Rorug06G0143400

Belongs to the histone deacetylase family. HD Type 1 subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0006237
Physical Location & Seq
Reverse (-)
20374348 .. 20380006
5659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0143400.1

Sequence Viewer

Length: 1644 bp
ATGAATCTGAAAACCATGGCGCTCCATTCCCACACTACTCACCTCCAAACCCATAAGCGCTTGTCTCACCCTTCAATCTTGTACAACCCATTTCACACCTCTCACCGCAGCTCTGTTCGTTACGCCGTTAAGCCGCGAAGTTTTGGTGCTTTGGTGGCGAAAAGCGAGCGTGGCAATGGACGGCTGATCACGGCGTGCATTGCTGGCGGTAATGCTGACGCATTTGAAGAGGAAGAGGAGCAAGTGGTGGTGGAGGTCGTGGGTTCGAAGAAGGAGGAGTTGGTGGAGCAAAGCCTGTGGAAGCAGGTGAAGGACATTGTCATGTTTTCGGGTCCGGCCACCGGGTTGTGGATTTGTGGGCCGTTGATGAGTCTCATCTCCACCGCTGTTATTGGCCAGGCTAGCTCTACTGAGCTTGCTGCTTTGGGTCCGGGAACTGTCTTCTGTGATAACATGAATCTTTTGTTCATGTTCCTTTCGATTGCGACTTCTAATATGGTTGCCACTGCGCTTGCCAAAAGGGATAAAAAGGAACTGCAGCATCAGATATCTATCTTGCTCTTCATTGGATTGACTTGTGGAGTTCTGATGCTCTTGTTTACACAATTCCTTGGTTCATGGGCGCTAACAGCTTTTGCTGGGCCCAAGAATGTGCATATTATACCTGCAGCAAGCAAATATGTTCAGATTCGGGGGTTAGCGTGGCCTGCGATTCTTTTTGGATTGGTTGCTCAAAGCGCAAGTCTTGGCATGAAAGATTCATTGGGACCTTTAAAAGCTCTGGTGGTTGCCAGTGTTGTGAATGGCCTTGGTCATGTAGTCCTATGCAACTTGTTACACTATGGTATTACTGGTGCAGCATGGGCAACAATGGCATCGCAGATTGTTGCTGCTTGTATGATGATTGAAGCTCTGAACAAGAAAGGATTTAGTGCATTTTCCATCTCTGTTCCATCACCTCGTGAATGTCTGCAAATATTTGGGATTGCAGGTCCAGTGTTTGTAACAATGTTCTCAAAGGTGGCCTTCTACTCACTGATGACATACTTTGCTACTGCTATGGGTACAAATATAGTTGCTGCTCATCAGGTCATGATCCAAATGTACGGGATGTGTGTGGTATGGGGTGAGCCTCTTTCTCAAACTGCACAATCGTTTATGCCCGAGTTATTATACGGAGTTAACCGAAGTTTGGAGAAGGCCCGAATGCTGCTAAAGTCACTCGTAATTATTGGAGCTATTCTTGGATTGGCAATAGGGGTTATTGGGATGTCTGTTCCTTGGTTGTTCCCCAATATCTTTACATTTGACCTGAAAGTCATACAAGAGATGCACAAAGTATTGTTTCTGTTCTTCCTGTCGTTATCTATTACGCCCTGTACTCACAGCCTTGAGGGCACATTGCTGGCTGGACGTGATCTTACCTTCATCAGCTTGTCAATGAGCAGTTGTTTTTCCTTGGGTGCTCTTCTACTGTTGCTTGTGAACAGCAGAGGATTTGGTTTGCCAGGCTGCTGGTTTGCGCTTGTTGGCTTTCAATGGGCTCGATTTTTCCTTGCTCTCCGACGGCTTCTTTCTCCCAATGGTATGCTCCATTCAGAAGATGTGGGCTCGTATAAAGTGGGGAAGTTGAAAGCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0002376 GO:0003674 GO:0003824 GO:0004407 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006476 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009405 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0016575 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044764 GO:0045087 GO:0045892 GO:0045934 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098542 GO:0098732 GO:0140096 GO:1901564 GO:1902459 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000036 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04110 ko04213 ko04330 ko04919 ko05016 ko05034 ko05165 ko05169 ko05200 ko05202 ko05203 ko05220 map04110 map04213 map04330 map04919 map05016 map05034 map05165 map05169 map05200 map05202 map05203 map05220
