RLG00000011651

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017674
Physical Location & Seq
Forward (+)
11410373 .. 11412845
2473 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011651

Sequence Viewer

Length: 933 bp
ATGTCTATGTACGGAGGAGGCAGCAGCAGAGGCAGCGGCCCAAACCGGGACGCGAGGGACGTACCGCCGCTGGCTTTGCGTTCGGTTCATGGAACCACCAATGTTGGACTAGCAACCAAAATGTTTCAGATTTTAGCCGTGGATGGAAGACTTAATACGTACAGGGGCTCCGATCTTGTAGTAGACTGTGATGATGACAAGAAACTATTTGAGATTTCACAATTTTCAAATATCTATTGTACCGCAGCCGGCACAGCCGGGCCTTGGGATCGGATGTACTATTATGTGAAAATAGCGGAAGAACAAAGGACGGGGAACCCTACTTCCGCTGAATTTGCTATGAAGATGGTTTATAAGCACTGTTCTGAATGTGAAAAAGAGGCATGGACGTTAAGTTATAATTATGAGGGTATAATAGCTGGATGGCCAACTGGAGGGGTTCCTCAAATGTATCAGTTTGTGGTCAAGGAGAACATACCTACAGATAAAGAAATTCTTCTCGAAGATCATTCCTCATCAAAATTTAAAAATGTTGCTGTAGCAGAAAGTGGTCTCCAGTATGCAGCCTCACATATGGCAAAATTAGAGAAGATTACATTGAAGGATGAAGTAGACGGTGCCAACCGCTGTCTAGAGAGTGTTTTTCGAGCTGGCGGCGTTGATCCGTACACAGGAGGGAGAATAGAGGTTGGTTGTCTGAAGGAAGGCTCTTACAGTGTAATGTTCTCGTATGATGCTTTGGATGCTTATTCGCACTGTTATGCGGCAGATTATGAGCAAGTATTGTTCTTATTTGTGCCGGATAATAGGACTCTCACGGCAGAGGAAATTAAAAATACATGGTCTTGGCTGAAAATTAGGGCTGCACATTGTATAGCTGTTACAAAACATTTTGCATTCCATCGCATTTTGTTTGTAACAGCGTTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

311

Amino Acids

34.58

Weight (kDa)

5.67

Isoelectric Point (pI)

