RLG00000012940

Belongs to the histone deacetylase family. HD Type 1 subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0006237
Physical Location & Seq
Reverse (-)
24093975 .. 24097568
3594 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012940

Sequence Viewer

Length: 1629 bp
ATGAAACACCAAGAGCCAGTTTACCTCGTTAACATCTGCGCAGCTGAAACTAGAAGAGACAAGACAAGCCCGCCACTTCTCCTTCTCTCTTCTGTACTTCTCTCTCTTGTTGGCTTCTCTCCTCTCTCAACTCCCAACCAGGGAGGTGCTATGGACACCGGCGGCAACTCGCTGGCGTCGGGTCCCGACGGCGTGAAGCGCAAAGTGAGCTACTTCTACGACCCGGAAGTGGGAAATTACTATTATGGGCAGGGTCATCCGATGAAGCCCCACCGCATCAGAATGACCCACGCCCTTTTAGCCCATTATGGTCTTCTCCAGCACATGCAGGTCCTCAAACCCTACCCGGCCCGGGACCGGGACCTCTGCCGCTTCCACGCCGACGACTACGTGGCGTTTCTCCGGAGCATTACCCCCGAAACGCAGCAGGACCAGCTGAGGCAGCTCAAGAGGTTCAATGTGGGAGAGGATTGCCCTGTGTTTGATGGGTTGTACTCGTTTTGTCAGACTTATGCCGGGGGGTCTGTTGGTGGGGCTGTCAAGCTGAATCATGGGATTTGCGATATTTCGATTAATTGGGCTGGGGGGTTGCACCATGCTAAGAAGTGTGAAGCTTCTGGGTTTTGTTATGTCAATGACATTGTGCTCGCAATCTTGGAACTGCTTAAACAACACGAGAGAGTTTTGTATGTGGACATTGATATCCACCATGGGGACGGTGTTGAGGAGGCGTTTTACACAACAGACAGGGTCATGACGGTTTCGTTTCATAAATTTGGAGACTATTTTCCGGGGACGGGGGACATTCGTGATATTGGGTACGGGAAAGGGAAGTATTACTCCCTAAATGTTCCATTAGATGATGGAATTGATGATGAGAGCTACCATTACTTGTTCAAACCCCTCATTGGGAAGGTTATGGAGATATTTAGGCCTGGTGCTGTTGTTCTACAGTGTGGTGCTGATTCCTTATCTGGGGATAGGCTTGGTTGCTTTAATCTTTCCATCAAGGGTCATGCTGAATGTGTTAGATACATGAGATCCTTCAATGTCCCGCTTTTGCTTCTAGGCGGTGGCGGGTATACTATTCGCAATGTTGCTCGTTGCTGGTGCTATGAGACTGGTGTTGCCCTTGGAGCAGAAATTGAGGACAAAATGCCACAGCATGAGTATTATGAGTATTTTGGTCCGGACTATACTCTTCATGTTGCCCCTAGTAATATGGAAAACAAGAATTCTCATCAGTTACTGGAAGAAATACGATCAAAACTTCTTGAAAATCTCTCCAGGCTTCAGCATGCACCTAGTGTCCAATTTCATGAAAGGCCTCCTGAAAATGAGCTTCCAGAGGAAGATGAGGATCAGGATGACAGAGACGAGAGATGGGATGCCGATTCTGATATGGAGCTTGATGACAGACCTATAGCAGCAAGAAGAGTAAAGAAAGAGATTGTTGAACCTGAGGTTAAAGATCCGAAAGGAGCTGTAGAGAATTCTAGAGGCTATGATGCAGGACTGGATGAAATTACAACAAGCGCAAAGGCTTTGGATATGGGCTCTGGGTCTATGGAGGAACCAAGTGTAAAAGTTGAACAAGAATCTCTGAATAAGCCTGCAGATCAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0002376 GO:0003674 GO:0003824 GO:0004407 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006476 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009405 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0016575 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044764 GO:0045087 GO:0045892 GO:0045934 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098542 GO:0098732 GO:0140096 GO:1901564 GO:1902459 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000036 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04110 ko04213 ko04330 ko04919 ko05016 ko05034 ko05165 ko05169 ko05200 ko05202 ko05203 ko05220 map04110 map04213 map04330 map04919 map05016 map05034 map05165 map05169 map05200 map05202 map05203 map05220
