Rroxscaffold_2G00149640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017674
Physical Location & Seq
Forward (+)
87161318 .. 87163393
2076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00149640.1

Sequence Viewer

Length: 564 bp
ATGGCTACTAGAGAGAGACCCGAGAAGAAGAGAGCGACTGGCGCGATTGAGCCTTGGGATCGGATGTACGAATATGTGGAAAAAGCGGTGTCCAAGGAAGAACAAAGGACGGGGAACACTACTACCGCTGAGTTTGCTAAGGACATGCTTTATAAGCACTGTTCGAATGTGAAAAAGAGAGACGGACATCAACTTATAATTATGAGGGTCATCAAGAACAAACCTGGACATCAAGAAAGTATTGTGGATGATTGCTCTACATTGATATTTAAGAACGTTCCCACAGCGGGAAGTGGCAGCCAGCGTGCAGCCTCTCATATTGATGTAGAACGCCTTGCAGAAGAATTAGAAGAGCAGCTTGAGAAACGCATTGATAAACAACGTCCTTTCAATGCGTTACATATGGCGACATATGGGGTCTCGAAGGATGAATTAGAAGGCGCCAACCGCTGTCTAGAGGCTATTTTCAGAGCTGGTGGCATTGATCCATCCACCGGAGGAAAATTAGAGGTTGGTTGTCTCAAGGAGGGCACTTATGATGTAATGTTCTCTATCGATGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

21.01

Weight (kDa)