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

547

Amino Acids

59.28

Weight (kDa)

9.24

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 119 - 268 3e-15 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 295
AasI GACNNNNNNGTC 1 cut(s) 1316
Acc36I ACCTGC 3 cut(s) 295, 673, 980
AccII CGCG 1 cut(s) 136
AciI CCGC 4 cut(s) 106, 134, 207, 384
AclWI GGATC 1 cut(s) 1090
AcoI YGGCCR 2 cut(s) 336, 394
AdeI CACNNNGTG 2 cut(s) 195, 962
AfaI GTAC 4 cut(s) 83, 1066, 1106, 1381
AfeI AGCGCT 1 cut(s) 59
AfiI CCNNNNNNNGG 3 cut(s) 341, 348, 1192
AgsI TTSAA 5 cut(s) 75, 227, 908, 1538, 1633
AjiI CACGTC 1 cut(s) 1415
AjnI CCWGG 2 cut(s) 396, 1507
AjuI GAANNNNNNNTTGG 4 cut(s) 263, 295, 746, 778
AluBI AGCT 9 cut(s) 111, 405, 415, 632, 779, 911, 1238, 1434, 1637
AluI AGCT 9 cut(s) 111, 405, 415, 632, 779, 911, 1238, 1434, 1637
Alw21I GWGCWC 1 cut(s) 1468
Alw26I GTCTC 2 cut(s) 69, 377
AlwI GGATC 1 cut(s) 1090
Ama87I CYCGRG 1 cut(s) 1163
Aor51HI AGCGCT 1 cut(s) 59
AoxI GGCC 8 cut(s) 336, 359, 394, 641, 704, 805, 1023, 1200
ApaI GGGCCC 1 cut(s) 645
ApeKI GCWGC 9 cut(s) 108, 419, 538, 668, 857, 890, 1079, 1210, 1512
ArsI GACNNNNNNTTYG 2 cut(s) 727, 759
AspLEI GCGC 6 cut(s) 22, 60, 511, 625, 740, 1525
AspS9I GGNCC 8 cut(s) 332, 359, 428, 641, 642, 767, 992, 1201
AsuC2I CCSGG 2 cut(s) 343, 432
AsuHPI GGTGA 6 cut(s) 32, 59, 95, 319, 948, 1139
AsuII TTCGAA 1 cut(s) 266
AsuNHI GCTAGC 1 cut(s) 401
AvaI CYCGRG 1 cut(s) 1163
AvaII GGWCC 4 cut(s) 332, 428, 767, 992
BaeGI GKGCMC 2 cut(s) 645, 1400
BalI TGGCCA 1 cut(s) 396
BanII GRGCYC 3 cut(s) 645, 1546, 1613
BauI CACGAG 1 cut(s) 960
BbsI GAAGAC 1 cut(s) 433
Bbv12I GWGCWC 1 cut(s) 1468
BbvI GCAGC 9 cut(s) 120, 406, 550, 680, 869, 877, 1066, 1197, 1499
BccI CCATC 2 cut(s) 950, 961
BceAI ACGGC 5 cut(s) 110, 197, 207, 346, 1583
BciT130I CCWGG 2 cut(s) 398, 1509
BclI TGATCA 1 cut(s) 186
BcnI CCSGG 2 cut(s) 343, 432
BcoDI GTCTC 2 cut(s) 69, 377
BfaI CTAG 1 cut(s) 402
BfmI CTRYAG 2 cut(s) 536, 666
BfoI RGCGCY 3 cut(s) 23, 61, 626
BfuAI ACCTGC 3 cut(s) 295, 673, 980
BglI GCCNNNNNGGC 1 cut(s) 1395
Bme1390I CCNGG 4 cut(s) 343, 398, 432, 1509