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

543

Amino Acids

60.79

Weight (kDa)

5.23

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 86 - 374 3.1e-87 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 40
Acc36I ACCTGC 1 cut(s) 319
AccI GTMKAC 1 cut(s) 1082
AccIII TCCGGA 2 cut(s) 402, 1189
AciI CCGC 7 cut(s) 71, 162, 274, 370, 1055, 1071, 1077
AclWI GGATC 3 cut(s) 1035, 1368, 1466
AcsI RAATTY 3 cut(s) 773, 1234, 1492
AcuI CTGAAG 1 cut(s) 1277
AcyI GRCGYC 1 cut(s) 176
AdeI CACNNNGTG 1 cut(s) 1307
AfaI GTAC 3 cut(s) 96, 494, 821
AgsI TTSAA 6 cut(s) 457, 898, 1048, 1277, 1457, 1592
AjnI CCWGG 3 cut(s) 138, 934, 1286
Alw21I GWGCWC 1 cut(s) 648
Alw26I GTCTC 4 cut(s) 51, 774, 1112, 1368
AlwI GGATC 3 cut(s) 1035, 1368, 1466
AlwNI CAGNNNCTG 1 cut(s) 1249
Ama87I CYCGRG 1 cut(s) 351
Aor13HI TCCGGA 2 cut(s) 402, 1189
AoxI GGCC 3 cut(s) 348, 932, 1325
ApeKI GCWGC 4 cut(s) 41, 424, 442, 1427
ApoI RAATTY 3 cut(s) 773, 1234, 1492
AseI ATTAAT 1 cut(s) 573
AspLEI GCGC 3 cut(s) 41, 201, 1538
AspS9I GGNCC 7 cut(s) 182, 331, 349, 355, 361, 430, 1187
AsuC2I CCSGG 7 cut(s) 224, 347, 352, 353, 359, 517, 792
AvaI CYCGRG 1 cut(s) 351
AvaII GGWCC 6 cut(s) 182, 331, 355, 361, 430, 1187
AxyI CCTNAGG 1 cut(s) 1461
BanII GRGCYC 1 cut(s) 1559
BauI CACGAG 1 cut(s) 674
BbsI GAAGAC 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 648
BbvCI CCTCAGC 1 cut(s) 437
BbvI GCAGC 4 cut(s) 53, 436, 454, 1439
BccI CCATC 4 cut(s) 479, 857, 1013, 1377
BceAI ACGGC 1 cut(s) 205
BciT130I CCWGG 3 cut(s) 140, 936, 1288
BcnI CCSGG 7 cut(s) 224, 347, 352, 353, 359, 517, 792
BcoDI GTCTC 4 cut(s) 51, 774, 1112, 1368
BfaI CTAG 5 cut(s) 51, 1067, 1215, 1305, 1497
BfmI CTRYAG 4 cut(s) 950, 1422, 1485, 1614
BfuAI ACCTGC 1 cut(s) 319
BisI GCNGC 6 cut(s) 42, 163, 370, 425, 443, 1428
BlsI GCNGC 6 cut(s) 43, 164, 371, 426, 444, 1429
Bme18I GGWCC 6 cut(s) 182, 331, 355, 361, 430, 1187
BmeT110I CYCGRG 1 cut(s) 351
BmgT120I GGNCC 7 cut(s) 182, 331, 349, 355, 361, 430, 1187
BmiI GGNNCC 5 cut(s) 183, 184, 356, 362, 1575
BmsI GCATC 3 cut(s) 285, 1378, 1498
