Rh6DG378500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0017674
Physical Location & Seq
Reverse (-)
57265474 .. 57268092
2619 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG378500.1

Sequence Viewer

Length: 1110 bp
ATGTCTATGTACGGAGGAGGCAGCAGTAGAGGCAGCGGCCCAAACCGGGACGCGAGGGACGTACCGCCGCTGGCTTTGCGTTCGGTTCATGGAACCACCAATGTTGGACTAGCAACCAAAATGTTTCAGATTTTAGCCGTGGATGGAAGACTTAGTACGTACAGGGGCTCCGATCTTGTAGTAGACTGTGATGATGACAAGAAACTATTTGAGATTTCACAATTTTCAAATATCTATTGTACCGCAGCCGGCACAGCTGGGCCTTGGGATCGGATGTACTATTATGTGAAAAAAGCGGTGTCCAAGGAAGAACAAAGGACGGGGAACCCTACTACCGCTGAATTTGCTATGAAGATGGTTTATAAGCACTGTTCTGAATGTGAAAAAGAGGAATGGACGTTAAGTTATAATTATGAGGGTATAATAGCTGGATGGCCAACTGGAGGGGTTCCTCAAATGTATCAGTTTGTGGTCAAGGAGAACATACCTAGAAATAAAGAAATTCTTCTCGAAGATCATTCCTCATCAAAATTTAAAAATGTTGCCGTAGCAGGAAGTGGTCTCCGGCATGCAGCCTCACATATGGCAAAACTAGAGAAGATTACATTGAAGGATGAAGTAGACGGTGCCAACCGCTGCCTAGAGAGTGTTTTCCGAGCTGGCGGCGTTGATCCAAACACAGGAGGGAGAATAGAGGTTGGTTGTTTGAAGGAAGGCTCTTACAGCGTAATGTTCTCGTATGATGCTTTGGATGCTTATTCGCACTGTTATGCAGCTGATTATGAGCAAGTATTGTTCTTATTTGTGCCGGGTAATAGGACTCTGACCGCAGAGGAAATTAAAAATACATGGTCTTGGCTAAAAATTAGGGCTGCACATTGTATAGCTGTTACAAAACATTTTGCATTCCATCGCATTTTGTTTGTAACAGTGTTTGACCGAATCAGAGCAGAGGAAGTTTTTTGTGGCGGAGATGAGCCGGATCTTGAGCACATTAGTTCGCCTCAGGAGCTTCTTTCAGCCCTCCCTATAGTGAAGATATGTAAGATACATTGTCGAGTTAGCAAGAAGTCGAAGAGCGTGATAGATTTGATCTGCCGGACCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

369

Amino Acids

41.13

Weight (kDa)

7.54

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 30 - 156 6.4e-10 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017674)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30991 FvH4_5g31000
rosa_chinensis RchiOBHm_Chr2g0091881
rosa_laevigata RLG00000011651
rosa_roxburghii Rroxscaffold_2G00149640
rosa_rugosa Rorug02G0021500
rosa_samantha Rh2AG066900 Rh2BG065900 Rh2CG067300 Rh2DG066000 Rh6DG378500
rosa_wichuraiana Rw2G005390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 363, 408
AccB1I GGYRCC 1 cut(s) 626
AccI GTMKAC 2 cut(s) 183, 621
AccII CGCG 1 cut(s) 53
AclWI GGATC 3 cut(s) 276, 665, 990
AcoI YGGCCR 1 cut(s) 434
AcsI RAATTY 3 cut(s) 341, 501, 530
AfaI GTAC 6 cut(s) 11, 63, 157, 161, 241, 278
AfiI CCNNNNNNNGG 3 cut(s) 46, 443, 680
AgsI TTSAA 3 cut(s) 228, 610, 709
