Rorug06G0143100

Belongs to the histone deacetylase family. HD Type 1 subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0006237
Physical Location & Seq
Forward (+)
20355033 .. 20357101
2069 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0143100.1

Sequence Viewer

Length: 1926 bp
ATGGGTCCACAAGCGCCAGTGTTACATCATCTCTTCTTTGCGGATGATAGCCTTCTTTTTGGTGCAGCTACTTTGGAGGAATGTAGGACCTTCAAAGGAATTCTTGATACTTATGAACAAGCCTCTGGACAAAAGGTAAATTTTAGTAAAAGCAGTGTTGTGTTCAGCACTAATGTGCAGCCTCATCTCAAGGAAGTTCTAGCTGCGGTGTTGAATGTCACATGTGTTGATGAACATGATCAGTATCTTGGTCTACCTTTACGAGTAGGAAAATCCAAGACAGCTAGGTTTCAGTACTTGAAAGAAAAAGTCTCCAAAAAGCTCGTGCATTGGAAGTCAAAATTTCTGAGTAGTGCGGGTAAGGAAATTCTCATTAAAGTCGTTGCTCAGGTAATGCCAACCTATGCTATGAATTGTTATCTTCTCCCAAAAAGCTTGTGTGATGACATCCATAAACTCTGTGCTTCCTTCTTCTGGGGTGACATGGAGGGCAAGCGAAAAATCCATTGGAGAAGCTGGGAAAAACTTTGCTTAACTAAGCATGAAGGTGGCTTGGGATTCAAGAACATTTATGCCTACAATCTTGCCATGTTAGCCAAGCAAGGGTGGAGGCTCATCACCAGACCTAACTCGCTTATAGCTCAAGTGCTCAAGGCTCGGTACTTTCCCCATTGCTCCTTTTGGGATGCCAATTTAGGTGATGCACCGTCTTATTCCTGGAGAAGTATTTTGGAAAGTAGATCATTACTCAAAGCTAGTACTTCGTGGAGAAAACCGGTGCACACTCTCCTTGAGACAGTAGCAGACCTCATTGATCCTACATCTAGAACCTGGATTTCCACCTTGGTTCATACTTTATTTAGCCCTCAGGTGGTTGCCAGTATTTTGTGCATTCCATTGCGACATCATCCTATTCCTGATAAAAGATGTTGGACCCCTGAAAAGAGAGGGTTATTTACGGTGAAAAGTGCCTACTGGATCGCTAGGCAGCAGGTGCTCGAAAATACGTTAGCTTCATCCTCGACGGGTGATCCTTTTCTGATGCTATGGAAATGTATTTGGAAGGCCAAGATACCAGGGAAAGTTCAAATATGTTGCTGGAGGGCGGTTAATAACTTGCTACCTACAAGGGAACAACTTTCGAAGAGAGGTTATGATGGAGAAATGGGATGCTTACTCTGCAATTACAGAATGGAGAGCTCAGATCATCTGTTTTGCAAATGTCCTACTGCTACATCATTACTTTCAGGTACCCCGTTCTTGTTACAGTCCTCTATTCTACCCAACTTGGACTTTAAGGAATGGATGTTAGAACGAGCTCTTACTTTGAAGCCACAAATTTTTGAGAAGCTTCTTATGATTATCTGGGGTTTATGGAAGAATAGAAATAACAAGTTGTGGGAAGATAATGCTCAGTCTCCGAATGATATTATGCCAGGGTGTTTATCATGGTTGAATGAGTTCCAACAAGCTCGCAAGATGCCTACTGCAAGGACCCAAGCTGGGGTTCATCGATGGAAACCTGCAAAGATCCTCAAGCTTAATGTGGATGGTGCGTTTGCATCTCAGTTTTCACATGGAGGCACAGGCAGCGTTCTAAGAAGTTCCACTGGCAGCTTTGTTGCTGCCTTCATGAAGCCCGTGCACCATCAGGCAGTCATTGAAACTGACTGTCTCTTGGCAGTTCAAGACTTGGCTCGGACTGATGTGAATCTGTCGGAACTCAGTAATCTAGTTCAGGACATACAACAAGCACTAGAAGATATGCAGGGTGTCCAAATCAGTTTTGCGTCCCGGTCTTGCAACAAAGTGGCGCACAGACTAGCAAGTCTAGCTTTTGACGATGGCCAGAGGGAGATTTGGCATGGAAATACTCCCAGTTGTATTCTTGACTTGATTACAAAGGATTGTAACCCAATTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0002376 GO:0003674 