Rh5AG502600

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0017026
Physical Location & Seq
Reverse (-)
85041163 .. 85044624
3462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG502600.1

Sequence Viewer

Length: 405 bp
ATGACAGTGTTTTTGTTTTATCATCTGGTTTATGCATCAGGGAAGAACCTTCTTATTGGAGCCAACTTTGCTTATGCTGCATCCGGTTATGATGAAAAGGCAGCAAGCTTGAATCATGCAATCTCTTTGGCCCAACAGTTACAATACTTCAAGGAATACGAGGGTAAGCTAAACAAGGTTGCAGGTAGTAAGAAAGCAGCAACAATCATCAATGGTGCACTATACTTATTGAGTGCTGGCCATAGTGACTTCGTTCAGAACTACTATGTCAATCCTTTTGTTAACGAACTCTACACTCCTGACCAGTACGGCAACATCCTCGTTTGTGCTTTCACACGCTTTATTACGGTACCTTCTCAAATTGCCACTTCTGTTAATCCTACTTTAATGAAGAATCTACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0048046
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

134

Amino Acids

14.8

Weight (kDa)

8.61

Isoelectric Point (pI)

21.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 173
Acc65I GGTACC 1 cut(s) 349
AccB1I GGYRCC 1 cut(s) 349
AcoI YGGCCR 1 cut(s) 238
AfaI GTAC 2 cut(s) 308, 351
AgsI TTSAA 2 cut(s) 112, 151
AluBI AGCT 2 cut(s) 108, 169
AluI AGCT 2 cut(s) 108, 169
Alw21I GWGCWC 1 cut(s) 220
Alw44I GTGCAC 1 cut(s) 216
AoxI GGCC 2 cut(s) 129, 238
ApaLI GTGCAC 1 cut(s) 216
ApeKI GCWGC 3 cut(s) 77, 101, 197
ArsI GACNNNNNNTTYG 1 cut(s) 27
Asp718I GGTACC 1 cut(s) 349
AspS9I GGNCC 1 cut(s) 130
BaeGI GKGCMC 1 cut(s) 220
BalI TGGCCA 1 cut(s) 240
BanI GGYRCC 1 cut(s) 349
Bbv12I GWGCWC 1 cut(s) 220
BbvI GCAGC 3 cut(s) 64, 113, 209
BceAI ACGGC 1 cut(s) 325
BcgI CGANNNNNNTGC 2 cut(s) 301, 335
BfuAI ACCTGC 1 cut(s) 173
BisI GCNGC 3 cut(s) 78, 102, 198
BlsI GCNGC 3 cut(s) 79, 103, 199
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 2 cut(s) 61, 351
BmsI GCATC 2 cut(s) 44, 89
BsaWI WCCGGW 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 304
BseGI GGATG 2 cut(s) 80, 315
BseNI ACTGG 1 cut(s) 304
BseSI GKGCMC 1 cut(s) 220
BseXI GCAGC 3 cut(s) 64, 113, 209
BshFI GGCC 2 cut(s) 131, 240
BshNI GGYRCC 1 cut(s) 349
BsiHKAI GWGCWC 1 cut(s) 220
BsiSI CCGG 1 cut(s) 84
BsnI GGCC 2 cut(s) 131, 240
Bsp1286I GDGCHC 1 cut(s) 220
BspANI GGCC 2 cut(s) 131, 240
BspLI GGNNCC 2 cut(s) 61, 351
BspMI ACCTGC 1 cut(s) 173
BspT107I GGYRCC 1 cut(s) 349
BsrI ACTGG 1 cut(s) 304
Bst4CI ACNGT 3 cut(s) 7, 138, 349
BstC8I GCNNGC 2 cut(s) 106, 238
BstF5I GGATG 2 cut(s) 80, 315
BstMWI GCNNNNNNNGC 2 cut(s) 68, 77
BstSLI GKGCMC 1 cut(s) 220
BstV1I GCAGC 3 cut(s) 64, 113, 209
BsuRI GGCC 2 cut(s) 131, 240
BtsCI GGATG 2 cut(s) 80, 315
BtsIMutI CAGTG 1 cut(s) 12
BveI ACCTGC 1 cut(s) 173
Cac8I GCNNGC 2 cut(s) 106, 238
Cfr13I GGNCC 1 cut(s) 130