AluBI AGCT 6 cut(s) 257, 428, 659, 776, 887, 1012
AluI AGCT 6 cut(s) 257, 428, 659, 776, 887, 1012
Alw21I GWGCWC 1 cut(s) 993
Alw26I GTCTC 1 cut(s) 566
AlwI GGATC 3 cut(s) 276, 665, 990
AoxI GGCC 3 cut(s) 37, 260, 434
ApeKI GCWGC 7 cut(s) 21, 33, 245, 572, 636, 773, 872
ApoI RAATTY 3 cut(s) 341, 501, 530
Asp700I GAANNNNTTC 1 cut(s) 504
AspS9I GGNCC 3 cut(s) 38, 260, 1101
AsuC2I CCSGG 2 cut(s) 47, 810
AvaII GGWCC 1 cut(s) 1101
AxyI CCTNAGG 1 cut(s) 1005
BalI TGGCCA 1 cut(s) 436
BanI GGYRCC 1 cut(s) 626
BanII GRGCYC 1 cut(s) 170
BarI GAAGNNNNNNTAC 2 cut(s) 139, 171
BbsI GAAGAC 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 993
BbvI GCAGC 7 cut(s) 33, 45, 257, 584, 623, 785, 859
BccI CCATC 4 cut(s) 137, 349, 426, 918
BceAI ACGGC 2 cut(s) 122, 530
BcnI CCSGG 2 cut(s) 47, 810
BcoDI GTCTC 1 cut(s) 566
BfaI CTAG 4 cut(s) 110, 489, 593, 641
BfmI CTRYAG 1 cut(s) 1029
Bme1390I CCNGG 2 cut(s) 47, 810
Bme18I GGWCC 1 cut(s) 1101
BmgT120I GGNCC 3 cut(s) 38, 260, 1101
BmiI GGNNCC 5 cut(s) 94, 169, 326, 450, 628
BmrFI CCNGG 2 cut(s) 47, 810
BmsI GCATC 2 cut(s) 733, 742
BpiI GAAGAC 1 cut(s) 154
BpmI CTGGAG 1 cut(s) 462
BpuEI CTTGAG 1 cut(s) 1007
BpuMI CCSGG 2 cut(s) 47, 810
BsaAI YACGTR 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 566
BsaJI CCNNGG 3 cut(s) 138, 263, 303
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 443, 680
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 445
Bse21I CCTNAGG 1 cut(s) 1005
BseDI CCNNGG 3 cut(s) 138, 263, 303
BseGI GGATG 5 cut(s) 148, 279, 437, 619, 757
BseLI CCNNNNNNNGG 3 cut(s) 46, 443, 680
BseMII CTCAG 1 cut(s) 1019
BseNI ACTGG 1 cut(s) 445
BseRI GAGGAG 1 cut(s) 30
BseXI GCAGC 7 cut(s) 33, 45, 257, 584, 623, 785, 859
BseYI CCCAGC 1 cut(s) 257
BsgI GTGCAG 1 cut(s) 858
Bsh1236I CGCG 1 cut(s) 53
BshFI GGCC 3 cut(s) 39, 262, 436
BshNI GGYRCC 1 cut(s) 626
BsiHKAI GWGCWC 1 cut(s) 993
BsiSI CCGG 6 cut(s) 46, 249, 565, 809, 980, 1099
BslFI GGGAC 2 cut(s) 62, 71
BslI CCNNNNNNNGG 3 cut(s) 46, 443, 680
BsmAI GTCTC 1 cut(s) 566
BsmFI GGGAC 2 cut(s) 62, 71
BsmI GAATGC 1 cut(s) 905
BsnI GGCC 3 cut(s) 39, 262, 436
Bso31I GGTCTC 1 cut(s) 566
Bsp1286I GDGCHC 2 cut(s) 170, 993
Bsp143I GATC 6 cut(s) 172, 268, 514, 670, 982, 1092