BpiI GAAGAC 1 cut(s) 305
BpmI CTGGAG 2 cut(s) 302, 1270
Bpu10I CCTNAGC 1 cut(s) 437
BpuEI CTTGAG 1 cut(s) 431
BpuMI CCSGG 7 cut(s) 224, 347, 352, 353, 359, 517, 792
BsaAI YACGTR 1 cut(s) 391
BsaBI GATNNNNATC 1 cut(s) 1359
BsaHI GRCGYC 1 cut(s) 176
BsaJI CCNNGG 6 cut(s) 139, 351, 516, 709, 791, 1132
BsaWI WCCGGW 2 cut(s) 402, 1189
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 4 cut(s) 17, 1126, 1254, 1521
Bse21I CCTNAGG 1 cut(s) 1461
Bse3DI GCAATG 1 cut(s) 1099
Bse8I GATNNNNATC 1 cut(s) 1359
BseAI TCCGGA 2 cut(s) 402, 1189
BseBI CCWGG 3 cut(s) 140, 936, 1288
BseDI CCNNGG 6 cut(s) 139, 351, 516, 709, 791, 1132
BseGI GGATG 4 cut(s) 256, 1372, 1393, 1525
BseJI GATNNNNATC 1 cut(s) 1359
BseMI GCAATG 1 cut(s) 1099
BseMII CTCAG 2 cut(s) 428, 1452
BseNI ACTGG 4 cut(s) 17, 1126, 1254, 1521
BseRI GAGGAG 2 cut(s) 111, 740
BseXI GCAGC 4 cut(s) 53, 436, 454, 1439
BseYI CCCAGC 1 cut(s) 581
BshFI GGCC 3 cut(s) 350, 934, 1327
BsiHKAI GWGCWC 1 cut(s) 648
BsiHKCI CYCGRG 1 cut(s) 351
BsiSI CCGG 9 cut(s) 159, 224, 347, 352, 358, 403, 516, 791, 1190
BslFI GGGAC 7 cut(s) 168, 368, 374, 728, 808, 815, 1037
BsmAI GTCTC 4 cut(s) 51, 774, 1112, 1368
BsmBI CGTCTC 1 cut(s) 1368
BsmFI GGGAC 7 cut(s) 168, 368, 374, 728, 808, 815, 1037
BsnI GGCC 3 cut(s) 350, 934, 1327
BsoBI CYCGRG 1 cut(s) 351
Bsp1286I GDGCHC 2 cut(s) 648, 1559
Bsp13I TCCGGA 2 cut(s) 402, 1189
Bsp143I GATC 5 cut(s) 1040, 1262, 1360, 1471, 1618
Bsp19I CCATGG 1 cut(s) 709
BspACI CCGC 7 cut(s) 71, 162, 274, 370, 1055, 1071, 1077
BspANI GGCC 3 cut(s) 350, 934, 1327
BspCNI CTCAG 2 cut(s) 429, 1453
BspEI TCCGGA 2 cut(s) 402, 1189
BspHI TCATGA 2 cut(s) 753, 1318
BspLI GGNNCC 5 cut(s) 183, 184, 356, 362, 1575
BspMAI CTGCAG 1 cut(s) 1618
BspMI ACCTGC 1 cut(s) 319
BspPI GGATC 3 cut(s) 1035, 1368, 1466
BsrDI GCAATG 1 cut(s) 1099
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 4 cut(s) 17, 1126, 1254, 1521
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 6 cut(s) 139, 351, 516, 709, 791, 1132
BssMI GATC 5 cut(s) 1040, 1262, 1360, 1471, 1618
BssNAI GTATAC 1 cut(s) 1083
BssNI GRCGYC 1 cut(s) 176
BssSI CACGAG 1 cut(s) 674
BssT1I CCWWGG 2 cut(s) 709, 1132
Bst1107I GTATAC 1 cut(s) 1083
Bst2BI CACGAG 1 cut(s) 674
Bst2UI CCWGG 3 cut(s) 140, 936, 1288
Bst4CI ACNGT 3 cut(s) 719, 760, 954
Bst6I CTCTTC 4 cut(s) 49, 94, 1206, 1429
BstACI GRCGYC 1 cut(s) 176
BstBAI YACGTR 1 cut(s) 391