GO:0003824 GO:0004407 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006476 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009405 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0016575 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044764 GO:0045087 GO:0045892 GO:0045934 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098542 GO:0098732 GO:0140096 GO:1901564 GO:1902459 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000036 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04110 ko04213 ko04330 ko04919 ko05016 ko05034 ko05165 ko05169 ko05200 ko05202 ko05203 ko05220 map04110 map04213 map04330 map04919 map05016 map05034 map05165 map05169 map05200 map05202 map05203 map05220
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

641

Amino Acids

72.55

Weight (kDa)

9.17

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 319 - 413 2.1e-18 zinc-binding in reverse transcriptase
RVT_3 PF13456 549 - 611 1.9e-08 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 982
AasI GACNNNNNNGTC 1 cut(s) 1827
Acc36I ACCTGC 2 cut(s) 982, 1531
Acc65I GGTACC 1 cut(s) 1250
AccB1I GGYRCC 1 cut(s) 1250
AccI GTMKAC 1 cut(s) 253
AciI CCGC 4 cut(s) 41, 206, 356, 1106
AclWI GGATC 4 cut(s) 809, 986, 1025, 1525
AcoI YGGCCR 1 cut(s) 1846
AcsI RAATTY 5 cut(s) 99, 139, 341, 366, 1338
AfaI GTAC 4 cut(s) 296, 662, 760, 1252
AfiI CCNNNNNNNGG 5 cut(s) 474, 603, 871, 1503, 1504
AflIII ACRYGT 1 cut(s) 221
AgeI ACCGGT 1 cut(s) 775
AjnI CCWGG 4 cut(s) 716, 830, 1075, 1435
AjuI GAANNNNNNNTTGG 4 cut(s) 490, 522, 1491, 1523
AleI CACNNNNGTG 1 cut(s) 173
Alw21I GWGCWC 6 cut(s) 651, 783, 999, 1202, 1321, 1647
Alw26I GTCTC 4 cut(s) 316, 788, 1422, 1679
Alw44I GTGCAC 2 cut(s) 779, 1643
AlwI GGATC 4 cut(s) 809, 986, 1025, 1525
AoxI GGCC 2 cut(s) 1065, 1846
ApaLI GTGCAC 2 cut(s) 779, 1643
ApeKI GCWGC 7 cut(s) 65, 178, 203, 988, 1590, 1614, 1625
ApoI RAATTY 5 cut(s) 99, 139, 341, 366, 1338
AsiGI ACCGGT 1 cut(s) 775
Asp700I GAANNNNTTC 1 cut(s) 1460
Asp718I GGTACC 1 cut(s) 1250
AspLEI GCGC 2 cut(s) 16, 1816
AspS9I GGNCC 4 cut(s) 5, 87, 933, 1494
AsuC2I CCSGG 1 cut(s) 1795
AsuHPI GGTGA 5 cut(s) 491, 610, 710, 973, 1040
AsuII TTCGAA 1 cut(s) 1142
AvaII GGWCC 4 cut(s) 5, 87, 933, 1494
AxyI CCTNAGG 1 cut(s) 867
BaeGI GKGCMC 2 cut(s) 783, 1647