BspANI GGCC 3 cut(s) 39, 262, 436
BspCNI CTCAG 1 cut(s) 1018
BspFNI CGCG 1 cut(s) 53
BspLI GGNNCC 5 cut(s) 94, 169, 326, 450, 628
BspPI GGATC 3 cut(s) 276, 665, 990
BspQI GCTCTTC 1 cut(s) 1070
BspT107I GGYRCC 1 cut(s) 626
BspTNI GGTCTC 1 cut(s) 566
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 1 cut(s) 445
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 3 cut(s) 138, 263, 303
BssMI GATC 6 cut(s) 172, 268, 514, 670, 982, 1092
BssT1I CCWWGG 2 cut(s) 263, 303
Bst4CI ACNGT 5 cut(s) 188, 371, 626, 767, 931
Bst6I CTCTTC 1 cut(s) 1070
BstBAI YACGTR 1 cut(s) 159
BstC8I GCNNGC 4 cut(s) 72, 250, 570, 661
BstDEI CTNAG 2 cut(s) 152, 1005
BstDSI CCRYGG 1 cut(s) 138
BstF5I GGATG 5 cut(s) 148, 279, 437, 619, 757
BstFNI CGCG 1 cut(s) 53
BstKTI GATC 6 cut(s) 175, 271, 517, 673, 985, 1095
BstMAI GTCTC 1 cut(s) 566
BstMBI GATC 6 cut(s) 172, 268, 514, 670, 982, 1092
BstMWI GCNNNNNNNGC 7 cut(s) 30, 76, 254, 344, 723, 752, 1009
BstNSI RCATGY 1 cut(s) 572
BstSCI CCNGG 2 cut(s) 45, 808
BstSFI CTRYAG 1 cut(s) 1029
BstSNI TACGTA 1 cut(s) 159
BstUI CGCG 1 cut(s) 53
BstV1I GCAGC 7 cut(s) 33, 45, 257, 584, 623, 785, 859
BstV2I GAAGAC 1 cut(s) 154
BstX2I RGATCY 1 cut(s) 982
BstYI RGATCY 1 cut(s) 982
Bsu36I CCTNAGG 1 cut(s) 1005
BsuRI GGCC 3 cut(s) 39, 262, 436
BtgI CCRYGG 1 cut(s) 138
BtgZI GCGATG 1 cut(s) 896
BtsCI GGATG 5 cut(s) 148, 279, 437, 619, 757
BtsIMutI CAGTG 3 cut(s) 367, 763, 936
Cac8I GCNNGC 4 cut(s) 72, 250, 570, 661
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 3 cut(s) 38, 260, 1101
CseI GACGC 1 cut(s) 59
Csp6I GTAC 6 cut(s) 10, 62, 156, 160, 240, 277
CspCI CAANNNNNGTGG 2 cut(s) 85, 120
CviAII CATG 3 cut(s) 89, 569, 849
CviQI GTAC 6 cut(s) 10, 62, 156, 160, 240, 277
DdeI CTNAG 2 cut(s) 152, 1005
DpnI GATC 6 cut(s) 174, 270, 516, 672, 984, 1094
DpnII GATC 6 cut(s) 172, 268, 514, 670, 982, 1092
DraI TTTAAA 1 cut(s) 535
EaeI YGGCCR 1 cut(s) 434
Eam1104I CTCTTC 1 cut(s) 1070
EarI CTCTTC 1 cut(s) 1070
EciI GGCGGA 1 cut(s) 984
Eco105I TACGTA 1 cut(s) 159
Eco130I CCWWGG 2 cut(s) 263, 303
Eco24I GRGCYC 1 cut(s) 170
Eco31I GGTCTC 1 cut(s) 566
Eco47I GGWCC 1 cut(s) 1101
Eco81I CCTNAGG 1 cut(s) 1005
EcoT14I CCWWGG 2 cut(s) 263, 303
EcoT38I GRGCYC 1 cut(s) 170
ErhI CCWWGG 2 cut(s) 263, 303
