Belongs to the histone deacetylase family. HD Type 1 subfamily
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G38130 AT4G38130 |
| fragaria_vesca | FvH4_2g17240 FvH4_2g17240 FvH4_2g17240 |
| malus_domestica | MD05G1146000.v1.1 MD10G1145400.v1.1 |
| prunus_persica | Prupe.8G183700_v2.0.a1 Prupe.8G183700_v2.0.a1 Prupe.8G183700_v2.0.a1 |
| pyrus_communis | pycom05g14100 pycom10g12550 |
| rosa_chinensis | RchiOBHm_Chr6g0281731 |
| rosa_laevigata | RLG00000012940 |
| rosa_multiflora | Rmu_ssc0000126.1_g000063 |
| rosa_roxburghii | Rroxscaffold_7G00186870 |
| rosa_rugosa | Rorug06G0143000 Rorug06G0143100 Rorug06G0143200 Rorug06G0143300 Rorug06G0143400 Rorug06G0143500 |
| rosa_samantha | Rh6AG255800 Rh6BG258900 Rh6CG257800 Rh6DG249900 |
| rosa_wichuraiana | Rw6G022170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 439 |
| Acc36I | ACCTGC | 1 cut(s) | 443 |
| AccBSI | CCGCTC | 1 cut(s) | 476 |
| AccI | GTMKAC | 2 cut(s) | 1137, 1992 |
| AciI | CCGC | 3 cut(s) | 474, 778, 1572 |
| AclWI | GGATC | 4 cut(s) | 741, 1139, 1297, 2023 |
| AcoI | YGGCCR | 1 cut(s) | 779 |
| AcsI | RAATTY | 3 cut(s) | 1395, 1452, 1498 |
| AfaI | GTAC | 8 cut(s) | 106, 211, 385, 398, 926, 1010, 1343, 1578 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 289, 1239, 1981 |
| AflII | CTTAAG | 1 cut(s) | 1372 |
| AflIII | ACRYGT | 1 cut(s) | 999 |
| AjnI | CCWGG | 1 cut(s) | 865 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1386, 1418 |
| Alw21I | GWGCWC | 3 cut(s) | 756, 1303, 1370 |
| Alw26I | GTCTC | 4 cut(s) | 20, 150, 1335, 1569 |
| AlwI | GGATC | 4 cut(s) | 741, 1139, 1297, 2023 |
| Ama87I | CYCGRG | 1 cut(s) | 1604 |
| AoxI | GGCC | 4 cut(s) | 719, 779, 863, 949 |
| ApeKI | GCWGC | 3 cut(s) | 811, 932, 1685 |
| ApoI | RAATTY | 3 cut(s) | 1395, 1452, 1498 |
| AspLEI | GCGC | 1 cut(s) | 440 |
| AspS9I | GGNCC | 1 cut(s) | 561 |
| AsuHPI | GGTGA | 3 cut(s) | 713, 1127, 1238 |
| AvaI | CYCGRG | 1 cut(s) | 1604 |
| AvaII | GGWCC | 1 cut(s) | 561 |
| BanII | GRGCYC | 2 cut(s) | 756, 1370 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 302, 334 |
| BauI | CACGAG | 1 cut(s) | 1413 |
| BbsI | GAAGAC | 2 cut(s) | 1000, 1029 |
| Bbv12I | GWGCWC | 3 cut(s) | 756, 1303, 1370 |
| BbvI | GCAGC | 3 cut(s) | 823, 944, 1672 |
| BccI | CCATC | 4 cut(s) | 44, 1081, 1181, 1669 |
