Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0017674

Physical Location & Seq

Genomic Coordinates Reverse (-)

5603902 .. 5604323

Gene Structure 422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG067300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAATACAGTGAGGGACTATAGGGATTTACCGGCAGAATCAATGTTCCTTTATTCTCTAAACCAGAGGTTCTTTAAAATAGCTCGTAGAAAAGATCCACCCTTCGTCTCATGCTCAACTTCCGCAGATGTTCTATTTAATCCCTTGAAGGCGTACATGATGACTTCATCTTGTAAAGAAAAGGGAACAATTCAGGCCCAAGAGTCGATCCTGATTGAGGTTGCCAGGGTACGGCTGCATGGGTTTTCAGAACGAGAAGTGTCTATAGTTCGAGCTTTACTGATGTCAGAGATTGAATCTGCATATTTGGAACGCGATCAAATGCAGTCAACTAGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PITH Peptidase_M16 Peptidase_M16_C

Protein Analysis

113

Amino Acids

13.02

Weight (kDa)

7.77

Isoelectric Point (pI)

51.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017674)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30991 FvH4_5g31000
rosa_chinensis	RchiOBHm_Chr2g0091881
rosa_laevigata	RLG00000011651
rosa_roxburghii	Rroxscaffold_2G00149640
rosa_rugosa	Rorug02G0021500
rosa_samantha	Rh2AG066900 Rh2BG065900 Rh2CG067300 Rh2DG066000 Rh6DG378500
rosa_wichuraiana	Rw2G005390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	315
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	2 cut(s)	89, 202
AfaI	GTAC	2 cut(s)	155, 231
AfiI	CCNNNNNNNGG	2 cut(s)	217, 231
AgsI	TTSAA	2 cut(s)	148, 296
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	3 cut(s)	83, 275, 336
AluI	AGCT	3 cut(s)	83, 275, 336
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	2 cut(s)	89, 202
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	235
AspS9I	GGNCC	1 cut(s)	196
BbvI	GCAGC	1 cut(s)	222
BceAI	ACGGC	1 cut(s)	248
BciT130I	CCWGG	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	333
BfmI	CTRYAG	2 cut(s)	19, 264
BisI	GCNGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	237
Bme1390I	CCNGG	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	226
BsaJI	CCNNGG	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 231
Bse118I	RCCGGY	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	226
BseDI	CCNNGG	1 cut(s)	225
BseLI	CCNNNNNNNGG	2 cut(s)	217, 231
BseXI	GCAGC	1 cut(s)	222
Bsh1236I	CGCG	1 cut(s)	315
BshFI	GGCC	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	2 cut(s)	217, 231
BsmAI	GTCTC	1 cut(s)	112
BsmBI	CGTCTC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	1 cut(s)	197
Bsp143I	GATC	3 cut(s)	94, 207, 316
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	197
BspFNI	CGCG	1 cut(s)	315
BspPI	GGATC	2 cut(s)	89, 202
BsrFI	RCCGGY	1 cut(s)	31
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	3 cut(s)	94, 207, 316
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	1 cut(s)	10
BstENI	CCTNNNNNAGG	1 cut(s)	215
BstFNI	CGCG	1 cut(s)	315
BstKTI	GATC	3 cut(s)	97, 210, 319
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	3 cut(s)	94, 207, 316
BstNI	CCWGG	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	224
BstSFI	CTRYAG	2 cut(s)	19, 264
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	197
BtsIMutI	CAGTG	1 cut(s)	15
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	196
Csp6I	GTAC	2 cut(s)	154, 230
CviAII	CATG	3 cut(s)	111, 157, 239
CviJI	RGCY	5 cut(s)	83, 197, 235, 275, 336
CviKI_1	RGCY	5 cut(s)	83, 197, 235, 275, 336
CviQI	GTAC	2 cut(s)	154, 230
DpnI	GATC	3 cut(s)	96, 209, 318
DpnII	GATC	3 cut(s)	94, 207, 316
DraI	TTTAAA	1 cut(s)	76
EcoNI	CCTNNNNNAGG	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	224
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	3 cut(s)	114, 160, 242
FaiI	YATR	6 cut(s)	21, 112, 158, 240, 266, 304
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	3 cut(s)	110, 156, 238
Fnu4HI	GCNGC	1 cut(s)	236
Fsp4HI	GCNGC	1 cut(s)	236
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	1 cut(s)	236
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	1 cut(s)	32
Hin1II	CATG	3 cut(s)	114, 160, 242
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HinfI	GANTC	3 cut(s)	38, 203, 296
HpaII	CCGG	1 cut(s)	32
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	2 cut(s)	250, 289
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	1 cut(s)	330
HpyAV	CCTTC	2 cut(s)	112, 142
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4V	TGCA	3 cut(s)	238, 302, 325
Hsp92II	CATG	3 cut(s)	114, 160, 242
Kzo9I	GATC	3 cut(s)	94, 207, 316
LpnPI	CCDG	6 cut(s)	45, 77, 179, 211, 224, 238
Lsp1109I	GCAGC	1 cut(s)	222
MaeI	CTAG	1 cut(s)	333
MalI	GATC	3 cut(s)	96, 209, 318
MboI	GATC	3 cut(s)	94, 207, 316
MflI	RGATCY	1 cut(s)	94
MluCI	AATT	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	3 cut(s)	6, 60, 211
MseI	TTAA	2 cut(s)	75, 138
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	226
MvnI	CGCG	1 cut(s)	315
NdeII	GATC	3 cut(s)	94, 207, 316
NlaIII	CATG	3 cut(s)	114, 160, 242
PfeI	GAWTC	2 cut(s)	38, 296
PkrI	GCNGC	1 cut(s)	237
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	224
PspPI	GGNCC	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	94
RsaI	GTAC	2 cut(s)	155, 231
RsaNI	GTAC	2 cut(s)	154, 230
SaqAI	TTAA	2 cut(s)	75, 138
SatI	GCNGC	1 cut(s)	236
Sau3AI	GATC	3 cut(s)	94, 207, 316
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	226
SetI	ASST	5 cut(s)	71, 85, 222, 277, 338
SfcI	CTRYAG	2 cut(s)	19, 264
Sse9I	AATT	1 cut(s)	189
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	1 cut(s)	224
TaaI	ACNGT	1 cut(s)	10
TaqI	TCGA	2 cut(s)	206, 271
TasI	AATT	1 cut(s)	189
TfiI	GAWTC	2 cut(s)	38, 296
Tru1I	TTAA	2 cut(s)	75, 138
Tru9I	TTAA	2 cut(s)	75, 138
TscAI	CASTG	1 cut(s)	15
TseI	GCWGC	1 cut(s)	235
TspDTI	ATGAA	2 cut(s)	17, 156
TspRI	CASTG	1 cut(s)	15
XagI	CCTNNNNNAGG	1 cut(s)	215
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.