BalI TGGCCA 1 cut(s) 1848
BanI GGYRCC 1 cut(s) 1250
BanII GRGCYC 2 cut(s) 1202, 1321
BauI CACGAG 1 cut(s) 323
Bbv12I GWGCWC 6 cut(s) 651, 783, 999, 1202, 1321, 1647
BbvI GCAGC 7 cut(s) 77, 190, 190, 1000, 1602, 1612, 1626
BccI CCATC 5 cut(s) 1151, 1509, 1544, 1656, 1838
BciT130I CCWGG 4 cut(s) 718, 832, 1077, 1437
BclI TGATCA 1 cut(s) 238
BcnI CCSGG 1 cut(s) 1795
BcoDI GTCTC 4 cut(s) 316, 788, 1422, 1679
BfaI CTAG 9 cut(s) 200, 285, 756, 825, 984, 1733, 1757, 1823, 1832
BfoI RGCGCY 1 cut(s) 17
BfuAI ACCTGC 2 cut(s) 982, 1531
BisI GCNGC 7 cut(s) 66, 179, 204, 989, 1591, 1615, 1626
BlsI GCNGC 7 cut(s) 67, 180, 205, 990, 1592, 1616, 1627
BmcAI AGTACT 2 cut(s) 296, 760
Bme1390I CCNGG 5 cut(s) 718, 832, 1077, 1437, 1795
Bme18I GGWCC 4 cut(s) 5, 87, 933, 1494
BmgT120I GGNCC 4 cut(s) 5, 87, 933, 1494
BmiI GGNNCC 4 cut(s) 6, 935, 1252, 1496
BmrFI CCNGG 5 cut(s) 718, 832, 1077, 1437, 1795
BmrI ACTGGG 1 cut(s) 1872
BmsI GCATC 6 cut(s) 676, 691, 1032, 1160, 1470, 1571
BmuI ACTGGG 1 cut(s) 1872
BpmI CTGGAG 2 cut(s) 739, 1120
Bpu10I CCTNAGC 1 cut(s) 387
Bpu14I TTCGAA 1 cut(s) 1142
BpuEI CTTGAG 5 cut(s) 173, 627, 635, 812, 1520
BpuMI CCSGG 1 cut(s) 1795
Bsa29I ATCGAT 1 cut(s) 1513
BsaBI GATNNNNATC 2 cut(s) 243, 1710
BsaJI CCNNGG 3 cut(s) 843, 1076, 1436
BsaWI WCCGGW 1 cut(s) 775
Bsc4I CCNNNNNNNGG 5 cut(s) 474, 603, 871, 1503, 1504
Bse118I RCCGGY 1 cut(s) 775
Bse1I ACTGG 5 cut(s) 17, 879, 980, 1615, 1878
Bse21I CCTNAGG 1 cut(s) 867
Bse3DI GCAATG 2 cut(s) 670, 896
Bse8I GATNNNNATC 2 cut(s) 243, 1710
BseBI CCWGG 4 cut(s) 718, 832, 1077, 1437
BseCI ATCGAT 1 cut(s) 1513
BseDI CCNNGG 3 cut(s) 843, 1076, 1436
BseGI GGATG 8 cut(s) 49, 447, 691, 907, 1016, 1175, 1311, 1555
BseJI GATNNNNATC 2 cut(s) 243, 1710
BseLI CCNNNNNNNGG 5 cut(s) 474, 603, 871, 1503, 1504
BseMI GCAATG 2 cut(s) 670, 896
BseMII CTCAG 7 cut(s) 338, 401, 881, 1215, 1427, 1580, 1738
BseNI ACTGG 5 cut(s) 17, 879, 980, 1615, 1878
BseSI GKGCMC 2 cut(s) 783, 1647
BseXI GCAGC 7 cut(s) 77, 190, 190, 1000, 1602, 1612, 1626
BseYI CCCAGC 2 cut(s) 516, 1502
BsgI GTGCAG 2 cut(s) 84, 197
BshFI GGCC 2 cut(s) 1067, 1848
BshNI GGYRCC 1 cut(s) 1250
BshTI ACCGGT 1 cut(s) 775
BshVI ATCGAT 1 cut(s) 1513
BsiHKAI GWGCWC 6 cut(s) 651, 783, 999, 1202, 1321, 1647
BsiSI CCGG 2 cut(s) 776, 1795
BslFI GGGAC 1 cut(s) 1777