Bme18I GGWCC 4 cut(s) 332, 428, 767, 992
BmeT110I CYCGRG 1 cut(s) 1163
BmgBI CACGTC 1 cut(s) 1415
BmgT120I GGNCC 8 cut(s) 332, 359, 428, 641, 642, 767, 992, 1201
BmiI GGNNCC 4 cut(s) 333, 429, 643, 768
BmrFI CCNGG 4 cut(s) 343, 398, 432, 1509
BmsI GCATC 4 cut(s) 550, 579, 884, 1320
BmtI GCTAGC 1 cut(s) 405
BpiI GAAGAC 1 cut(s) 433
Bpu14I TTCGAA 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 1412
BpuMI CCSGG 2 cut(s) 343, 432
BsaBI GATNNNNATC 1 cut(s) 551
BsaJI CCNNGG 5 cut(s) 15, 610, 808, 1280, 1458
Bsc4I CCNNNNNNNGG 3 cut(s) 341, 348, 1192
Bse1I ACTGG 3 cut(s) 792, 856, 995
Bse3DI GCAATG 3 cut(s) 181, 198, 1400
Bse8I GATNNNNATC 1 cut(s) 551
BseBI CCWGG 2 cut(s) 398, 1509
BseDI CCNNGG 5 cut(s) 15, 610, 808, 1280, 1458
BseGI GGATG 2 cut(s) 1116, 1275
BseJI GATNNNNATC 1 cut(s) 551
BseLI CCNNNNNNNGG 3 cut(s) 341, 348, 1192
BseMI GCAATG 3 cut(s) 181, 198, 1400
BseMII CTCAG 1 cut(s) 402
BseNI ACTGG 3 cut(s) 792, 856, 995
BseRI GAGGAG 2 cut(s) 251, 290
BseSI GKGCMC 2 cut(s) 645, 1400
BseXI GCAGC 9 cut(s) 120, 406, 550, 680, 869, 877, 1066, 1197, 1499
BseYI CCCAGC 1 cut(s) 638
BsgI GTGCAG 2 cut(s) 876, 1131
Bsh1236I CGCG 1 cut(s) 136
BshFI GGCC 8 cut(s) 338, 361, 396, 643, 706, 807, 1025, 1202
BsiHKAI GWGCWC 1 cut(s) 1468
BsiHKCI CYCGRG 1 cut(s) 1163
BsiSI CCGG 3 cut(s) 335, 342, 431
BslFI GGGAC 1 cut(s) 780
BslI CCNNNNNNNGG 3 cut(s) 341, 348, 1192
BsmAI GTCTC 2 cut(s) 69, 377
BsmFI GGGAC 1 cut(s) 780
BsmI GAATGC 1 cut(s) 1212
BsnI GGCC 8 cut(s) 338, 361, 396, 643, 706, 807, 1025, 1202
BsoBI CYCGRG 1 cut(s) 1163
Bsp119I TTCGAA 1 cut(s) 266
Bsp120I GGGCCC 1 cut(s) 641
Bsp1286I GDGCHC 5 cut(s) 645, 1400, 1468, 1546, 1613
Bsp1407I TGTACA 1 cut(s) 81
Bsp143I GATC 3 cut(s) 186, 1095, 1417
Bsp19I CCATGG 1 cut(s) 15
BspACI CCGC 4 cut(s) 106, 134, 207, 384
BspANI GGCC 8 cut(s) 338, 361, 396, 643, 706, 807, 1025, 1202
BspCNI CTCAG 1 cut(s) 403
BspFNI CGCG 1 cut(s) 136
BspHI TCATGA 1 cut(s) 1092
BspLI GGNNCC 4 cut(s) 333, 429, 643, 768
BspMAI CTGCAG 2 cut(s) 540, 670
BspMI ACCTGC 3 cut(s) 295, 673, 980
BspOI GCTAGC 1 cut(s) 405
BspPI GGATC 1 cut(s) 1090
BspQI GCTCTTC 2 cut(s) 566, 1473
BspT104I TTCGAA 1 cut(s) 266
BsrDI GCAATG 3 cut(s) 181, 198, 1400
BsrGI TGTACA 1 cut(s) 81
BsrI ACTGG 3 cut(s) 792, 856, 995
BssECI CCNNGG 5 cut(s) 15, 610, 808, 1280, 1458
BssMI GATC 3 cut(s) 186, 1095, 1417
BssSI CACGAG 1 cut(s) 960
BssT1I CCWWGG 5 cut(s) 15, 610, 808, 1280, 1458