33.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 30 - 153 1.1e-06 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017674)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30991 FvH4_5g31000
rosa_chinensis RchiOBHm_Chr2g0091881
rosa_laevigata RLG00000011651
rosa_roxburghii Rroxscaffold_2G00149640
rosa_rugosa Rorug02G0021500
rosa_samantha Rh2AG066900 Rh2BG065900 Rh2CG067300 Rh2DG066000 Rh6DG378500
rosa_wichuraiana Rw2G005390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 354, 399
AccB1I GGYRCC 1 cut(s) 617
AccI GTMKAC 2 cut(s) 183, 612
AccII CGCG 1 cut(s) 53
AciI CCGC 9 cut(s) 36, 65, 68, 243, 296, 327, 625, 654, 764
AclWI GGATC 2 cut(s) 276, 656
AcoI YGGCCR 1 cut(s) 425
AcsI RAATTY 3 cut(s) 332, 492, 521
AcuI CTGAAG 1 cut(s) 719
AfaI GTAC 6 cut(s) 11, 63, 161, 241, 278, 668
AfiI CCNNNNNNNGG 4 cut(s) 46, 264, 434, 671
AgsI TTSAA 2 cut(s) 228, 601
AloI GAACNNNNNNTCC 2 cut(s) 308, 340
AluBI AGCT 3 cut(s) 419, 650, 878
AluI AGCT 3 cut(s) 419, 650, 878
Alw26I GTCTC 1 cut(s) 557
AlwI GGATC 2 cut(s) 276, 656
AoxI GGCC 3 cut(s) 37, 260, 425
ApeKI GCWGC 6 cut(s) 21, 24, 33, 245, 563, 863
ApoI RAATTY 3 cut(s) 332, 492, 521
Asp700I GAANNNNTTC 1 cut(s) 495
AspS9I GGNCC 2 cut(s) 38, 260
AsuC2I CCSGG 2 cut(s) 47, 259
BalI TGGCCA 1 cut(s) 427
BanI GGYRCC 1 cut(s) 617
BanII GRGCYC 1 cut(s) 170
BarI GAAGNNNNNNTAC 2 cut(s) 139, 171
BbsI GAAGAC 1 cut(s) 154
BbvI GCAGC 6 cut(s) 33, 36, 45, 257, 575, 850
BccI CCATC 4 cut(s) 137, 340, 417, 909
BceAI ACGGC 2 cut(s) 122, 834
BcnI CCSGG 2 cut(s) 47, 259
BcoDI GTCTC 1 cut(s) 557
BfaI CTAG 2 cut(s) 110, 632
BfmI CTRYAG 2 cut(s) 480, 537
Bme1390I CCNGG 2 cut(s) 47, 259
BmgT120I GGNCC 2 cut(s) 38, 260
BmiI GGNNCC 5 cut(s) 94, 169, 317, 441, 619
BmrFI CCNGG 2 cut(s) 47, 259
BmsI GCATC 2 cut(s) 724, 733
BpiI GAAGAC 1 cut(s) 154
BpmI CTGGAG 2 cut(s) 453, 539
BpuMI CCSGG 2 cut(s) 47, 259
BsaAI YACGTR 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 557
BsaJI CCNNGG 2 cut(s) 138, 263
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 264, 434, 671
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 2 cut(s) 436, 556
BseDI CCNNGG 2 cut(s) 138, 263
BseGI GGATG 5 cut(s) 148, 279, 428, 610, 748
BseLI CCNNNNNNNGG 4 cut(s) 46, 264, 434, 671
BseNI ACTGG 2 cut(s) 436, 556
BseRI GAGGAG 1 cut(s) 30
BseXI GCAGC 6 cut(s) 33, 36, 45, 257, 575, 850
BsgI GTGCAG 1 cut(s) 849
Bsh1236I CGCG 1 cut(s) 53
BshFI GGCC 3 cut(s) 39, 262, 427
BshNI GGYRCC 1 cut(s) 617
BsiSI CCGG 4 cut(s) 46, 249, 258, 800
BslFI GGGAC 2 cut(s) 62, 71
BslI CCNNNNNNNGG 4 cut(s) 46, 264, 434, 671
BsmAI GTCTC 1 cut(s) 557
BsmFI GGGAC 2 cut(s) 62, 71
BsmI GAATGC 1 cut(s) 896
BsnI GGCC 3 cut(s) 39, 262, 427
Bso31I GGTCTC 1 cut(s) 557
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 4 cut(s) 172, 268, 505, 661
BspACI CCGC 9 cut(s) 36, 65, 68, 243, 296, 327, 625, 654, 764