BslI CCNNNNNNNGG 5 cut(s) 474, 603, 871, 1503, 1504
BsmAI GTCTC 4 cut(s) 316, 788, 1422, 1679
BsmFI GGGAC 1 cut(s) 1777
BsmI GAATGC 1 cut(s) 891
BsnI GGCC 2 cut(s) 1067, 1848
Bsp119I TTCGAA 1 cut(s) 1142
Bsp1286I GDGCHC 6 cut(s) 651, 783, 999, 1202, 1321, 1647
Bsp143I GATC 7 cut(s) 238, 740, 814, 978, 1030, 1204, 1530
BspACI CCGC 4 cut(s) 41, 206, 356, 1106
BspANI GGCC 2 cut(s) 1067, 1848
BspCNI CTCAG 7 cut(s) 339, 400, 880, 1214, 1426, 1579, 1737
BspDI ATCGAT 1 cut(s) 1513
BspHI TCATGA 1 cut(s) 1632
BspLI GGNNCC 4 cut(s) 6, 935, 1252, 1496
BspMI ACCTGC 2 cut(s) 982, 1531
BspPI GGATC 4 cut(s) 809, 986, 1025, 1525
BspT104I TTCGAA 1 cut(s) 1142
BspT107I GGYRCC 1 cut(s) 1250
BsrDI GCAATG 2 cut(s) 670, 896
BsrFI RCCGGY 1 cut(s) 775
BsrI ACTGG 5 cut(s) 17, 879, 980, 1615, 1878
BssAI RCCGGY 1 cut(s) 775
BssECI CCNNGG 3 cut(s) 843, 1076, 1436
BssMI GATC 7 cut(s) 238, 740, 814, 978, 1030, 1204, 1530
BssSI CACGAG 1 cut(s) 323
BssT1I CCWWGG 1 cut(s) 843
Bst2BI CACGAG 1 cut(s) 323
Bst2UI CCWGG 4 cut(s) 718, 832, 1077, 1437
Bst4CI ACNGT 5 cut(s) 708, 799, 961, 1269, 1673
Bst6I CTCTTC 2 cut(s) 38, 1139
BstAPI GCANNNNNTGC 1 cut(s) 994
BstBI TTCGAA 1 cut(s) 1142
BstC8I GCNNGC 2 cut(s) 494, 1474
BstDEI CTNAG 9 cut(s) 347, 387, 537, 867, 1201, 1413, 1566, 1598, 1724
BstF5I GGATG 8 cut(s) 49, 447, 691, 907, 1016, 1175, 1311, 1555
BstH2I RGCGCY 1 cut(s) 17
BstHHI GCGC 2 cut(s) 16, 1816
BstKTI GATC 7 cut(s) 241, 743, 817, 981, 1033, 1207, 1533
BstMAI GTCTC 4 cut(s) 316, 788, 1422, 1679
BstMBI GATC 7 cut(s) 238, 740, 814, 978, 1030, 1204, 1530
BstMWI GCNNNNNNNGC 5 cut(s) 593, 994, 1179, 1590, 1832
BstNI CCWGG 4 cut(s) 718, 832, 1077, 1437
BstNSI RCATGY 1 cut(s) 225
BstSCI CCNGG 5 cut(s) 716, 830, 1075, 1435, 1793
BstSLI GKGCMC 2 cut(s) 783, 1647
BstV1I GCAGC 7 cut(s) 77, 190, 190, 1000, 1602, 1612, 1626
BstX2I RGATCY 1 cut(s) 1530
BstYI RGATCY 1 cut(s) 1530
Bsu15I ATCGAT 1 cut(s) 1513
Bsu36I CCTNAGG 1 cut(s) 867
BsuRI GGCC 2 cut(s) 1067, 1848
BsuTUI ATCGAT 1 cut(s) 1513
BtsCI GGATG 8 cut(s) 49, 447, 691, 907, 1016, 1175, 1311, 1555
BtsI GCAGTG 1 cut(s) 160
BtsIMutI CAGTG 3 cut(s) 24, 160, 1608
BveI ACCTGC 2 cut(s) 982, 1531
Cac8I GCNNGC 2 cut(s) 494, 1474
CciI TCATGA 1 cut(s) 1632
CfoI GCGC 2 cut(s) 16, 1816
Cfr10I RCCGGY 1 cut(s) 775
Cfr13I GGNCC 4 cut(s) 5, 87, 933, 1494