BstC8I GCNNGC 5 cut(s) 71, 174, 648, 1299, 1614
BstDEI CTNAG 3 cut(s) 437, 600, 1461
BstDSI CCRYGG 1 cut(s) 709
BstF5I GGATG 4 cut(s) 256, 1372, 1393, 1525
BstHHI GCGC 3 cut(s) 41, 201, 1538
BstKTI GATC 5 cut(s) 1043, 1265, 1363, 1474, 1621
BstMAI GTCTC 4 cut(s) 51, 774, 1112, 1368
BstMBI GATC 5 cut(s) 1040, 1262, 1360, 1471, 1618
BstMWI GCNNNNNNNGC 6 cut(s) 198, 207, 299, 433, 442, 1136
BstNI CCWGG 3 cut(s) 140, 936, 1288
BstNSI RCATGY 2 cut(s) 328, 1301
BstSFI CTRYAG 4 cut(s) 950, 1422, 1485, 1614
BstV1I GCAGC 4 cut(s) 53, 436, 454, 1439
BstV2I GAAGAC 1 cut(s) 305
BstX2I RGATCY 2 cut(s) 1040, 1471
BstYI RGATCY 2 cut(s) 1040, 1471
BstZ17I GTATAC 1 cut(s) 1083
Bsu36I CCTNAGG 1 cut(s) 1461
BsuRI GGCC 3 cut(s) 350, 934, 1327
BtgI CCRYGG 1 cut(s) 709
BtsCI GGATG 4 cut(s) 256, 1372, 1393, 1525
BtsIMutI CAGTG 1 cut(s) 959
BveI ACCTGC 1 cut(s) 319
Cac8I GCNNGC 5 cut(s) 71, 174, 648, 1299, 1614
CaiI CAGNNNCTG 1 cut(s) 1249
CciI TCATGA 2 cut(s) 753, 1318
CfoI GCGC 3 cut(s) 41, 201, 1538
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 7 cut(s) 182, 331, 349, 355, 361, 430, 1187
Cfr9I CCCGGG 1 cut(s) 351
CseI GACGC 1 cut(s) 165
Csp6I GTAC 3 cut(s) 95, 493, 820
CviQI GTAC 3 cut(s) 95, 493, 820
DdeI CTNAG 3 cut(s) 437, 600, 1461
DpnI GATC 5 cut(s) 1042, 1264, 1362, 1473, 1620
DpnII GATC 5 cut(s) 1040, 1262, 1360, 1471, 1618
DraIII CACNNNGTG 1 cut(s) 1307
Eam1104I CTCTTC 4 cut(s) 49, 94, 1206, 1429
EarI CTCTTC 4 cut(s) 49, 94, 1206, 1429
Eco130I CCWWGG 2 cut(s) 709, 1132
Eco147I AGGCCT 2 cut(s) 934, 1327
Eco24I GRGCYC 1 cut(s) 1559
Eco32I GATATC 1 cut(s) 703
Eco47I GGWCC 6 cut(s) 182, 331, 355, 361, 430, 1187
Eco57I CTGAAG 1 cut(s) 1277
Eco81I CCTNAGG 1 cut(s) 1461
Eco88I CYCGRG 1 cut(s) 351
EcoO109I RGGNCCY 3 cut(s) 182, 331, 361
EcoRI GAATTC 2 cut(s) 1234, 1492
EcoRII CCWGG 3 cut(s) 138, 934, 1286
EcoRV GATATC 1 cut(s) 703
EcoT14I CCWWGG 2 cut(s) 709, 1132
EcoT38I GRGCYC 1 cut(s) 1559
ErhI CCWWGG 2 cut(s) 709, 1132
Esp3I CGTCTC 1 cut(s) 1368
FaqI GGGAC 7 cut(s) 168, 368, 374, 728, 808, 815, 1037
FauI CCCGC 3 cut(s) 78, 1062, 1070
FblI GTMKAC 1 cut(s) 1082
Fnu4HI GCNGC 6 cut(s) 42, 163, 370, 425, 443, 1428
FokI GGATG 4 cut(s) 243, 1379, 1400, 1532
FriOI GRGCYC 1 cut(s) 1559
Fsp4HI GCNGC 6 cut(s) 42, 163, 370, 425, 443, 1428
FspBI CTAG 5 cut(s) 51, 1067, 1215, 1305, 1497
FspI TGCGCA 1 cut(s) 40
GlaI GCGC 3 cut(s) 40, 200, 1537