BspANI GGCC 3 cut(s) 39, 262, 427
BspFNI CGCG 1 cut(s) 53
BspLI GGNNCC 5 cut(s) 94, 169, 317, 441, 619
BspPI GGATC 2 cut(s) 276, 656
BspT107I GGYRCC 1 cut(s) 617
BspTNI GGTCTC 1 cut(s) 557
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 2 cut(s) 436, 556
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 2 cut(s) 138, 263
BssMI GATC 4 cut(s) 172, 268, 505, 661
BssT1I CCWWGG 1 cut(s) 263
Bst4CI ACNGT 5 cut(s) 188, 362, 617, 716, 758
BstBAI YACGTR 1 cut(s) 159
BstC8I GCNNGC 3 cut(s) 72, 250, 652
BstDSI CCRYGG 1 cut(s) 138
BstF5I GGATG 5 cut(s) 148, 279, 428, 610, 748
BstFNI CGCG 1 cut(s) 53
BstKTI GATC 4 cut(s) 175, 271, 508, 664
BstMAI GTCTC 1 cut(s) 557
BstMBI GATC 4 cut(s) 172, 268, 505, 661
BstMWI GCNNNNNNNGC 6 cut(s) 30, 33, 76, 254, 335, 743
BstSCI CCNGG 2 cut(s) 45, 257
BstSFI CTRYAG 2 cut(s) 480, 537
BstSNI TACGTA 1 cut(s) 159
BstUI CGCG 1 cut(s) 53
BstV1I GCAGC 6 cut(s) 33, 36, 45, 257, 575, 850
BstV2I GAAGAC 1 cut(s) 154
BsuRI GGCC 3 cut(s) 39, 262, 427
BtgI CCRYGG 1 cut(s) 138
BtgZI GCGATG 1 cut(s) 887
BtsCI GGATG 5 cut(s) 148, 279, 428, 610, 748
BtsIMutI CAGTG 3 cut(s) 358, 721, 754
Cac8I GCNNGC 3 cut(s) 72, 250, 652
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 2 cut(s) 38, 260
CseI GACGC 1 cut(s) 59
Csp6I GTAC 6 cut(s) 10, 62, 160, 240, 277, 667
CspCI CAANNNNNGTGG 2 cut(s) 85, 120
CviAII CATG 3 cut(s) 89, 384, 840
CviQI GTAC 6 cut(s) 10, 62, 160, 240, 277, 667
DpnI GATC 4 cut(s) 174, 270, 507, 663
DpnII GATC 4 cut(s) 172, 268, 505, 661
DraI TTTAAA 1 cut(s) 526
EaeI YGGCCR 1 cut(s) 425
Eco105I TACGTA 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 170
Eco31I GGTCTC 1 cut(s) 557
Eco57I CTGAAG 1 cut(s) 719
EcoT14I CCWWGG 1 cut(s) 263
EcoT38I GRGCYC 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 263
FaeI CATG 3 cut(s) 92, 387, 843
FalI AAGNNNNNCTT 2 cut(s) 480, 512
FaqI GGGAC 2 cut(s) 62, 71
FatI CATG 3 cut(s) 88, 383, 839
FauNDI CATATG 1 cut(s) 573
FblI GTMKAC 2 cut(s) 183, 612
FokI GGATG 5 cut(s) 155, 286, 435, 617, 755
FriOI GRGCYC 1 cut(s) 170
FspBI CTAG 2 cut(s) 110, 632
GsuI CTGGAG 2 cut(s) 453, 539
HaeIII GGCC 3 cut(s) 39, 262, 427
HapII CCGG 4 cut(s) 46, 249, 258, 800
HgaI GACGC 1 cut(s) 59
Hin1II CATG 3 cut(s) 92, 387, 843
HinfI GANTC 1 cut(s) 811
HpaII CCGG 4 cut(s) 46, 249, 258, 800
Hpy166II GTNNAC 3 cut(s) 184, 613, 669
Hpy188I TCNGA 5 cut(s) 129, 172, 273, 367, 699
Hpy188III TCNNGA 2 cut(s) 500, 632
Hpy8I GTNNAC 3 cut(s) 184, 613, 669
HpyAV CCTTC 3 cut(s) 595, 694, 698
HpyCH4III ACNGT 5 cut(s) 188, 362, 617, 716, 758
HpyCH4IV ACGT 3 cut(s) 60, 158, 389
HpyCH4V TGCA 3 cut(s) 563, 866, 896
HpyF10VI GCNNNNNNNGC 6 cut(s) 30, 33, 76, 254, 335, 743
HpySE526I ACGT 3 cut(s) 60, 158, 389
Hsp92II CATG 3 cut(s) 92, 387, 843
KroI GCCGGC 1 cut(s) 248
KroNI GCCGGC 1 cut(s) 250
Kzo9I GATC 4 cut(s) 172, 268, 505, 661