Bst2BI CACGAG 1 cut(s) 960
Bst2UI CCWGG 2 cut(s) 398, 1509
Bst4CI ACNGT 2 cut(s) 439, 1476
Bst6I CTCTTC 4 cut(s) 222, 228, 566, 1473
BstAUI TGTACA 1 cut(s) 81
BstBI TTCGAA 1 cut(s) 266
BstC8I GCNNGC 9 cut(s) 167, 196, 205, 403, 417, 513, 673, 708, 1407
BstDEI CTNAG 1 cut(s) 411
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 2 cut(s) 1116, 1275
BstFNI CGCG 1 cut(s) 136
BstH2I RGCGCY 3 cut(s) 23, 61, 626
BstHHI GCGC 6 cut(s) 22, 60, 511, 625, 740, 1525
BstKTI GATC 3 cut(s) 189, 1098, 1420
BstMAI GTCTC 2 cut(s) 69, 377
BstMBI GATC 3 cut(s) 186, 1095, 1417
BstNI CCWGG 2 cut(s) 398, 1509
BstSCI CCNGG 4 cut(s) 341, 396, 430, 1507
BstSFI CTRYAG 2 cut(s) 536, 666
BstSLI GKGCMC 2 cut(s) 645, 1400
BstUI CGCG 1 cut(s) 136
BstV1I GCAGC 9 cut(s) 120, 406, 550, 680, 869, 877, 1066, 1197, 1499
BstV2I GAAGAC 1 cut(s) 433
BstXI CCANNNNNNTGG 1 cut(s) 1515
BsuRI GGCC 8 cut(s) 338, 361, 396, 643, 706, 807, 1025, 1202
BtgI CCRYGG 1 cut(s) 15
BtgZI GCGATG 1 cut(s) 861
BtrI CACGTC 1 cut(s) 1415
BtsCI GGATG 2 cut(s) 1116, 1275
BtsI GCAGTG 1 cut(s) 504
BtsIMutI CAGTG 4 cut(s) 504, 799, 1002, 1034
BveI ACCTGC 3 cut(s) 295, 673, 980
Cac8I GCNNGC 9 cut(s) 167, 196, 205, 403, 417, 513, 673, 708, 1407
CciI TCATGA 1 cut(s) 1092
CfoI GCGC 6 cut(s) 22, 60, 511, 625, 740, 1525
Cfr13I GGNCC 8 cut(s) 332, 359, 428, 641, 642, 767, 992, 1201
CseI GACGC 1 cut(s) 227
Csp6I GTAC 4 cut(s) 82, 1065, 1105, 1380
CspCI CAANNNNNGTGG 4 cut(s) 278, 313, 493, 528
CviAII CATG 9 cut(s) 16, 322, 454, 469, 618, 751, 815, 861, 1093
CviQI GTAC 4 cut(s) 82, 1065, 1105, 1380
DdeI CTNAG 1 cut(s) 411
DpnI GATC 3 cut(s) 188, 1097, 1419
DpnII GATC 3 cut(s) 186, 1095, 1417
DraI TTTAAA 1 cut(s) 774
DraIII CACNNNGTG 2 cut(s) 195, 962
DrdI GACNNNNNNGTC 1 cut(s) 1316
DseDI GACNNNNNNGTC 1 cut(s) 1316
EaeI YGGCCR 2 cut(s) 336, 394
Eam1104I CTCTTC 4 cut(s) 222, 228, 566, 1473
EarI CTCTTC 4 cut(s) 222, 228, 566, 1473
Eco130I CCWWGG 5 cut(s) 15, 610, 808, 1280, 1458
Eco24I GRGCYC 3 cut(s) 645, 1546, 1613
Eco32I GATATC 1 cut(s) 549
Eco47I GGWCC 4 cut(s) 332, 428, 767, 992
Eco47III AGCGCT 1 cut(s) 59
Eco88I CYCGRG 1 cut(s) 1163
EcoO109I RGGNCCY 1 cut(s) 767
EcoRII CCWGG 2 cut(s) 396, 1507
EcoRV GATATC 1 cut(s) 549
EcoT14I CCWWGG 5 cut(s) 15, 610, 808, 1280, 1458
EcoT38I GRGCYC 3 cut(s) 645, 1546, 1613
ErhI CCWWGG 5 cut(s) 15, 610, 808, 1280, 1458
FaeI CATG 9 cut(s) 19, 325, 457, 472, 621, 754, 818, 864, 1096
FalI AAGNNNNNCTT 2 cut(s) 1010, 1042