ClaI ATCGAT 1 cut(s) 1513
CseI GACGC 1 cut(s) 1779
Csp6I GTAC 4 cut(s) 295, 661, 759, 1251
CspAI ACCGGT 1 cut(s) 775
CviAII CATG 9 cut(s) 222, 236, 484, 542, 589, 1449, 1577, 1633, 1865
CviQI GTAC 4 cut(s) 295, 661, 759, 1251
DdeI CTNAG 9 cut(s) 347, 387, 537, 867, 1201, 1413, 1566, 1598, 1724
DpnI GATC 7 cut(s) 240, 742, 816, 980, 1032, 1206, 1532
DpnII GATC 7 cut(s) 238, 740, 814, 978, 1030, 1204, 1530
DrdI GACNNNNNNGTC 1 cut(s) 1827
DseDI GACNNNNNNGTC 1 cut(s) 1827
EaeI YGGCCR 1 cut(s) 1846
Eam1104I CTCTTC 2 cut(s) 38, 1139
EarI CTCTTC 2 cut(s) 38, 1139
Ecl136II GAGCTC 2 cut(s) 1200, 1319
Eco130I CCWWGG 1 cut(s) 843
Eco24I GRGCYC 2 cut(s) 1202, 1321
Eco47I GGWCC 4 cut(s) 5, 87, 933, 1494
Eco53kI GAGCTC 2 cut(s) 1200, 1319
Eco81I CCTNAGG 1 cut(s) 867
EcoICRI GAGCTC 2 cut(s) 1200, 1319
EcoO109I RGGNCCY 2 cut(s) 87, 1494
EcoRI GAATTC 1 cut(s) 99
EcoRII CCWGG 4 cut(s) 716, 830, 1075, 1435
EcoT14I CCWWGG 1 cut(s) 843
EcoT38I GRGCYC 2 cut(s) 1202, 1321
ErhI CCWWGG 1 cut(s) 843
FaeI CATG 9 cut(s) 225, 239, 487, 545, 592, 1452, 1580, 1636, 1868
FalI AAGNNNNNCTT 4 cut(s) 87, 119, 1819, 1851
FaqI GGGAC 1 cut(s) 1777
FatI CATG 9 cut(s) 221, 235, 483, 541, 588, 1448, 1576, 1632, 1864
FauI CCCGC 1 cut(s) 349
FbaI TGATCA 1 cut(s) 238
FblI GTMKAC 1 cut(s) 253
Fnu4HI GCNGC 7 cut(s) 66, 179, 204, 989, 1591, 1615, 1626
FokI GGATG 8 cut(s) 56, 434, 698, 894, 1003, 1182, 1318, 1562
FriOI GRGCYC 2 cut(s) 1202, 1321
Fsp4HI GCNGC 7 cut(s) 66, 179, 204, 989, 1591, 1615, 1626
FspBI CTAG 9 cut(s) 200, 285, 756, 825, 984, 1733, 1757, 1823, 1832
GlaI GCGC 2 cut(s) 15, 1815
GluI GCNGC 7 cut(s) 66, 179, 204, 989, 1591, 1615, 1626
GsaI CCCAGC 2 cut(s) 520, 1506
GsuI CTGGAG 2 cut(s) 739, 1120
HaeII RGCGCY 1 cut(s) 17
HaeIII GGCC 2 cut(s) 1067, 1848
HapII CCGG 2 cut(s) 776, 1795
HgaI GACGC 1 cut(s) 1779
HhaI GCGC 2 cut(s) 16, 1816
Hin1II CATG 9 cut(s) 225, 239, 487, 545, 592, 1452, 1580, 1636, 1868
Hin6I GCGC 2 cut(s) 14, 1814
HinP1I GCGC 2 cut(s) 14, 1814
HindIII AAGCTT 3 cut(s) 433, 1349, 1538
HinfI GANTC 2 cut(s) 558, 1711
HpaII CCGG 2 cut(s) 776, 1795
HphI GGTGA 5 cut(s) 491, 610, 710, 973, 1040
Hpy166II GTNNAC 4 cut(s) 8, 254, 781, 1645
Hpy188I TCNGA 6 cut(s) 348, 1041, 1204, 1422, 1701, 1720
Hpy188III TCNNGA 9 cut(s) 104, 126, 562, 825, 917, 1633, 1688, 1739, 1889