| BciT130I | CCWGG | 1 cut(s) | 867 |
| BciVI | GTATCC | 1 cut(s) | 1586 |
| BcoDI | GTCTC | 4 cut(s) | 20, 150, 1335, 1569 |
| BfaI | CTAG | 3 cut(s) | 6, 929, 1875 |
| BfmI | CTRYAG | 2 cut(s) | 93, 2034 |
| BfrI | CTTAAG | 1 cut(s) | 1372 |
| BfuAI | ACCTGC | 1 cut(s) | 443 |
| BfuI | GTATCC | 1 cut(s) | 1586 |
| BisI | GCNGC | 4 cut(s) | 779, 812, 933, 1686 |
| BlsI | GCNGC | 4 cut(s) | 780, 813, 934, 1687 |
| BmcAI | AGTACT | 1 cut(s) | 211 |
| Bme1390I | CCNGG | 1 cut(s) | 867 |
| Bme18I | GGWCC | 1 cut(s) | 561 |
| BmeT110I | CYCGRG | 1 cut(s) | 1604 |
| BmgT120I | GGNCC | 1 cut(s) | 561 |
| BmiI | GGNNCC | 1 cut(s) | 411 |
| BmrFI | CCNGG | 1 cut(s) | 867 |
| BmsI | GCATC | 6 cut(s) | 70, 771, 1170, 1441, 1792, 1899 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1000 |
| BpiI | GAAGAC | 2 cut(s) | 1000, 1029 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 32 |
| BsaAI | YACGTR | 3 cut(s) | 250, 396, 1154 |
| BsaI | GGTCTC | 2 cut(s) | 150, 1335 |
| BsaJI | CCNNGG | 1 cut(s) | 782 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 289, 1239, 1981 |
| Bse1I | ACTGG | 3 cut(s) | 413, 703, 1929 |
| Bse3DI | GCAATG | 1 cut(s) | 927 |
| BseBI | CCWGG | 1 cut(s) | 867 |
| BseDI | CCNNGG | 1 cut(s) | 782 |
| BseGI | GGATG | 2 cut(s) | 36, 85 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 289, 1239, 1981 |
| BseMI | GCAATG | 1 cut(s) | 927 |
| BseMII | CTCAG | 1 cut(s) | 1086 |
| BseNI | ACTGG | 3 cut(s) | 413, 703, 1929 |
| BseXI | GCAGC | 3 cut(s) | 823, 944, 1672 |
| BseYI | CCCAGC | 2 cut(s) | 1183, 1975 |
| BshFI | GGCC | 4 cut(s) | 721, 781, 865, 951 |
| BsiHKAI | GWGCWC | 3 cut(s) | 756, 1303, 1370 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1604 |
| BslFI | GGGAC | 1 cut(s) | 1177 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 289, 1239, 1981 |
| BsmAI | GTCTC | 4 cut(s) | 20, 150, 1335, 1569 |
| BsmFI | GGGAC | 1 cut(s) | 1177 |
| BsmI | GAATGC | 4 cut(s) | 773, 1671, 1711, 1720 |
| BsnI | GGCC | 4 cut(s) | 721, 781, 865, 951 |
| Bso31I | GGTCTC | 2 cut(s) | 150, 1335 |
| BsoBI | CYCGRG | 1 cut(s) | 1604 |
| Bsp1286I | GDGCHC | 3 cut(s) | 756, 1303, 1370 |
| Bsp143I | GATC | 5 cut(s) | 746, 1131, 1289, 2015, 2040 |
| Bsp19I | CCATGG | 1 cut(s) | 782 |
| BspACI | CCGC | 3 cut(s) | 474, 778, 1572 |
| BspANI | GGCC | 4 cut(s) | 721, 781, 865, 951 |
