109I GCAGC 3 cut(s) 46, 95, 191
LweI GCATC 1 cut(s) 71
MaeIII GTNAC 3 cut(s) 120, 227, 364
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 202
MlsI TGGCCA 1 cut(s) 222
MluNI TGGCCA 1 cut(s) 222
MnlI CCTC 2 cut(s) 136, 311
Mox20I TGGCCA 1 cut(s) 222
MscI TGGCCA 1 cut(s) 222
MseI TTAA 1 cut(s) 264
Msp20I TGGCCA 1 cut(s) 222
MspI CCGG 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 50, 59
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 101
NlaIV GGNNCC 1 cut(s) 43
NmuCI GTSAC 2 cut(s) 227, 364
PfeI GAWTC 2 cut(s) 94, 375
PkrI GCNGC 3 cut(s) 61, 85, 181
PspN4I GGNNCC 1 cut(s) 43
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 3 cut(s) 60, 84, 180
Sau3AI GATC 1 cut(s) 3
SduI GDGCHC 1 cut(s) 202
SetI ASST 7 cut(s) 33, 92, 153, 162, 169, 364, 383
SfaNI GCATC 1 cut(s) 71
TaaI ACNGT 2 cut(s) 10, 120
TfiI GAWTC 2 cut(s) 94, 375
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TseFI GTSAC 2 cut(s) 227, 364
TseI GCWGC 3 cut(s) 59, 83, 179
Tsp45I GTSAC 2 cut(s) 227, 364
TspDTI ATGAA 1 cut(s) 90
TspGWI ACGGA 1 cut(s) 344
VneI GTGCAC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.