Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0017025

Physical Location & Seq

Genomic Coordinates Forward (+)

30850896 .. 30855163

Gene Structure 4268 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013391

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCAAATTACTGGCGATACTTTCGTCTGGATGGGAAGCGAGGCCACTATTCAGATATAAAGGATGGCCCAAATATTATCGACATTGAAAATGATGCTGATGGTCCTGATGTAGGGTTTGAATATGGGCATGGGCCTTTTCCTTTTGTAGAAGAGTTTGGATCAACTGATGATGAAGAAGAGTATAATGGTCATGCAAAAAGGGAAGTTGGGATTGGTGATGCAGAAAGGGAAGTTGGGACTGATGGGCCAGATAGGAAAGTTGGGACTGAAGTGCCTGGACATGGGTCAAATAGTCGTGTTAGGCCAACTGGACCAGATAGGGAAGTTAGGACTGATGGGCATAGAGACATGGATAGTGGTGCTGGGCCAACTAGGCCAGATAAGGAAACTAGGCCAATTGGGCCACATAAGGAAACTGGGCAAACTAGTGGTAAAGCTAGACAGAGGGCCCATGGGCCAAATGCAAGGGTGACACTAAAAAGTAAGAAGAGGGCCATGGACAAAGGGAAAAGGCCTGTAGTTGAAGAAGAAGCAGTGAACAAGACTAAGAAACAAACTGTTAGGACCAAGAAAGGATGTGCAAAGAGGTATTTAACAAGGTCTGCTGGGGAGAGTTCTACAGCAACTAACAGGCAGTTTGAGGAGGCTCCAAATGCTAATGACCAGTCTGAAGCTCAACATGAGGAGGTTGAACATGAGGCTGTGCAGCAAGAGGTTCAAAATGAAGAGGTGCTAACTGATAATGTGCAGGAGGAGGTTCAAGCTGAGGAAGCATTCCAGCCTCTAATTCTGTGCCTTTTATGCAGTCACAACAGTCCACCAATTTTAGTTGGCCATTATAATGTAATGCAGTCTAGTCAAGCTCCAGAGAGTTCCTCATCTAGGCCTGGGTTCACACACAGGAGGTTCAAATCCCTTGCACACAGAAAGCCAAAGACTCAGAACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

318

Amino Acids

35.31

Weight (kDa)

6.14

Isoelectric Point (pI)