Csp6I GTAC 2 cut(s) 307, 350
CviAII CATG 1 cut(s) 116
CviJI RGCY 5 cut(s) 62, 108, 131, 169, 240
CviKI_1 RGCY 5 cut(s) 62, 108, 131, 169, 240
CviQI GTAC 2 cut(s) 307, 350
EaeI YGGCCR 1 cut(s) 238
EcoT22I ATGCAT 1 cut(s) 37
FaeI CATG 1 cut(s) 119
FaiI YATR 7 cut(s) 33, 75, 90, 117, 223, 243, 267
FatI CATG 1 cut(s) 115
Fnu4HI GCNGC 3 cut(s) 78, 102, 198
FokI GGATG 2 cut(s) 67, 302
Fsp4HI GCNGC 3 cut(s) 78, 102, 198
GluI GCNGC 3 cut(s) 78, 102, 198
HaeIII GGCC 2 cut(s) 131, 240
HapII CCGG 1 cut(s) 84
Hin1II CATG 1 cut(s) 119
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HindIII AAGCTT 1 cut(s) 106
HinfI GANTC 2 cut(s) 112, 394
HpaI GTTAAC 1 cut(s) 283
HpaII CCGG 1 cut(s) 84
Hpy166II GTNNAC 2 cut(s) 218, 283
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 1 cut(s) 299
Hpy8I GTNNAC 2 cut(s) 218, 283
HpyAV CCTTC 2 cut(s) 59, 363
HpyCH4III ACNGT 3 cut(s) 7, 138, 349
HpyCH4V TGCA 5 cut(s) 35, 80, 119, 182, 218
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 77
Hsp92II CATG 1 cut(s) 119
KpnI GGTACC 1 cut(s) 353
KspAI GTTAAC 1 cut(s) 283
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 7 cut(s) 11, 24, 97, 168, 222, 312, 317
Lsp1109I GCAGC 3 cut(s) 64, 113, 209
LweI GCATC 2 cut(s) 44, 89
MaeIII GTNAC 2 cut(s) 138, 245
MboII GAAGA 2 cut(s) 55, 403
MhlI GDGCHC 1 cut(s) 220
MlsI TGGCCA 1 cut(s) 240
MluCI AATT 1 cut(s) 360
MluNI TGGCCA 1 cut(s) 240
MnlI CCTC 2 cut(s) 154, 329
Mox20I TGGCCA 1 cut(s) 240
Mph1103I ATGCAT 1 cut(s) 37
MscI TGGCCA 1 cut(s) 240
MseI TTAA 3 cut(s) 282, 375, 386
Msp20I TGGCCA 1 cut(s) 240
MspI CCGG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 68, 77
NlaIII CATG 1 cut(s) 119
NlaIV GGNNCC 2 cut(s) 61, 351
NmuCI GTSAC 1 cut(s) 245
NsiI ATGCAT 1 cut(s) 37
PfeI GAWTC 2 cut(s) 112, 394
PkrI GCNGC 3 cut(s) 79, 103, 199
PspN4I GGNNCC 2 cut(s) 61, 351
PspPI GGNCC 1 cut(s) 130
RsaI GTAC 2 cut(s) 308, 351
RsaNI GTAC 2 cut(s) 307, 350
SaqAI TTAA 3 cut(s) 282, 375, 386
SatI GCNGC 3 cut(s) 78, 102, 198
Sau96I GGNCC 1 cut(s) 130
SduI GDGCHC 1 cut(s) 220
SetI ASST 6 cut(s) 51, 110, 171, 180, 187, 355
SfaNI GCATC 2 cut(s) 44, 89
Sse9I AATT 1 cut(s) 360
TaaI ACNGT 3 cut(s) 7, 138, 349
TasI AATT 1 cut(s) 360
TfiI GAWTC 2 cut(s) 112, 394
Tru1I TTAA 3 cut(s) 282, 375, 386
Tru9I TTAA 3 cut(s) 282, 375, 386
TscAI CASTG 1 cut(s) 12
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 3 cut(s) 77, 101, 197
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 2 cut(s) 108, 404
TspRI CASTG 1 cut(s) 12
VneI GTGCAC 1 cut(s) 216
Zsp2I ATGCAT 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.