Rw2G005390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0017674
Physical Location & Seq
Forward (+)
5093097 .. 5094393
1297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G005390.1

Sequence Viewer

Length: 786 bp
ATGGGGAACACTACTACCGCTGAGTTTGCTAAGGACATGCTTTATAAGCACTGTTCTGAATGTGAAAAAGAGAGACGGACGTCAACTTATAATTATGAGGGTATAATAGCTGGGTGGCCAACTGGAAGGGTTGGTCAAATGTATGAGTTCTGGGTCATCAAGAACAAACCTGGACATCAAAAAATTATTGTGGATGATTGCTCTACAGCGATATTTAAGAACGTTGCCACAGCGGGAAGTGGCAGCCAGCATGCAGCCTTTCATATGGCGACATATGGGGTCTTGAAGGATGAATTAGAAGGTGCCAACTGTTTTCTAGAGGCTATTTTCAGAGCTGGTGGCATTGATCCATCCACCGGAGGAAAATCAGAGGTTGGTTGTCTCAAGGAGGGCACTTATGATGTAATGTTCTCTATGGATGACTTGGACACCTATTCGCACTGTTACACGACAGATTTTGATGAAGTTCTATTTCTATTTGTTCCGGGAAAGGAGCCTGTCACCGCTGATGAGATTAAAAAAGCTTGGCCTACACTAAAAATTAGGGCCGCACATTGCATAGCTGTTACAAATTATTTTGCGTTCCATCACATTTTATTTGTAACCAAGTATGACAAAGAGAGAGCGGAGAAATACTTTTTAGGCGGAGATGAGCCGGATCTTGGGAAAGTTAATTCGCCTGACGAGTTTCTTGCAGCCCTCCATGAGGTGATAATAGGCGGAACAAAATGTCGTCTAAGCAGAAAGTCAAAGAGAACAATCGATTTGATCCGTCGGATGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

29.29

Weight (kDa)

6.32

Isoelectric Point (pI)