FaeI CATG 3 cut(s) 92, 572, 852
FalI AAGNNNNNCTT 2 cut(s) 489, 521
FaqI GGGAC 2 cut(s) 62, 71
FatI CATG 3 cut(s) 88, 568, 848
FauNDI CATATG 1 cut(s) 582
FblI GTMKAC 2 cut(s) 183, 621
FokI GGATG 5 cut(s) 155, 286, 444, 626, 764
FriOI GRGCYC 1 cut(s) 170
FspBI CTAG 4 cut(s) 110, 489, 593, 641
GsaI CCCAGC 1 cut(s) 261
GsuI CTGGAG 1 cut(s) 462
HaeIII GGCC 3 cut(s) 39, 262, 436
HapII CCGG 6 cut(s) 46, 249, 565, 809, 980, 1099
HgaI GACGC 1 cut(s) 59
Hin1II CATG 3 cut(s) 92, 572, 852
HinfI GANTC 2 cut(s) 820, 942
HpaII CCGG 6 cut(s) 46, 249, 565, 809, 980, 1099
Hpy166II GTNNAC 2 cut(s) 184, 622
Hpy188I TCNGA 7 cut(s) 129, 172, 273, 376, 656, 825, 947
Hpy188III TCNNGA 3 cut(s) 509, 986, 1007
Hpy8I GTNNAC 2 cut(s) 184, 622
HpyAV CCTTC 3 cut(s) 604, 703, 707
HpyCH4III ACNGT 5 cut(s) 188, 371, 626, 767, 931
HpyCH4IV ACGT 3 cut(s) 60, 158, 398
HpyCH4V TGCA 4 cut(s) 572, 773, 875, 905
HpyF10VI GCNNNNNNNGC 7 cut(s) 30, 76, 254, 344, 723, 752, 1009
HpyF3I CTNAG 2 cut(s) 152, 1005
HpySE526I ACGT 3 cut(s) 60, 158, 398
Hsp92II CATG 3 cut(s) 92, 572, 852
KroI GCCGGC 1 cut(s) 248
KroNI GCCGGC 1 cut(s) 250
Kzo9I GATC 6 cut(s) 172, 268, 514, 670, 982, 1092
LguI GCTCTTC 1 cut(s) 1070
LmnI GCTCC 2 cut(s) 173, 1009
Lsp1109I GCAGC 7 cut(s) 33, 45, 257, 584, 623, 785, 859
LweI GCATC 2 cut(s) 733, 742
MaeI CTAG 4 cut(s) 110, 489, 593, 641
MaeII ACGT 3 cut(s) 60, 158, 398
MaeIII GTNAC 2 cut(s) 889, 925
MalI GATC 6 cut(s) 174, 270, 516, 672, 984, 1094
MboI GATC 6 cut(s) 172, 268, 514, 670, 982, 1092
MboII GAAGA 8 cut(s) 159, 320, 364, 497, 524, 610, 1048, 1087
MflI RGATCY 1 cut(s) 982
MhlI GDGCHC 2 cut(s) 170, 993
MlsI TGGCCA 1 cut(s) 436
MluCI AATT 7 cut(s) 221, 341, 409, 501, 530, 837, 864
MluNI TGGCCA 1 cut(s) 436
MlyI GAGTC 1 cut(s) 814
MmeI TCCRAC 1 cut(s) 85
Mox20I TGGCCA 1 cut(s) 436
MroNI GCCGGC 1 cut(s) 248
MroXI GAANNNNTTC 1 cut(s) 504
MscI TGGCCA 1 cut(s) 436
MseI TTAA 3 cut(s) 401, 534, 840
MslI CAYNNNNRTG 1 cut(s) 768
Msp20I TGGCCA 1 cut(s) 436
MspA1I CMGCKG 6 cut(s) 36, 70, 257, 338, 636, 776
MspI CCGG 6 cut(s) 46, 249, 565, 809, 980, 1099
MspR9I CCNGG 2 cut(s) 47, 810
Mva1269I GAATGC 1 cut(s) 905
MvnI CGCG 1 cut(s) 53
MwoI GCNNNNNNNGC 7 cut(s) 30, 76, 254, 344, 723, 752, 1009