FaqI GGGAC 1 cut(s) 780
FatI CATG 9 cut(s) 15, 321, 453, 468, 617, 750, 814, 860, 1092
FbaI TGATCA 1 cut(s) 186
FokI GGATG 2 cut(s) 1123, 1282
FriOI GRGCYC 3 cut(s) 645, 1546, 1613
FspBI CTAG 1 cut(s) 402
GlaI GCGC 6 cut(s) 21, 59, 510, 624, 739, 1524
GsaI CCCAGC 1 cut(s) 642
HaeII RGCGCY 3 cut(s) 23, 61, 626
HaeIII GGCC 8 cut(s) 338, 361, 396, 643, 706, 807, 1025, 1202
HapII CCGG 3 cut(s) 335, 342, 431
HgaI GACGC 1 cut(s) 227
HhaI GCGC 6 cut(s) 22, 60, 511, 625, 740, 1525
Hin1II CATG 9 cut(s) 19, 325, 457, 472, 621, 754, 818, 864, 1096
Hin6I GCGC 6 cut(s) 20, 58, 509, 623, 738, 1523
HinP1I GCGC 6 cut(s) 20, 58, 509, 623, 738, 1523
HincII GTYRAC 1 cut(s) 1183
HindII GTYRAC 1 cut(s) 1183
HinfI GANTC 6 cut(s) 4, 370, 457, 688, 712, 758
HpaI GTTAAC 1 cut(s) 1183
HpaII CCGG 3 cut(s) 335, 342, 431
HphI GGTGA 6 cut(s) 32, 59, 95, 319, 948, 1139
Hpy166II GTNNAC 3 cut(s) 600, 1183, 1486
Hpy188I TCNGA 7 cut(s) 9, 546, 588, 687, 915, 1565, 1600
Hpy188III TCNNGA 2 cut(s) 962, 1093
Hpy8I GTNNAC 3 cut(s) 600, 1183, 1486
Hpy99I CGWCG 1 cut(s) 1569
HpyAV CCTTC 6 cut(s) 81, 265, 304, 1036, 1192, 1435
HpyCH4III ACNGT 2 cut(s) 439, 1476
HpyCH4IV ACGT 1 cut(s) 1414
HpyF3I CTNAG 1 cut(s) 411
HpySE526I ACGT 1 cut(s) 1414
Hsp92II CATG 9 cut(s) 19, 325, 457, 472, 621, 754, 818, 864, 1096
HspAI GCGC 6 cut(s) 20, 58, 509, 623, 738, 1523
Ksp22I TGATCA 1 cut(s) 186
KspAI GTTAAC 1 cut(s) 1183
Kzo9I GATC 3 cut(s) 186, 1095, 1417
LguI GCTCTTC 2 cut(s) 566, 1473
LmnI GCTCC 5 cut(s) 27, 238, 286, 1235, 1596
Lsp1109I GCAGC 9 cut(s) 120, 406, 550, 680, 869, 877, 1066, 1197, 1499
LweI GCATC 4 cut(s) 550, 579, 884, 1320
MaeI CTAG 1 cut(s) 402
MaeII ACGT 1 cut(s) 1414
MaeIII GTNAC 4 cut(s) 119, 834, 1003, 1218
MalI GATC 3 cut(s) 188, 1097, 1419
MboI GATC 3 cut(s) 186, 1095, 1417
MboII GAAGA 8 cut(s) 239, 245, 280, 433, 553, 1345, 1460, 1613
MhlI GDGCHC 5 cut(s) 645, 1400, 1468, 1546, 1613
MlsI TGGCCA 1 cut(s) 396
MluCI AATT 2 cut(s) 605, 1227
MluNI TGGCCA 1 cut(s) 396
MlyI GAGTC 1 cut(s) 379
MmeI TCCRAC 1 cut(s) 1588
Mox20I TGGCCA 1 cut(s) 396
MscI TGGCCA 1 cut(s) 396
MseI TTAA 4 cut(s) 129, 773, 1182, 1642
MslI CAYNNNNRTG 1 cut(s) 320
Msp20I TGGCCA 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 3 cut(s) 335, 342, 431
MspR9I CCNGG 4 cut(s) 343, 398, 432, 1509
Mva1269I GAATGC 1 cut(s) 1212
MvaI CCWGG 2 cut(s) 398, 1509
MvnI CGCG 1 cut(s) 136
NciI CCSGG 2 cut(s) 343, 432
NcoI CCATGG 1 cut(s) 15