| BspCNI | CTCAG | 1 cut(s) | 1085 |
| BspLI | GGNNCC | 1 cut(s) | 411 |
| BspMI | ACCTGC | 1 cut(s) | 443 |
| BspPI | GGATC | 4 cut(s) | 741, 1139, 1297, 2023 |
| BspTI | CTTAAG | 1 cut(s) | 1372 |
| BspTNI | GGTCTC | 2 cut(s) | 150, 1335 |
| BsrBI | CCGCTC | 1 cut(s) | 476 |
| BsrDI | GCAATG | 1 cut(s) | 927 |
| BsrI | ACTGG | 3 cut(s) | 413, 703, 1929 |
| BssECI | CCNNGG | 1 cut(s) | 782 |
| BssMI | GATC | 5 cut(s) | 746, 1131, 1289, 2015, 2040 |
| BssNAI | GTATAC | 1 cut(s) | 1138 |
| BssSI | CACGAG | 1 cut(s) | 1413 |
| BssT1I | CCWWGG | 1 cut(s) | 782 |
| Bst1107I | GTATAC | 1 cut(s) | 1138 |
| Bst2BI | CACGAG | 1 cut(s) | 1413 |
| Bst2UI | CCWGG | 1 cut(s) | 867 |
| Bst4CI | ACNGT | 2 cut(s) | 61, 383 |
| Bst6I | CTCTTC | 2 cut(s) | 115, 394 |
| BstAFI | CTTAAG | 1 cut(s) | 1372 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 768, 1456 |
| BstBAI | YACGTR | 3 cut(s) | 250, 396, 1154 |
| BstC8I | GCNNGC | 1 cut(s) | 1299 |
| BstDEI | CTNAG | 2 cut(s) | 790, 1072 |
| BstDSI | CCRYGG | 1 cut(s) | 782 |
| BstF5I | GGATG | 2 cut(s) | 36, 85 |
| BstHHI | GCGC | 1 cut(s) | 440 |
| BstKTI | GATC | 5 cut(s) | 749, 1134, 1292, 2018, 2043 |
| BstMAI | GTCTC | 4 cut(s) | 20, 150, 1335, 1569 |
| BstMBI | GATC | 5 cut(s) | 746, 1131, 1289, 2015, 2040 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 768, 784, 1456 |
| BstNI | CCWGG | 1 cut(s) | 867 |
| BstNSI | RCATGY | 1 cut(s) | 1003 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1000 |
| BstSCI | CCNGG | 1 cut(s) | 865 |
| BstSFI | CTRYAG | 2 cut(s) | 93, 2034 |
| BstSNI | TACGTA | 2 cut(s) | 396, 1154 |
| BstV1I | GCAGC | 3 cut(s) | 823, 944, 1672 |
| BstV2I | GAAGAC | 2 cut(s) | 1000, 1029 |
| BstX2I | RGATCY | 1 cut(s) | 746 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1202 |
| BstYI | RGATCY | 1 cut(s) | 746 |
| BstZ17I | GTATAC | 1 cut(s) | 1138 |
| BsuI | GTATCC | 1 cut(s) | 1586 |
| BsuRI | GGCC | 4 cut(s) | 721, 781, 865, 951 |
| BtgI | CCRYGG | 1 cut(s) | 782 |
| BtsCI | GGATG | 2 cut(s) | 36, 85 |
| BtsIMutI | CAGTG | 3 cut(s) | 420, 1225, 1806 |
| BveI | ACCTGC | 1 cut(s) | 443 |
| Cac8I | GCNNGC | 1 cut(s) | 1299 |
| CfoI | GCGC | 1 cut(s) | 440 |
| Cfr13I | GGNCC | 1 cut(s) | 561 |
| Csp6I | GTAC | 8 cut(s) | 105, 210, 384, 397, 925, 1009, 1342, 1577 |
| CviQI | GTAC | 8 cut(s) | 105, 210, 384, 397, 925, 1009, 1342, 1577 |