6.24

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017674)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30991 FvH4_5g31000
rosa_chinensis RchiOBHm_Chr2g0091881
rosa_laevigata RLG00000011651
rosa_roxburghii Rroxscaffold_2G00149640
rosa_rugosa Rorug02G0021500
rosa_samantha Rh2AG066900 Rh2BG065900 Rh2CG067300 Rh2DG066000 Rh6DG378500
rosa_wichuraiana Rw2G005390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 153, 197
AccB1I GGYRCC 1 cut(s) 440
AccII CGCG 1 cut(s) 44
AciI CCGC 4 cut(s) 86, 126, 287, 448
AclI AACGTT 1 cut(s) 276
AclWI GGATC 2 cut(s) 66, 479
AcyI GRCGYC 1 cut(s) 441
AfaI GTAC 1 cut(s) 68
AfiI CCNNNNNNNGG 2 cut(s) 287, 494
AgsI TTSAA 1 cut(s) 391
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 2 cut(s) 358, 473
AluI AGCT 2 cut(s) 358, 473
Alw26I GTCTC 4 cut(s) 10, 174, 424, 524
AlwI GGATC 2 cut(s) 66, 479
Ama87I CYCGRG 1 cut(s) 20
ApeKI GCWGC 3 cut(s) 297, 308, 355
AspLEI GCGC 2 cut(s) 44, 443
AsuII TTCGAA 1 cut(s) 164
AvaI CYCGRG 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 533
BanI GGYRCC 1 cut(s) 440
BbvI GCAGC 3 cut(s) 309, 320, 367
BccI CCATC 1 cut(s) 496
BciT130I CCWGG 1 cut(s) 225
BcoDI GTCTC 4 cut(s) 10, 174, 424, 524
BfaI CTAG 2 cut(s) 9, 455
BfoI RGCGCY 1 cut(s) 444
BisI GCNGC 3 cut(s) 298, 309, 356
BlsI GCNGC 3 cut(s) 299, 310, 357
Bme1390I CCNGG 1 cut(s) 225
BmeT110I CYCGRG 1 cut(s) 20
BmiI GGNNCC 1 cut(s) 442
BmrFI CCNGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 547
Bpu10I CCTNAGC 1 cut(s) 138
Bpu14I TTCGAA 1 cut(s) 164
BpuEI CTTGAG 2 cut(s) 380, 506
Bsa29I ATCGAT 1 cut(s) 555
BsaHI GRCGYC 1 cut(s) 441
BsaI GGTCTC 2 cut(s) 10, 424
BsaJI CCNNGG 2 cut(s) 53, 93
BsaWI WCCGGW 1 cut(s) 494
Bsc4I CCNNNNNNNGG 2 cut(s) 287, 494
Bse1I ACTGG 1 cut(s) 43
BseBI CCWGG 1 cut(s) 225
BseCI ATCGAT 1 cut(s) 555
BseDI CCNNGG 2 cut(s) 53, 93
BseGI GGATG 4 cut(s) 69, 253, 433, 488
BseLI CCNNNNNNNGG 2 cut(s) 287, 494
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 43
BseSI GKGCMC 1 cut(s) 533
BseXI GCAGC 3 cut(s) 309, 320, 367
BsgI GTGCAG 1 cut(s) 327
Bsh1236I CGCG 1 cut(s) 44
BshNI GGYRCC 1 cut(s) 440
BshVI ATCGAT 1 cut(s) 555
BsiHKCI CYCGRG 1 cut(s) 20
BsiSI CCGG 1 cut(s) 495
BslI CCNNNNNNNGG 2 cut(s) 287, 494
BsmAI GTCTC 4 cut(s) 10, 174, 424, 524
BsmBI CGTCTC 1 cut(s) 174
Bso31I GGTCTC 2 cut(s) 10, 424
BsoBI CYCGRG 1 cut(s) 20
Bsp119I TTCGAA 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 533
Bsp143I GATC 2 cut(s) 58, 484
BspACI CCGC 4 cut(s) 86, 126, 287, 448
BspCNI CTCAG 1 cut(s) 121
BspDI ATCGAT 1 cut(s) 555
BspFNI CGCG 1 cut(s) 44
BspLI GGNNCC 1 cut(s) 442
BspPI GGATC 2 cut(s) 66, 479
BspQI GCTCTTC 1 cut(s) 345
BspT104I TTCGAA 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 440
BspTNI GGTCTC 2 cut(s) 10, 424
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 53, 93
BssMI GATC 2 cut(s) 58, 484
BssNI GRCGYC 1 cut(s) 441
BssT1I CCWWGG 2 cut(s) 53, 93
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 2 cut(s) 23, 345
BstACI GRCGYC 1 cut(s) 441
BstBI TTCGAA 1 cut(s) 164
BstC8I GCNNGC 2 cut(s) 302, 306
BstDEI CTNAG 2 cut(s) 129, 138
BstF5I GGATG 4 cut(s) 69, 253, 433, 488
BstFNI CGCG 1 cut(s) 44
BstH2I RGCGCY 1 cut(s) 444
BstHHI GCGC 2 cut(s) 44, 443
BstKTI GATC 2 cut(s) 61, 487
BstMAI GTCTC 4 cut(s) 10, 174, 424, 524
BstMBI GATC 2 cut(s) 58, 484
BstMWI GCNNNNNNNGC 4 cut(s) 41, 134, 154, 447
BstNI CCWGG 1 cut(s) 225
BstNSI RCATGY 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 223
BstSLI GKGCMC 1 cut(s) 533
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 3 cut(s) 309, 320, 367
Bsu15I ATCGAT 1 cut(s) 555
BsuTUI ATCGAT 1 cut(s) 555
BtsCI GGATG 4 cut(s) 69, 253, 433, 488
BtsIMutI CAGTG 1 cut(s) 157
Cac8I GCNNGC 2 cut(s) 302, 306
CfoI GCGC 2 cut(s) 44, 443
ClaI ATCGAT 1 cut(s) 555
Csp6I GTAC 1 cut(s) 67
CviAII CATG 1 cut(s) 145