21.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017674)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30991 FvH4_5g31000
rosa_chinensis RchiOBHm_Chr2g0091881
rosa_laevigata RLG00000011651
rosa_roxburghii Rroxscaffold_2G00149640
rosa_rugosa Rorug02G0021500
rosa_samantha Rh2AG066900 Rh2BG065900 Rh2CG067300 Rh2DG066000 Rh6DG378500
rosa_wichuraiana Rw2G005390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 45, 90
AatII GACGTC 1 cut(s) 83
AccB1I GGYRCC 1 cut(s) 302
AccBSI CCGCTC 1 cut(s) 626
AciI CCGC 7 cut(s) 18, 233, 504, 549, 626, 645, 720
AclI AACGTT 1 cut(s) 222
AclWI GGATC 3 cut(s) 341, 666, 763
AcoI YGGCCR 1 cut(s) 116
AcyI GRCGYC 1 cut(s) 80
AfiI CCNNNNNNNGG 3 cut(s) 356, 662, 706
AgsI TTSAA 1 cut(s) 286
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 4 cut(s) 110, 335, 524, 563
AluI AGCT 4 cut(s) 110, 335, 524, 563
Alw26I GTCTC 2 cut(s) 67, 386
AlwI GGATC 3 cut(s) 341, 666, 763
AoxI GGCC 3 cut(s) 116, 527, 546
ApeKI GCWGC 3 cut(s) 243, 254, 695
AspS9I GGNCC 1 cut(s) 546
AsuC2I CCSGG 1 cut(s) 486
AsuHPI GGTGA 2 cut(s) 493, 721
BaeGI GKGCMC 1 cut(s) 395
BalI TGGCCA 1 cut(s) 118
BanI GGYRCC 1 cut(s) 302
BbvI GCAGC 3 cut(s) 255, 266, 707
BccI CCATC 2 cut(s) 358, 594
BcgI CGANNNNNNTGC 2 cut(s) 674, 708
BciT130I CCWGG 1 cut(s) 171
BcnI CCSGG 1 cut(s) 486
BcoDI GTCTC 2 cut(s) 67, 386
BfaI CTAG 1 cut(s) 317
BfmI CTRYAG 1 cut(s) 204
BisI GCNGC 4 cut(s) 244, 255, 549, 696
BlsI GCNGC 4 cut(s) 245, 256, 550, 697
Bme1390I CCNGG 2 cut(s) 171, 486
BmgT120I GGNCC 1 cut(s) 546
BmiI GGNNCC 2 cut(s) 304, 495
BmrFI CCNGG 2 cut(s) 171, 486
BoxI GACNNNNGTC 1 cut(s) 79
Bpu10I CCTNAGC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 368
BpuMI CCSGG 1 cut(s) 486
Bsa29I ATCGAT 1 cut(s) 762
BsaHI GRCGYC 1 cut(s) 80
BsaWI WCCGGW 1 cut(s) 356
Bsc4I CCNNNNNNNGG 3 cut(s) 356, 662, 706
Bse1I ACTGG 1 cut(s) 127
Bse3DI GCAATG 1 cut(s) 553
BseBI CCWGG 1 cut(s) 171
BseCI ATCGAT 1 cut(s) 762
BseGI GGATG 5 cut(s) 199, 295, 350, 424, 783
BseLI CCNNNNNNNGG 3 cut(s) 356, 662, 706
BseMI GCAATG 1 cut(s) 553
BseMII CTCAG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 127
BseSI GKGCMC 1 cut(s) 395
BseXI GCAGC 3 cut(s) 255, 266, 707
BseYI CCCAGC 1 cut(s) 110
BshFI GGCC 3 cut(s) 118, 529, 548
BshNI GGYRCC 1 cut(s) 302
BshVI ATCGAT 1 cut(s) 762
BsiSI CCGG 3 cut(s) 357, 485, 656
BslI CCNNNNNNNGG 3 cut(s) 356, 662, 706
BsmAI GTCTC 2 cut(s) 67, 386
BsmBI CGTCTC 1 cut(s) 67
BsnI GGCC 3 cut(s) 118, 529, 548
Bsp1286I GDGCHC 1 cut(s) 395
Bsp143I GATC 3 cut(s) 346, 658, 768
BspACI CCGC 7 cut(s) 18, 233, 504, 549, 626, 645, 720
BspANI GGCC 3 cut(s) 118, 529, 548
BspCNI CTCAG 1 cut(s) 13
BspDI ATCGAT 1 cut(s) 762
BspLI GGNNCC 2 cut(s) 304, 495
BspPI GGATC 3 cut(s) 341, 666, 763
BspT107I GGYRCC 1 cut(s) 302
BsrBI CCGCTC 1 cut(s) 626
BsrDI GCAATG 1 cut(s) 553
BsrI ACTGG 1 cut(s) 127
BssMI GATC 3 cut(s) 346, 658, 768
BssNI GRCGYC 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 3 cut(s) 53, 311, 443
BstACI GRCGYC 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 248, 252
BstDEI CTNAG 3 cut(s) 21, 30, 737
BstENI CCTNNNNNAGG 1 cut(s) 704
BstF5I GGATG 5 cut(s) 199, 295, 350, 424, 783
BstKTI GATC 3 cut(s) 349, 661, 771
BstMAI GTCTC 2 cut(s) 67, 386
BstMBI GATC 3 cut(s) 346, 658, 768
BstMWI GCNNNNNNNGC 2 cut(s) 26, 46
BstNI CCWGG 1 cut(s) 171
BstNSI RCATGY 2 cut(s) 40, 254
BstPAI GACNNNNGTC 1 cut(s) 79
BstSCI CCNGG 2 cut(s) 169, 484
BstSFI CTRYAG 1 cut(s) 204
BstSLI GKGCMC 1 cut(s) 395
BstV1I GCAGC 3 cut(s) 255, 266, 707
BstX2I RGATCY 1 cut(s) 658
BstYI RGATCY 1 cut(s) 658
Bsu15I ATCGAT 1 cut(s) 762
BsuRI GGCC 3 cut(s) 118, 529, 548
BsuTUI ATCGAT 1 cut(s) 762
BtsCI GGATG 5 cut(s) 199, 295, 350, 424, 783
BtsIMutI CAGTG 2 cut(s) 49, 439
Cac8I GCNNGC 2 cut(s) 248, 252
Cfr13I GGNCC 1 cut(s) 546
ClaI ATCGAT 1 cut(s) 762
CviAII CATG 3 cut(s) 37, 251, 704