| DdeI | CTNAG | 2 cut(s) | 790, 1072 |
| DpnI | GATC | 5 cut(s) | 748, 1133, 1291, 2017, 2042 |
| DpnII | GATC | 5 cut(s) | 746, 1131, 1289, 2015, 2040 |
| EaeI | YGGCCR | 1 cut(s) | 779 |
| Eam1104I | CTCTTC | 2 cut(s) | 115, 394 |
| EarI | CTCTTC | 2 cut(s) | 115, 394 |
| Ecl136II | GAGCTC | 2 cut(s) | 754, 1368 |
| Eco105I | TACGTA | 2 cut(s) | 396, 1154 |
| Eco130I | CCWWGG | 1 cut(s) | 782 |
| Eco147I | AGGCCT | 2 cut(s) | 721, 865 |
| Eco24I | GRGCYC | 2 cut(s) | 756, 1370 |
| Eco31I | GGTCTC | 2 cut(s) | 150, 1335 |
| Eco32I | GATATC | 1 cut(s) | 100 |
| Eco47I | GGWCC | 1 cut(s) | 561 |
| Eco53kI | GAGCTC | 2 cut(s) | 754, 1368 |
| Eco88I | CYCGRG | 1 cut(s) | 1604 |
| EcoICRI | GAGCTC | 2 cut(s) | 754, 1368 |
| EcoO109I | RGGNCCY | 1 cut(s) | 561 |
| EcoRII | CCWGG | 1 cut(s) | 865 |
| EcoRV | GATATC | 1 cut(s) | 100 |
| EcoT14I | CCWWGG | 1 cut(s) | 782 |
| EcoT38I | GRGCYC | 2 cut(s) | 756, 1370 |
| ErhI | CCWWGG | 1 cut(s) | 782 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1373, 1405, 1940, 1972 |
| FaqI | GGGAC | 1 cut(s) | 1177 |
| FauNDI | CATATG | 2 cut(s) | 405, 632 |
| FblI | GTMKAC | 2 cut(s) | 1137, 1992 |
| Fnu4HI | GCNGC | 4 cut(s) | 779, 812, 933, 1686 |
| FokI | GGATG | 2 cut(s) | 23, 92 |
| FriOI | GRGCYC | 2 cut(s) | 756, 1370 |
| Fsp4HI | GCNGC | 4 cut(s) | 779, 812, 933, 1686 |
| FspBI | CTAG | 3 cut(s) | 6, 929, 1875 |
| FspI | TGCGCA | 1 cut(s) | 439 |
| GlaI | GCGC | 1 cut(s) | 439 |
| GluI | GCNGC | 4 cut(s) | 779, 812, 933, 1686 |
| GsaI | CCCAGC | 2 cut(s) | 1187, 1979 |
| HaeIII | GGCC | 4 cut(s) | 721, 781, 865, 951 |
| HhaI | GCGC | 1 cut(s) | 440 |
| Hin6I | GCGC | 1 cut(s) | 438 |
| HinP1I | GCGC | 1 cut(s) | 438 |
| HincII | GTYRAC | 1 cut(s) | 1285 |
| HindII | GTYRAC | 1 cut(s) | 1285 |
| HinfI | GANTC | 5 cut(s) | 233, 293, 879, 1243, 2030 |
| HphI | GGTGA | 3 cut(s) | 713, 1127, 1238 |
| Hpy166II | GTNNAC | 7 cut(s) | 399, 672, 913, 1138, 1285, 1880, 1993 |
| Hpy188I | TCNGA | 8 cut(s) | 79, 238, 284, 306, 751, 1075, 1519, 1569 |
| Hpy188III | TCNNGA | 9 cut(s) | 6, 837, 1081, 1177, 1334, 1381, 1490, 1604, 1906 |
| Hpy8I | GTNNAC | 7 cut(s) | 399, 672, 913, 1138, 1285, 1880, 1993 |
| Hpy99I | CGWCG | 2 cut(s) | 79, 1496 |
| HpyCH4III | ACNGT | 2 cut(s) | 61, 383 |