CviJI RGCY 7 cut(s) 5, 52, 300, 311, 358, 461, 473
CviKI_1 RGCY 7 cut(s) 5, 52, 300, 311, 358, 461, 473
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 2 cut(s) 129, 138
DinI GGCGCC 1 cut(s) 442
DpnI GATC 2 cut(s) 60, 486
DpnII GATC 2 cut(s) 58, 484
Eam1104I CTCTTC 2 cut(s) 23, 345
EarI CTCTTC 2 cut(s) 23, 345
Eco130I CCWWGG 2 cut(s) 53, 93
Eco31I GGTCTC 2 cut(s) 10, 424
Eco88I CYCGRG 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 223
EcoT14I CCWWGG 2 cut(s) 53, 93
EgeI GGCGCC 1 cut(s) 442
EheI GGCGCC 1 cut(s) 442
ErhI CCWWGG 2 cut(s) 53, 93
Esp3I CGTCTC 1 cut(s) 174
FaeI CATG 1 cut(s) 148
FalI AAGNNNNNCTT 2 cut(s) 342, 374
FatI CATG 1 cut(s) 144
FauI CCCGC 1 cut(s) 280
FauNDI CATATG 2 cut(s) 402, 412
Fnu4HI GCNGC 3 cut(s) 298, 309, 356
FokI GGATG 4 cut(s) 76, 260, 440, 475
Fsp4HI GCNGC 3 cut(s) 298, 309, 356
FspBI CTAG 2 cut(s) 9, 455
GlaI GCGC 2 cut(s) 43, 442
GluI GCNGC 3 cut(s) 298, 309, 356
HaeII RGCGCY 1 cut(s) 444
HapII CCGG 1 cut(s) 495
HhaI GCGC 2 cut(s) 44, 443
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 1 cut(s) 148
Hin6I GCGC 2 cut(s) 42, 441
HinP1I GCGC 2 cut(s) 42, 441
HpaII CCGG 1 cut(s) 495
Hpy188I TCNGA 2 cut(s) 63, 470
Hpy188III TCNNGA 4 cut(s) 214, 233, 421, 455
HpyAV CCTTC 2 cut(s) 418, 431
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4IV ACGT 2 cut(s) 276, 382
HpyCH4V TGCA 2 cut(s) 308, 338
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 134, 154, 447
HpyF3I CTNAG 2 cut(s) 129, 138
HpySE526I ACGT 2 cut(s) 276, 382
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 1 cut(s) 148
HspAI GCGC 2 cut(s) 42, 441
KasI GGCGCC 1 cut(s) 440
Kzo9I GATC 2 cut(s) 58, 484
LguI GCTCTTC 1 cut(s) 345
LpnPI CCDG 6 cut(s) 24, 210, 237, 314, 459, 508
Lsp1109I GCAGC 3 cut(s) 309, 320, 367
LweI GCATC 1 cut(s) 547
MaeI CTAG 2 cut(s) 9, 455
MaeII ACGT 2 cut(s) 276, 382
MaeIII GTNAC 1 cut(s) 396
MalI GATC 2 cut(s) 60, 486
MboI GATC 2 cut(s) 58, 484
MboII GAAGA 5 cut(s) 37, 40, 110, 353, 362
MhlI GDGCHC 1 cut(s) 533
MluCI AATT 4 cut(s) 198, 344, 431, 503
Mly113I GGCGCC 1 cut(s) 441
MnlI CCTC 6 cut(s) 198, 322, 451, 491, 502, 520
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 1 cut(s) 321
MspA1I CMGCKG 3 cut(s) 128, 287, 450
MspI CCGG 1 cut(s) 495
MspR9I CCNGG 1 cut(s) 225
MvaI CCWGG 1 cut(s) 225
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 4 cut(s) 41, 134, 154, 447
NarI GGCGCC 1 cut(s) 441
NdeI CATATG 2 cut(s) 402, 412
NdeII GATC 2 cut(s) 58, 484
NlaIII CATG 1 cut(s) 148
NlaIV GGNNCC 1 cut(s) 442
NspI RCATGY 1 cut(s) 148
NspV TTCGAA 1 cut(s) 164
PciSI GCTCTTC 1 cut(s) 345
PkrI GCNGC 3 cut(s) 299, 310, 357
PluTI GGCGCC 1 cut(s) 444
PsiI TTATAA 2 cut(s) 153, 197
Psp1406I AACGTT 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 1 cut(s) 442
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 321
SapI GCTCTTC 1 cut(s) 345
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 3 cut(s) 298, 309, 356
Sau3AI GATC 2 cut(s) 58, 484
ScrFI CCNGG 1 cut(s) 225
SduI GDGCHC 1 cut(s) 533
SetI ASST 6 cut(s) 226, 279, 360, 385, 475, 513
SfaNI GCATC 1 cut(s) 547
SfoI GGCGCC 1 cut(s) 442
SfuI TTCGAA 1 cut(s) 164
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 2 cut(s) 359, 521
SmoI CTYRAG 2 cut(s) 359, 521
Sse9I AATT 4 cut(s) 198, 344, 431, 503
SsiI CCGC 4 cut(s) 86, 126, 287, 448
SspDI GGCGCC 1 cut(s) 440
SspMI CTAG 2 cut(s) 9, 455
StyD4I CCNGG 1 cut(s) 223
StyI CCWWGG 2 cut(s) 53, 93
TaaI ACNGT 1 cut(s) 161
TaiI ACGT 2 cut(s) 279, 385
TaqI TCGA 3 cut(s) 164, 422, 555
TasI AATT 4 cut(s) 198, 344, 431, 503
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 164
TseI GCWGC 3 cut(s) 297, 308, 355
TspDTI ATGAA 1 cut(s) 444
TspGWI ACGGA 1 cut(s) 198
TspRI CASTG 1 cut(s) 164
XbaI TCTAGA 1 cut(s) 454
XceI RCATGY 1 cut(s) 148
XspI CTAG 2 cut(s) 9, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.