GluI GCNGC 6 cut(s) 42, 163, 370, 425, 443, 1428
GsaI CCCAGC 1 cut(s) 585
GsuI CTGGAG 2 cut(s) 302, 1270
HaeIII GGCC 3 cut(s) 350, 934, 1327
HapII CCGG 9 cut(s) 159, 224, 347, 352, 358, 403, 516, 791, 1190
HgaI GACGC 1 cut(s) 165
HhaI GCGC 3 cut(s) 41, 201, 1538
Hin1I GRCGYC 1 cut(s) 176
Hin6I GCGC 3 cut(s) 39, 199, 1536
HinP1I GCGC 3 cut(s) 39, 199, 1536
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HindIII AAGCTT 1 cut(s) 612
HinfI GANTC 4 cut(s) 547, 965, 1394, 1598
HpaI GTTAAC 1 cut(s) 31
HpaII CCGG 9 cut(s) 159, 224, 347, 352, 358, 403, 516, 791, 1190
Hpy166II GTNNAC 4 cut(s) 22, 31, 694, 1083
Hpy188I TCNGA 7 cut(s) 261, 281, 507, 1399, 1476, 1605, 1623
Hpy8I GTNNAC 4 cut(s) 22, 31, 694, 1083
Hpy99I CGWCG 3 cut(s) 181, 191, 386
HpyAV CCTTC 3 cut(s) 92, 907, 1054
HpyCH4III ACNGT 3 cut(s) 719, 760, 954
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 5 cut(s) 328, 592, 1301, 1511, 1616
HpyF10VI GCNNNNNNNGC 6 cut(s) 198, 207, 299, 433, 442, 1136
HpyF3I CTNAG 3 cut(s) 437, 600, 1461
HpySE526I ACGT 1 cut(s) 390
Hsp92I GRCGYC 1 cut(s) 176
HspAI GCGC 3 cut(s) 39, 199, 1536
KflI GGGWCCC 1 cut(s) 182
Kpn2I TCCGGA 2 cut(s) 402, 1189
KspAI GTTAAC 1 cut(s) 31
Kzo9I GATC 5 cut(s) 1040, 1262, 1360, 1471, 1618
LmnI GCTCC 4 cut(s) 405, 1136, 1405, 1481
Lsp1109I GCAGC 4 cut(s) 53, 436, 454, 1439
LweI GCATC 3 cut(s) 285, 1378, 1498
MaeI CTAG 5 cut(s) 51, 1067, 1215, 1305, 1497
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 1 cut(s) 1245
MalI GATC 5 cut(s) 1042, 1264, 1362, 1473, 1620
MboI GATC 5 cut(s) 1040, 1262, 1360, 1471, 1618
MboII GAAGA 7 cut(s) 66, 81, 305, 1193, 1265, 1364, 1446
MflI RGATCY 2 cut(s) 1040, 1471
MhlI GDGCHC 2 cut(s) 648, 1559
MluCI AATT 9 cut(s) 235, 574, 773, 867, 1143, 1234, 1313, 1492, 1524
MroI TCCGGA 2 cut(s) 402, 1189
MseI TTAA 5 cut(s) 30, 573, 666, 996, 1467
MslI CAYNNNNRTG 1 cut(s) 281
MspA1I CMGCKG 2 cut(s) 44, 436
MspI CCGG 9 cut(s) 159, 224, 347, 352, 358, 403, 516, 791, 1190
MvaI CCWGG 3 cut(s) 140, 936, 1288
MwoI GCNNNNNNNGC 6 cut(s) 198, 207, 299, 433, 442, 1136
NciI CCSGG 7 cut(s) 224, 347, 352, 353, 359, 517, 792
NcoI CCATGG 1 cut(s) 709
NdeII GATC 5 cut(s) 1040, 1262, 1360, 1471, 1618
NlaIV GGNNCC 5 cut(s) 183, 184, 356, 362, 1575
NsbI TGCGCA 1 cut(s) 40
NspI RCATGY 2 cut(s) 328, 1301
PaeI GCATGC 1 cut(s) 1301
PagI TCATGA 2 cut(s) 753, 1318
PceI AGGCCT 2 cut(s) 934, 1327