Hpy8I GTNNAC 4 cut(s) 8, 254, 781, 1645
Hpy99I CGWCG 1 cut(s) 1027
HpyAV CCTTC 6 cut(s) 62, 100, 478, 539, 1057, 1639
HpyCH4III ACNGT 5 cut(s) 708, 799, 961, 1269, 1673
HpyCH4IV ACGT 1 cut(s) 1007
HpyF10VI GCNNNNNNNGC 5 cut(s) 593, 994, 1179, 1590, 1832
HpyF3I CTNAG 9 cut(s) 347, 387, 537, 867, 1201, 1413, 1566, 1598, 1724
HpySE526I ACGT 1 cut(s) 1007
Hsp92II CATG 9 cut(s) 225, 239, 487, 545, 592, 1452, 1580, 1636, 1868
HspAI GCGC 2 cut(s) 14, 1814
KpnI GGTACC 1 cut(s) 1254
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 7 cut(s) 238, 740, 814, 978, 1030, 1204, 1530
LmnI GCTCC 1 cut(s) 680
Lsp1109I GCAGC 7 cut(s) 77, 190, 190, 1000, 1602, 1612, 1626
LweI GCATC 6 cut(s) 676, 691, 1032, 1160, 1470, 1571
MaeI CTAG 9 cut(s) 200, 285, 756, 825, 984, 1733, 1757, 1823, 1832
MaeII ACGT 1 cut(s) 1007
MaeIII GTNAC 5 cut(s) 21, 217, 479, 1263, 1910
MalI GATC 7 cut(s) 240, 742, 816, 980, 1032, 1206, 1532
MboI GATC 7 cut(s) 238, 740, 814, 978, 1030, 1204, 1530
MboII GAAGA 7 cut(s) 25, 413, 463, 1156, 1390, 1415, 1772
MflI RGATCY 1 cut(s) 1530
MhlI GDGCHC 6 cut(s) 651, 783, 999, 1202, 1321, 1647
MlsI TGGCCA 1 cut(s) 1848
MluCI AATT 9 cut(s) 99, 139, 341, 366, 412, 691, 1183, 1338, 1917
MluNI TGGCCA 1 cut(s) 1848
MmeI TCCRAC 3 cut(s) 911, 1489, 1698
Mox20I TGGCCA 1 cut(s) 1848
MroXI GAANNNNTTC 1 cut(s) 1460
MscI TGGCCA 1 cut(s) 1848
MseI TTAA 5 cut(s) 375, 533, 1110, 1296, 1542
MslI CAYNNNNRTG 2 cut(s) 173, 546
Msp20I TGGCCA 1 cut(s) 1848
MspI CCGG 2 cut(s) 776, 1795
MspR9I CCNGG 5 cut(s) 718, 832, 1077, 1437, 1795
Mva1269I GAATGC 1 cut(s) 891
MvaI CCWGG 4 cut(s) 718, 832, 1077, 1437
MwoI GCNNNNNNNGC 5 cut(s) 593, 994, 1179, 1590, 1832
NciI CCSGG 1 cut(s) 1795
NdeII GATC 7 cut(s) 238, 740, 814, 978, 1030, 1204, 1530
NlaIII CATG 9 cut(s) 225, 239, 487, 545, 592, 1452, 1580, 1636, 1868
NlaIV GGNNCC 4 cut(s) 6, 935, 1252, 1496
NmuCI GTSAC 2 cut(s) 217, 479
NspI RCATGY 1 cut(s) 225
NspV TTCGAA 1 cut(s) 1142
OliI CACNNNNGTG 1 cut(s) 173
PagI TCATGA 1 cut(s) 1632
PaqCI CACCTGC 1 cut(s) 982
PciI ACATGT 1 cut(s) 221
PctI GAATGC 1 cut(s) 891
PdmI GAANNNNTTC 1 cut(s) 1460
PfeI GAWTC 2 cut(s) 558, 1711
PfoI TCCNGGA 1 cut(s) 716
PinAI ACCGGT 1 cut(s) 775
PkrI GCNGC 7 cut(s) 67, 180, 205, 990, 1592, 1616, 1627
PpuMI RGGWCCY 2 cut(s) 87, 1494
PscI ACATGT 1 cut(s) 221