| HpyCH4IV | ACGT | 4 cut(s) | 74, 249, 395, 1153 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 768, 784, 1456 |
| HpyF3I | CTNAG | 2 cut(s) | 790, 1072 |
| HpySE526I | ACGT | 4 cut(s) | 74, 249, 395, 1153 |
| HspAI | GCGC | 1 cut(s) | 438 |
| Kzo9I | GATC | 5 cut(s) | 746, 1131, 1289, 2015, 2040 |
| LmnI | GCTCC | 5 cut(s) | 329, 481, 897, 1373, 1606 |
| Lsp1109I | GCAGC | 3 cut(s) | 823, 944, 1672 |
| LweI | GCATC | 6 cut(s) | 70, 771, 1170, 1441, 1792, 1899 |
| MaeI | CTAG | 3 cut(s) | 6, 929, 1875 |
| MaeII | ACGT | 4 cut(s) | 74, 249, 395, 1153 |
| MaeIII | GTNAC | 2 cut(s) | 343, 430 |
| MalI | GATC | 5 cut(s) | 748, 1133, 1291, 2017, 2042 |
| MbiI | CCGCTC | 1 cut(s) | 476 |
| MboI | GATC | 5 cut(s) | 746, 1131, 1289, 2015, 2040 |
| MfeI | CAATTG | 1 cut(s) | 1769 |
| MflI | RGATCY | 1 cut(s) | 746 |
| MhlI | GDGCHC | 3 cut(s) | 756, 1303, 1370 |
| MmeI | TCCRAC | 2 cut(s) | 57, 378 |
| MseI | TTAA | 4 cut(s) | 587, 716, 1254, 1373 |
| MslI | CAYNNNNRTG | 7 cut(s) | 404, 1004, 1055, 1178, 1254, 1855, 1865 |
| MspCI | CTTAAG | 1 cut(s) | 1372 |
| MspR9I | CCNGG | 1 cut(s) | 867 |
| MunI | CAATTG | 1 cut(s) | 1769 |
| Mva1269I | GAATGC | 4 cut(s) | 773, 1671, 1711, 1720 |
| MvaI | CCWGG | 1 cut(s) | 867 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 768, 784, 1456 |
| NcoI | CCATGG | 1 cut(s) | 782 |
| NdeI | CATATG | 2 cut(s) | 405, 632 |
| NdeII | GATC | 5 cut(s) | 746, 1131, 1289, 2015, 2040 |
| NlaIV | GGNNCC | 1 cut(s) | 411 |
| NmuCI | GTSAC | 1 cut(s) | 430 |
| NsbI | TGCGCA | 1 cut(s) | 439 |
| NspI | RCATGY | 1 cut(s) | 1003 |
| PceI | AGGCCT | 2 cut(s) | 721, 865 |
| PciI | ACATGT | 1 cut(s) | 999 |
| PctI | GAATGC | 4 cut(s) | 773, 1671, 1711, 1720 |
| PfeI | GAWTC | 5 cut(s) | 233, 293, 879, 1243, 2030 |
| PkrI | GCNGC | 4 cut(s) | 780, 813, 934, 1687 |
| Ppu21I | YACGTR | 3 cut(s) | 250, 396, 1154 |
| PpuMI | RGGWCCY | 1 cut(s) | 561 |
| PscI | ACATGT | 1 cut(s) | 999 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1000 |
| Psp124BI | GAGCTC | 2 cut(s) | 756, 1370 |
| Psp5II | RGGWCCY | 1 cut(s) | 561 |
| Psp6I | CCWGG | 1 cut(s) | 865 |
| PspFI | CCCAGC | 2 cut(s) | 1183, 1975 |
| PspGI | CCWGG | 1 cut(s) | 865 |
| PspN4I | GGNNCC | 1 cut(s) | 411 |
| PspPI | GGNCC | 1 cut(s) | 561 |
| PspPPI | RGGWCCY | 1 cut(s) | 561 |
| PsuI | RGATCY | 1 cut(s) | 746 |