PfeI GAWTC 4 cut(s) 547, 965, 1394, 1598
PflFI GACNNNGTC 1 cut(s) 749
PkrI GCNGC 6 cut(s) 43, 164, 371, 426, 444, 1429
Ppu21I YACGTR 1 cut(s) 391
PpuMI RGGWCCY 3 cut(s) 182, 331, 361
PshBI ATTAAT 1 cut(s) 573
Psp5II RGGWCCY 3 cut(s) 182, 331, 361
Psp6I CCWGG 3 cut(s) 138, 934, 1286
PspFI CCCAGC 1 cut(s) 581
PspGI CCWGG 3 cut(s) 138, 934, 1286
PspN4I GGNNCC 5 cut(s) 183, 184, 356, 362, 1575
PspPI GGNCC 7 cut(s) 182, 331, 349, 355, 361, 430, 1187
PspPPI RGGWCCY 3 cut(s) 182, 331, 361
PstI CTGCAG 1 cut(s) 1618
PstNI CAGNNNCTG 1 cut(s) 1249
PsuI RGATCY 2 cut(s) 1040, 1471
PsyI GACNNNGTC 1 cut(s) 749
PvuII CAGCTG 2 cut(s) 44, 436
RsaI GTAC 3 cut(s) 96, 494, 821
RsaNI GTAC 3 cut(s) 95, 493, 820
RseI CAYNNNNRTG 1 cut(s) 281
SaqAI TTAA 5 cut(s) 30, 573, 666, 996, 1467
SatI GCNGC 6 cut(s) 42, 163, 370, 425, 443, 1428
Sau3AI GATC 5 cut(s) 1040, 1262, 1360, 1471, 1618
Sau96I GGNCC 7 cut(s) 182, 331, 349, 355, 361, 430, 1187
SduI GDGCHC 2 cut(s) 648, 1559
SfaNI GCATC 3 cut(s) 285, 1378, 1498
SfcI CTRYAG 4 cut(s) 950, 1422, 1485, 1614
SgrAI CRCCGGYG 1 cut(s) 158
SinI GGWCC 6 cut(s) 182, 331, 355, 361, 430, 1187
SmaI CCCGGG 1 cut(s) 353
SmiMI CAYNNNNRTG 1 cut(s) 281
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
SphI GCATGC 1 cut(s) 1301
Sse9I AATT 9 cut(s) 235, 574, 773, 867, 1143, 1234, 1313, 1492, 1524
SseBI AGGCCT 2 cut(s) 934, 1327
SsiI CCGC 7 cut(s) 71, 162, 274, 370, 1055, 1071, 1077
SspMI CTAG 5 cut(s) 51, 1067, 1215, 1305, 1497
StuI AGGCCT 2 cut(s) 934, 1327
StyI CCWWGG 2 cut(s) 709, 1132
TaaI ACNGT 3 cut(s) 719, 760, 954
TaiI ACGT 1 cut(s) 393
TaqI TCGA 1 cut(s) 569
TasI AATT 9 cut(s) 235, 574, 773, 867, 1143, 1234, 1313, 1492, 1524
TatI WGTACW 2 cut(s) 94, 492
TauI GCSGC 2 cut(s) 165, 372
TfiI GAWTC 4 cut(s) 547, 965, 1394, 1598
Tru1I TTAA 5 cut(s) 30, 573, 666, 996, 1467
Tru9I TTAA 5 cut(s) 30, 573, 666, 996, 1467
TscAI CASTG 1 cut(s) 959
TseI GCWGC 4 cut(s) 41, 424, 442, 1427
TspDTI ATGAA 7 cut(s) 17, 278, 758, 1193, 1307, 1335, 1536
TspMI CCCGGG 1 cut(s) 351
TspRI CASTG 1 cut(s) 959
Tth111I GACNNNGTC 1 cut(s) 749
VpaK11BI GGWCC 6 cut(s) 182, 331, 355, 361, 430, 1187
VspI ATTAAT 1 cut(s) 573
XapI RAATTY 3 cut(s) 773, 1234, 1492
XbaI TCTAGA 1 cut(s) 1496
XceI RCATGY 2 cut(s) 328, 1301
XmaI CCCGGG 1 cut(s) 351
XmiI GTMKAC 1 cut(s) 1082
XspI CTAG 5 cut(s) 51, 1067, 1215, 1305, 1497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.