NaeI GCCGGC 1 cut(s) 250
NciI CCSGG 2 cut(s) 47, 810
NdeI CATATG 1 cut(s) 582
NdeII GATC 6 cut(s) 172, 268, 514, 670, 982, 1092
NgoMIV GCCGGC 1 cut(s) 248
NlaIII CATG 3 cut(s) 92, 572, 852
NlaIV GGNNCC 5 cut(s) 94, 169, 326, 450, 628
NspI RCATGY 1 cut(s) 572
PaeI GCATGC 1 cut(s) 572
PciSI GCTCTTC 1 cut(s) 1070
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PctI GAATGC 1 cut(s) 905
PdiI GCCGGC 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 504
PfeI GAWTC 1 cut(s) 942
PleI GAGTC 1 cut(s) 814
PpsI GAGTC 1 cut(s) 814
Ppu21I YACGTR 1 cut(s) 159
PsiI TTATAA 2 cut(s) 363, 408
PspFI CCCAGC 1 cut(s) 257
PspN4I GGNNCC 5 cut(s) 94, 169, 326, 450, 628
PspPI GGNCC 3 cut(s) 38, 260, 1101
PsuI RGATCY 1 cut(s) 982
PvuII CAGCTG 2 cut(s) 257, 776
RsaI GTAC 6 cut(s) 11, 63, 157, 161, 241, 278
RsaNI GTAC 6 cut(s) 10, 62, 156, 160, 240, 277
RseI CAYNNNNRTG 1 cut(s) 768
SapI GCTCTTC 1 cut(s) 1070
SaqAI TTAA 3 cut(s) 401, 534, 840
Sau3AI GATC 6 cut(s) 172, 268, 514, 670, 982, 1092
Sau96I GGNCC 3 cut(s) 38, 260, 1101
SchI GAGTC 1 cut(s) 814
ScrFI CCNGG 2 cut(s) 47, 810
SduI GDGCHC 2 cut(s) 170, 993
SfaNI GCATC 2 cut(s) 733, 742
SfcI CTRYAG 1 cut(s) 1029
SinI GGWCC 1 cut(s) 1101
SmiMI CAYNNNNRTG 1 cut(s) 768
SmlI CTYRAG 1 cut(s) 986
SmoI CTYRAG 1 cut(s) 986
SnaBI TACGTA 1 cut(s) 159
SphI GCATGC 1 cut(s) 572
Sse9I AATT 7 cut(s) 221, 341, 409, 501, 530, 837, 864
SspMI CTAG 4 cut(s) 110, 489, 593, 641
StyD4I CCNGG 2 cut(s) 45, 808
StyI CCWWGG 2 cut(s) 263, 303
TaaI ACNGT 5 cut(s) 188, 371, 626, 767, 931
TaiI ACGT 3 cut(s) 63, 161, 401
TaqI TCGA 3 cut(s) 510, 1057, 1073
TaqII GACCGA 1 cut(s) 954
TasI AATT 7 cut(s) 221, 341, 409, 501, 530, 837, 864
TatI WGTACW 1 cut(s) 276
TauI GCSGC 3 cut(s) 39, 70, 666
TfiI GAWTC 1 cut(s) 942
Tru1I TTAA 3 cut(s) 401, 534, 840
Tru9I TTAA 3 cut(s) 401, 534, 840
TscAI CASTG 3 cut(s) 374, 770, 936
TseI GCWGC 7 cut(s) 21, 33, 245, 572, 636, 773, 872
TspDTI ATGAA 3 cut(s) 77, 365, 630
TspGWI ACGGA 1 cut(s) 27
TspRI CASTG 3 cut(s) 374, 770, 936
VpaK11BI GGWCC 1 cut(s) 1101
XapI RAATTY 3 cut(s) 341, 501, 530
XceI RCATGY 1 cut(s) 572
XmiI GTMKAC 2 cut(s) 183, 621
XmnI GAANNNNTTC 1 cut(s) 504
XspI CTAG 4 cut(s) 110, 489, 593, 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.