LmnI GCTCC 1 cut(s) 173
Lsp1109I GCAGC 6 cut(s) 33, 36, 45, 257, 575, 850
LweI GCATC 2 cut(s) 724, 733
MaeI CTAG 2 cut(s) 110, 632
MaeII ACGT 3 cut(s) 60, 158, 389
MaeIII GTNAC 2 cut(s) 880, 916
MalI GATC 4 cut(s) 174, 270, 507, 663
MboI GATC 4 cut(s) 172, 268, 505, 661
MboII GAAGA 6 cut(s) 159, 311, 355, 488, 515, 601
MhlI GDGCHC 1 cut(s) 170
MlsI TGGCCA 1 cut(s) 427
MluCI AATT 8 cut(s) 221, 332, 400, 492, 521, 581, 828, 855
MluNI TGGCCA 1 cut(s) 427
MlyI GAGTC 1 cut(s) 805
MmeI TCCRAC 1 cut(s) 85
Mox20I TGGCCA 1 cut(s) 427
MroNI GCCGGC 1 cut(s) 248
MroXI GAANNNNTTC 1 cut(s) 495
MscI TGGCCA 1 cut(s) 427
MseI TTAA 4 cut(s) 153, 392, 525, 831
MslI CAYNNNNRTG 1 cut(s) 759
Msp20I TGGCCA 1 cut(s) 427
MspA1I CMGCKG 4 cut(s) 36, 70, 329, 627
MspI CCGG 4 cut(s) 46, 249, 258, 800
MspR9I CCNGG 2 cut(s) 47, 259
Mva1269I GAATGC 1 cut(s) 896
MvnI CGCG 1 cut(s) 53
MwoI GCNNNNNNNGC 6 cut(s) 30, 33, 76, 254, 335, 743
NaeI GCCGGC 1 cut(s) 250
NciI CCSGG 2 cut(s) 47, 259
NdeI CATATG 1 cut(s) 573
NdeII GATC 4 cut(s) 172, 268, 505, 661
NgoMIV GCCGGC 1 cut(s) 248
NlaIII CATG 3 cut(s) 92, 387, 843
NlaIV GGNNCC 5 cut(s) 94, 169, 317, 441, 619
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PctI GAATGC 1 cut(s) 896
PdiI GCCGGC 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 495
PleI GAGTC 1 cut(s) 805
PpsI GAGTC 1 cut(s) 805
Ppu21I YACGTR 1 cut(s) 159
PsiI TTATAA 2 cut(s) 354, 399
PspN4I GGNNCC 5 cut(s) 94, 169, 317, 441, 619
PspPI GGNCC 2 cut(s) 38, 260
RsaI GTAC 6 cut(s) 11, 63, 161, 241, 278, 668
RsaNI GTAC 6 cut(s) 10, 62, 160, 240, 277, 667
RseI CAYNNNNRTG 1 cut(s) 759
SaqAI TTAA 4 cut(s) 153, 392, 525, 831
Sau3AI GATC 4 cut(s) 172, 268, 505, 661
Sau96I GGNCC 2 cut(s) 38, 260
SchI GAGTC 1 cut(s) 805
ScrFI CCNGG 2 cut(s) 47, 259
SduI GDGCHC 1 cut(s) 170
SetI ASST 8 cut(s) 63, 161, 392, 421, 481, 652, 690, 880
SfaNI GCATC 2 cut(s) 724, 733
SfcI CTRYAG 2 cut(s) 480, 537
SmiMI CAYNNNNRTG 1 cut(s) 759
SnaBI TACGTA 1 cut(s) 159
Sse9I AATT 8 cut(s) 221, 332, 400, 492, 521, 581, 828, 855
SsiI CCGC 9 cut(s) 36, 65, 68, 243, 296, 327, 625, 654, 764
SspMI CTAG 2 cut(s) 110, 632
StyD4I CCNGG 2 cut(s) 45, 257
StyI CCWWGG 1 cut(s) 263
TaaI ACNGT 5 cut(s) 188, 362, 617, 716, 758
TaiI ACGT 3 cut(s) 63, 161, 392
TaqI TCGA 2 cut(s) 501, 646
TasI AATT 8 cut(s) 221, 332, 400, 492, 521, 581, 828, 855
TatI WGTACW 1 cut(s) 276
TauI GCSGC 4 cut(s) 39, 70, 657, 767
Tru1I TTAA 4 cut(s) 153, 392, 525, 831
Tru9I TTAA 4 cut(s) 153, 392, 525, 831
TscAI CASTG 3 cut(s) 365, 721, 761
TseI GCWGC 6 cut(s) 21, 24, 33, 245, 563, 863
TspDTI ATGAA 3 cut(s) 77, 356, 621
TspGWI ACGGA 2 cut(s) 27, 654
TspRI CASTG 3 cut(s) 365, 721, 761
XapI RAATTY 3 cut(s) 332, 492, 521
XbaI TCTAGA 1 cut(s) 631
XmiI GTMKAC 2 cut(s) 183, 612
XmnI GAANNNNTTC 1 cut(s) 495
XspI CTAG 2 cut(s) 110, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.