Psp124BI GAGCTC 2 cut(s) 1202, 1321
Psp5II RGGWCCY 2 cut(s) 87, 1494
Psp6I CCWGG 4 cut(s) 716, 830, 1075, 1435
PspFI CCCAGC 2 cut(s) 516, 1502
PspGI CCWGG 4 cut(s) 716, 830, 1075, 1435
PspN4I GGNNCC 4 cut(s) 6, 935, 1252, 1496
PspPI GGNCC 4 cut(s) 5, 87, 933, 1494
PspPPI RGGWCCY 2 cut(s) 87, 1494
PsuI RGATCY 1 cut(s) 1530
RsaI GTAC 4 cut(s) 296, 662, 760, 1252
RsaNI GTAC 4 cut(s) 295, 661, 759, 1251
RseI CAYNNNNRTG 2 cut(s) 173, 546
SacI GAGCTC 2 cut(s) 1202, 1321
SaqAI TTAA 5 cut(s) 375, 533, 1110, 1296, 1542
SatI GCNGC 7 cut(s) 66, 179, 204, 989, 1591, 1615, 1626
Sau3AI GATC 7 cut(s) 238, 740, 814, 978, 1030, 1204, 1530
Sau96I GGNCC 4 cut(s) 5, 87, 933, 1494
ScaI AGTACT 2 cut(s) 296, 760
ScrFI CCNGG 5 cut(s) 718, 832, 1077, 1437, 1795
SduI GDGCHC 6 cut(s) 651, 783, 999, 1202, 1321, 1647
SfaNI GCATC 6 cut(s) 676, 691, 1032, 1160, 1470, 1571
SfuI TTCGAA 1 cut(s) 1142
SinI GGWCC 4 cut(s) 5, 87, 933, 1494
SmiMI CAYNNNNRTG 2 cut(s) 173, 546
SmlI CTYRAG 5 cut(s) 188, 642, 650, 791, 1535
SmoI CTYRAG 5 cut(s) 188, 642, 650, 791, 1535
Sse9I AATT 9 cut(s) 99, 139, 341, 366, 412, 691, 1183, 1338, 1917
SsiI CCGC 4 cut(s) 41, 206, 356, 1106
SspMI CTAG 9 cut(s) 200, 285, 756, 825, 984, 1733, 1757, 1823, 1832
SstI GAGCTC 2 cut(s) 1202, 1321
StyD4I CCNGG 5 cut(s) 716, 830, 1075, 1435, 1793
StyI CCWWGG 1 cut(s) 843
TaaI ACNGT 5 cut(s) 708, 799, 961, 1269, 1673
TaiI ACGT 1 cut(s) 1010
TaqI TCGA 4 cut(s) 999, 1022, 1142, 1513
TasI AATT 9 cut(s) 99, 139, 341, 366, 412, 691, 1183, 1338, 1917
TatI WGTACW 2 cut(s) 294, 758
TfiI GAWTC 2 cut(s) 558, 1711
Tru1I TTAA 5 cut(s) 375, 533, 1110, 1296, 1542
Tru9I TTAA 5 cut(s) 375, 533, 1110, 1296, 1542
TscAI CASTG 3 cut(s) 24, 160, 1615
TseFI GTSAC 2 cut(s) 217, 479
TseI GCWGC 7 cut(s) 65, 178, 203, 988, 1590, 1614, 1625
Tsp45I GTSAC 2 cut(s) 217, 479
TspDTI ATGAA 9 cut(s) 129, 246, 425, 558, 839, 1005, 1499, 1621, 1649
TspRI CASTG 3 cut(s) 24, 160, 1615
VneI GTGCAC 2 cut(s) 779, 1643
VpaK11BI GGWCC 4 cut(s) 5, 87, 933, 1494
XapI RAATTY 5 cut(s) 99, 139, 341, 366, 1338
XbaI TCTAGA 1 cut(s) 824
XceI RCATGY 1 cut(s) 225
XmiI GTMKAC 1 cut(s) 253
XmnI GAANNNNTTC 1 cut(s) 1460
XspI CTAG 9 cut(s) 200, 285, 756, 825, 984, 1733, 1757, 1823, 1832
ZrmI AGTACT 2 cut(s) 296, 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.