DdeI CTNAG 3 cut(s) 21, 30, 737
DpnI GATC 3 cut(s) 348, 660, 770
DpnII GATC 3 cut(s) 346, 658, 768
EaeI YGGCCR 1 cut(s) 116
EciI GGCGGA 2 cut(s) 660, 735
EcoNI CCTNNNNNAGG 1 cut(s) 704
EcoRII CCWGG 1 cut(s) 169
Esp3I CGTCTC 1 cut(s) 67
FaeI CATG 3 cut(s) 40, 254, 707
FatI CATG 3 cut(s) 36, 250, 703
FauI CCCGC 1 cut(s) 226
FauNDI CATATG 2 cut(s) 264, 274
Fnu4HI GCNGC 4 cut(s) 244, 255, 549, 696
FokI GGATG 4 cut(s) 206, 302, 337, 431
Fsp4HI GCNGC 4 cut(s) 244, 255, 549, 696
FspBI CTAG 1 cut(s) 317
GluI GCNGC 4 cut(s) 244, 255, 549, 696
GsaI CCCAGC 1 cut(s) 114
HaeIII GGCC 3 cut(s) 118, 529, 548
HapII CCGG 3 cut(s) 357, 485, 656
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 3 cut(s) 40, 254, 707
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HindIII AAGCTT 1 cut(s) 522
HpaII CCGG 3 cut(s) 357, 485, 656
HphI GGTGA 2 cut(s) 493, 721
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 4 cut(s) 58, 332, 370, 777
Hpy188III TCNNGA 3 cut(s) 160, 283, 317
Hpy8I GTNNAC 1 cut(s) 84
Hpy99I CGWCG 1 cut(s) 777
HpyAV CCTTC 3 cut(s) 120, 280, 293
HpyCH4III ACNGT 3 cut(s) 53, 311, 443
HpyCH4IV ACGT 2 cut(s) 80, 222
HpyCH4V TGCA 3 cut(s) 254, 558, 695
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 46
HpyF3I CTNAG 3 cut(s) 21, 30, 737
HpySE526I ACGT 2 cut(s) 80, 222
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 3 cut(s) 40, 254, 707
Kzo9I GATC 3 cut(s) 346, 658, 768
LmnI GCTCC 1 cut(s) 493
Lsp1109I GCAGC 3 cut(s) 255, 266, 707
MaeI CTAG 1 cut(s) 317
MaeII ACGT 2 cut(s) 80, 222
MaeIII GTNAC 4 cut(s) 443, 499, 565, 601
MalI GATC 3 cut(s) 348, 660, 770
MbiI CCGCTC 1 cut(s) 626
MboI GATC 3 cut(s) 346, 658, 768
MflI RGATCY 1 cut(s) 658
MhlI GDGCHC 1 cut(s) 395
MlsI TGGCCA 1 cut(s) 118
MluCI AATT 6 cut(s) 91, 183, 293, 540, 571, 673
MluNI TGGCCA 1 cut(s) 118
MmeI TCCRAC 1 cut(s) 755
MnlI CCTC 7 cut(s) 91, 313, 353, 364, 382, 700, 710
Mox20I TGGCCA 1 cut(s) 118
MscI TGGCCA 1 cut(s) 118
MseI TTAA 3 cut(s) 216, 516, 672
Msp20I TGGCCA 1 cut(s) 118
MspA1I CMGCKG 3 cut(s) 20, 233, 506
MspI CCGG 3 cut(s) 357, 485, 656
MspR9I CCNGG 2 cut(s) 171, 486
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 2 cut(s) 26, 46
NciI CCSGG 1 cut(s) 486
NdeI CATATG 2 cut(s) 264, 274
NdeII GATC 3 cut(s) 346, 658, 768
NlaIII CATG 3 cut(s) 40, 254, 707
NlaIV GGNNCC 2 cut(s) 304, 495
NmuCI GTSAC 1 cut(s) 499
NspI RCATGY 2 cut(s) 40, 254
PaeI GCATGC 1 cut(s) 254
PfoI TCCNGGA 1 cut(s) 484
PkrI GCNGC 4 cut(s) 245, 256, 550, 697
PshAI GACNNNNGTC 1 cut(s) 79
PsiI TTATAA 2 cut(s) 45, 90
Psp1406I AACGTT 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 169
PspFI CCCAGC 1 cut(s) 110
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 2 cut(s) 304, 495
PspPI GGNCC 1 cut(s) 546
PsuI RGATCY 1 cut(s) 658
SaqAI TTAA 3 cut(s) 216, 516, 672
SatI GCNGC 4 cut(s) 244, 255, 549, 696
Sau3AI GATC 3 cut(s) 346, 658, 768
Sau96I GGNCC 1 cut(s) 546
ScrFI CCNGG 2 cut(s) 171, 486
SduI GDGCHC 1 cut(s) 395
SfcI CTRYAG 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
SphI GCATGC 1 cut(s) 254
Sse9I AATT 6 cut(s) 91, 183, 293, 540, 571, 673
SsiI CCGC 7 cut(s) 18, 233, 504, 549, 626, 645, 720
SspMI CTAG 1 cut(s) 317
StyD4I CCNGG 2 cut(s) 169, 484
TaaI ACNGT 3 cut(s) 53, 311, 443
TaiI ACGT 2 cut(s) 83, 225
TaqI TCGA 1 cut(s) 762
TasI AATT 6 cut(s) 91, 183, 293, 540, 571, 673
TauI GCSGC 1 cut(s) 551
Tru1I TTAA 3 cut(s) 216, 516, 672
Tru9I TTAA 3 cut(s) 216, 516, 672
TscAI CASTG 2 cut(s) 56, 446
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 3 cut(s) 243, 254, 695
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 3 cut(s) 251, 306, 477
TspGWI ACGGA 2 cut(s) 91, 761
TspRI CASTG 2 cut(s) 56, 446
XagI CCTNNNNNAGG 1 cut(s) 704
XbaI TCTAGA 1 cut(s) 316
XceI RCATGY 2 cut(s) 40, 254
XspI CTAG 1 cut(s) 317
ZraI GACGTC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.