| RsaI | GTAC | 8 cut(s) | 106, 211, 385, 398, 926, 1010, 1343, 1578 |
| RsaNI | GTAC | 8 cut(s) | 105, 210, 384, 397, 925, 1009, 1342, 1577 |
| RseI | CAYNNNNRTG | 7 cut(s) | 404, 1004, 1055, 1178, 1254, 1855, 1865 |
| SacI | GAGCTC | 2 cut(s) | 756, 1370 |
| SaqAI | TTAA | 4 cut(s) | 587, 716, 1254, 1373 |
| SatI | GCNGC | 4 cut(s) | 779, 812, 933, 1686 |
| Sau3AI | GATC | 5 cut(s) | 746, 1131, 1289, 2015, 2040 |
| Sau96I | GGNCC | 1 cut(s) | 561 |
| ScaI | AGTACT | 1 cut(s) | 211 |
| ScrFI | CCNGG | 1 cut(s) | 867 |
| SduI | GDGCHC | 3 cut(s) | 756, 1303, 1370 |
| SfaNI | GCATC | 6 cut(s) | 70, 771, 1170, 1441, 1792, 1899 |
| SfcI | CTRYAG | 2 cut(s) | 93, 2034 |
| SinI | GGWCC | 1 cut(s) | 561 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 404, 1004, 1055, 1178, 1254, 1855, 1865 |
| SmlI | CTYRAG | 1 cut(s) | 1372 |
| SmoI | CTYRAG | 1 cut(s) | 1372 |
| SnaBI | TACGTA | 2 cut(s) | 396, 1154 |
| SseBI | AGGCCT | 2 cut(s) | 721, 865 |
| SsiI | CCGC | 3 cut(s) | 474, 778, 1572 |
| SspI | AATATT | 1 cut(s) | 515 |
| SspMI | CTAG | 3 cut(s) | 6, 929, 1875 |
| SstI | GAGCTC | 2 cut(s) | 756, 1370 |
| StuI | AGGCCT | 2 cut(s) | 721, 865 |
| StyD4I | CCNGG | 1 cut(s) | 865 |
| StyI | CCWWGG | 1 cut(s) | 782 |
| TaaI | ACNGT | 2 cut(s) | 61, 383 |
| TaiI | ACGT | 4 cut(s) | 77, 252, 398, 1156 |
| TaqI | TCGA | 6 cut(s) | 145, 765, 1422, 1435, 1491, 1905 |
| TatI | WGTACW | 2 cut(s) | 209, 1341 |
| TauI | GCSGC | 1 cut(s) | 781 |
| TfiI | GAWTC | 5 cut(s) | 233, 293, 879, 1243, 2030 |
| Tru1I | TTAA | 4 cut(s) | 587, 716, 1254, 1373 |
| Tru9I | TTAA | 4 cut(s) | 587, 716, 1254, 1373 |
| TscAI | CASTG | 3 cut(s) | 420, 1225, 1813 |
| TseFI | GTSAC | 1 cut(s) | 430 |
| TseI | GCWGC | 3 cut(s) | 811, 932, 1685 |
| Tsp45I | GTSAC | 1 cut(s) | 430 |
| TspDTI | ATGAA | 8 cut(s) | 654, 1306, 1492, 1743, 1791, 1830, 1835, 1883 |
| TspGWI | ACGGA | 1 cut(s) | 1302 |
| TspRI | CASTG | 3 cut(s) | 420, 1225, 1813 |
| Vha464I | CTTAAG | 1 cut(s) | 1372 |
| VpaK11BI | GGWCC | 1 cut(s) | 561 |
| XapI | RAATTY | 3 cut(s) | 1395, 1452, 1498 |
| XbaI | TCTAGA | 1 cut(s) | 5 |
| XceI | RCATGY | 1 cut(s) | 1003 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 610, 1180 |
| XmiI | GTMKAC | 2 cut(s) | 1137, 1992 |
| XspI | CTAG | 3 cut(s) | 6, 929, 1875 |
| ZrmI | AGTACT | 1 cut(s) | 211 |