NdeII GATC 3 cut(s) 186, 1095, 1417
NheI GCTAGC 1 cut(s) 401
NlaIII CATG 9 cut(s) 19, 325, 457, 472, 621, 754, 818, 864, 1096
NlaIV GGNNCC 4 cut(s) 333, 429, 643, 768
NmuCI GTSAC 1 cut(s) 1218
NspV TTCGAA 1 cut(s) 266
PagI TCATGA 1 cut(s) 1092
PaqCI CACCTGC 1 cut(s) 295
PciSI GCTCTTC 2 cut(s) 566, 1473
PctI GAATGC 1 cut(s) 1212
PfeI GAWTC 5 cut(s) 4, 457, 688, 712, 758
PflFI GACNNNGTC 1 cut(s) 317
PfoI TCCNGGA 1 cut(s) 430
PleI GAGTC 1 cut(s) 378
PpsI GAGTC 1 cut(s) 378
PpuMI RGGWCCY 1 cut(s) 767
Psp5II RGGWCCY 1 cut(s) 767
Psp6I CCWGG 2 cut(s) 396, 1507
PspFI CCCAGC 1 cut(s) 638
PspGI CCWGG 2 cut(s) 396, 1507
PspN4I GGNNCC 4 cut(s) 333, 429, 643, 768
PspOMI GGGCCC 1 cut(s) 641
PspPI GGNCC 8 cut(s) 332, 359, 428, 641, 642, 767, 992, 1201
PspPPI RGGWCCY 1 cut(s) 767
PstI CTGCAG 2 cut(s) 540, 670
PsyI GACNNNGTC 1 cut(s) 317
RsaI GTAC 4 cut(s) 83, 1066, 1106, 1381
RsaNI GTAC 4 cut(s) 82, 1065, 1105, 1380
RseI CAYNNNNRTG 1 cut(s) 320
SapI GCTCTTC 2 cut(s) 566, 1473
SaqAI TTAA 4 cut(s) 129, 773, 1182, 1642
Sau3AI GATC 3 cut(s) 186, 1095, 1417
Sau96I GGNCC 8 cut(s) 332, 359, 428, 641, 642, 767, 992, 1201
SchI GAGTC 1 cut(s) 379
ScrFI CCNGG 4 cut(s) 343, 398, 432, 1509
SduI GDGCHC 5 cut(s) 645, 1400, 1468, 1546, 1613
SfaNI GCATC 4 cut(s) 550, 579, 884, 1320
SfcI CTRYAG 2 cut(s) 536, 666
SfuI TTCGAA 1 cut(s) 266
SinI GGWCC 4 cut(s) 332, 428, 767, 992
SmiMI CAYNNNNRTG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 1391
SmoI CTYRAG 1 cut(s) 1391
Sse9I AATT 2 cut(s) 605, 1227
SsiI CCGC 4 cut(s) 106, 134, 207, 384
SspI AATATT 1 cut(s) 978
SspMI CTAG 1 cut(s) 402
StyD4I CCNGG 4 cut(s) 341, 396, 430, 1507
StyI CCWWGG 5 cut(s) 15, 610, 808, 1280, 1458
TaaI ACNGT 2 cut(s) 439, 1476
TaiI ACGT 1 cut(s) 1417
TaqI TCGA 3 cut(s) 266, 479, 1546
TasI AATT 2 cut(s) 605, 1227
TatI WGTACW 2 cut(s) 81, 1379
TauI GCSGC 1 cut(s) 136
TfiI GAWTC 5 cut(s) 4, 457, 688, 712, 758
Tru1I TTAA 4 cut(s) 129, 773, 1182, 1642
Tru9I TTAA 4 cut(s) 129, 773, 1182, 1642
TscAI CASTG 4 cut(s) 511, 799, 1002, 1041
TseFI GTSAC 1 cut(s) 1218
TseI GCWGC 9 cut(s) 108, 419, 538, 668, 857, 890, 1079, 1210, 1512
Tsp45I GTSAC 1 cut(s) 1218
TspDTI ATGAA 8 cut(s) 17, 457, 470, 553, 606, 750, 767, 1417
TspGWI ACGGA 1 cut(s) 1191
TspRI CASTG 4 cut(s) 511, 799, 1002, 1041
Tth111I GACNNNGTC 1 cut(s) 317
VpaK11BI GGWCC 4 cut(s) 332, 428, 767, 992
XspI CTAG 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.