49.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017025)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000013391
rosa_roxburghii	Rroxscaffold_2G00135960
rosa_samantha	Rh1DG101500 Rh1DG101600 Rh1DG164400 Rh2AG635500 Rh2DG302400 Rh3CG100000 Rh4DG139300 Rh5AG332000 Rh6AG211300 Rh6BG107400
rosa_wichuraiana	Rw0G022730 Rw6G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	843
AclWI	GGATC	1 cut(s)	169
AcoI	YGGCCR	1 cut(s)	835
AcuI	CTGAAG	2 cut(s)	291, 693
AfiI	CCNNNNNNNGG	3 cut(s)	113, 284, 885
AgsI	TTSAA	7 cut(s)	89, 122, 527, 695, 722, 764, 913
AhlI	ACTAGT	1 cut(s)	428
AjnI	CCWGG	2 cut(s)	277, 889
AjuI	GAANNNNNNNTTGG	4 cut(s)	198, 219, 230, 251
AluBI	AGCT	4 cut(s)	440, 677, 767, 866
AluI	AGCT	4 cut(s)	440, 677, 767, 866
Alw26I	GTCTC	1 cut(s)	342
AlwI	GGATC	1 cut(s)	169
ApaI	GGGCCC	1 cut(s)	454
ApeKI	GCWGC	1 cut(s)	709
AsuHPI	GGTGA	2 cut(s)	230, 484
AvaII	GGWCC	3 cut(s)	104, 314, 567
BaeGI	GKGCMC	1 cut(s)	454
BaeI	ACNNNNGTAYC	2 cut(s)	10, 43
BalI	TGGCCA	1 cut(s)	837
BanII	GRGCYC	1 cut(s)	454
BbvCI	CCTCAGC	1 cut(s)	768
BbvI	GCAGC	1 cut(s)	721
BccI	CCATC	5 cut(s)	26, 59, 95, 239, 332
BciT130I	CCWGG	2 cut(s)	279, 891
BcoDI	GTCTC	1 cut(s)	342
BcuI	ACTAGT	1 cut(s)	428
BfaI	CTAG	6 cut(s)	375, 393, 429, 441, 858, 885
BfmI	CTRYAG	2 cut(s)	519, 621
BglI	GCCNNNNNGGC	2 cut(s)	376, 403
BisI	GCNGC	1 cut(s)	710
BlsI	GCNGC	1 cut(s)	711
Bme1390I	CCNGG	2 cut(s)	279, 891
Bme18I	GGWCC	3 cut(s)	104, 314, 567
BmiI	GGNNCC	2 cut(s)	452, 651
BmrFI	CCNGG	2 cut(s)	279, 891
BmrI	ACTGGG	1 cut(s)	429
BmsI	GCATC	2 cut(s)	85, 211
BmuI	ACTGGG	1 cut(s)	429
BoxI	GACNNNNGTC	1 cut(s)	286
BplI	GAGNNNNNCTC	2 cut(s)	863, 895
BpmI	CTGGAG	1 cut(s)	852
Bpu10I	CCTNAGC	1 cut(s)	768
BsaJI	CCNNGG	3 cut(s)	454, 498, 890
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 284, 885
Bse1I	ACTGG	4 cut(s)	17, 316, 424, 667
BseBI	CCWGG	2 cut(s)	279, 891
BseDI	CCNNGG	3 cut(s)	454, 498, 890
BseGI	GGATG	3 cut(s)	37, 70, 584
BseLI	CCNNNNNNNGG	3 cut(s)	113, 284, 885
BseMII	CTCAG	1 cut(s)	759
BseNI	ACTGG	4 cut(s)	17, 316, 424, 667
BseRI	GAGGAG	3 cut(s)	659, 701, 770
BseSI	GKGCMC	1 cut(s)	454
BseXI	GCAGC	1 cut(s)	721
BseYI	CCCAGC	2 cut(s)	365, 608
BsgI	GTGCAG	2 cut(s)	728, 770
BslFI	GGGAC	2 cut(s)	253, 280
BslI	CCNNNNNNNGG	3 cut(s)	113, 284, 885
BsmAI	GTCTC	1 cut(s)	342
BsmFI	GGGAC	2 cut(s)	253, 280
BsmI	GAATGC	1 cut(s)	776
Bsp120I	GGGCCC	1 cut(s)	450
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp143I	GATC	1 cut(s)	161
Bsp19I	CCATGG	2 cut(s)	454, 498
BspCNI	CTCAG	1 cut(s)	760
BspLI	GGNNCC	2 cut(s)	452, 651
BspPI	GGATC	1 cut(s)	169
BsrI	ACTGG	4 cut(s)	17, 316, 424, 667
BssECI	CCNNGG	3 cut(s)	454, 498, 890
BssMI	GATC	1 cut(s)	161
BssT1I	CCWWGG	2 cut(s)	454, 498
Bst2UI	CCWGG	2 cut(s)	279, 891
Bst4CI	ACNGT	2 cut(s)	562, 818
Bst6I	CTCTTC	4 cut(s)	147, 174, 485, 723
BstDEI	CTNAG	3 cut(s)	549, 768, 942
BstDSI	CCRYGG	2 cut(s)	454, 498
BstENI	CCTNNNNNAGG	2 cut(s)	111, 883
BstF5I	GGATG	3 cut(s)	37, 70, 584
BstKTI	GATC	1 cut(s)	164
BstMAI	GTCTC	1 cut(s)	342
BstMBI	GATC	1 cut(s)	161
BstMWI	GCNNNNNNNGC	5 cut(s)	376, 403, 656, 773, 804
BstNI	CCWGG	2 cut(s)	279, 891
BstPAI	GACNNNNGTC	1 cut(s)	286
BstSCI	CCNGG	2 cut(s)	277, 889
BstSFI	CTRYAG	2 cut(s)	519, 621
BstSLI	GKGCMC	1 cut(s)	454
BstV1I	GCAGC	1 cut(s)	721
BtgI	CCRYGG	2 cut(s)	454, 498
BtsCI	GGATG	3 cut(s)	37, 70, 584
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	1 cut(s)	543
CviAII	CATG	9 cut(s)	131, 194, 284, 352, 455, 499, 683, 698, 951
DdeI	CTNAG	3 cut(s)	549, 768, 942
DpnI	GATC	1 cut(s)	163
DpnII	GATC	1 cut(s)	161
EaeI	YGGCCR	1 cut(s)	835
Eam1104I	CTCTTC	4 cut(s)	147, 174, 485, 723
EarI	CTCTTC	4 cut(s)	147, 174, 485, 723
Eco130I	CCWWGG	2 cut(s)	454, 498
Eco147I	AGGCCT	2 cut(s)	517, 889
Eco24I	GRGCYC	1 cut(s)	454
Eco47I	GGWCC	3 cut(s)	104, 314, 567
Eco57I	CTGAAG	2 cut(s)	291, 693
EcoNI	CCTNNNNNAGG	2 cut(s)	111, 883
EcoO109I	RGGNCCY	1 cut(s)	450
EcoRII	CCWGG	2 cut(s)	277, 889
EcoT14I	CCWWGG	2 cut(s)	454, 498
EcoT38I	GRGCYC	1 cut(s)	454
ErhI	CCWWGG	2 cut(s)	454, 498
FaeI	CATG	9 cut(s)	134, 197, 287, 355, 458, 502, 686, 701, 954
FaqI	GGGAC	2 cut(s)	253, 280
FatI	CATG	9 cut(s)	130, 193, 283, 351, 454, 498, 682, 697, 950
Fnu4HI	GCNGC	1 cut(s)	710
FokI	GGATG	3 cut(s)	44, 77, 591
FriOI	GRGCYC	1 cut(s)	454
Fsp4HI	GCNGC	1 cut(s)	710
FspBI	CTAG	6 cut(s)	375, 393, 429, 441, 858, 885
GluI	GCNGC	1 cut(s)	710
GsaI	CCCAGC	2 cut(s)	369, 612
GsuI	CTGGAG	1 cut(s)	852
Hin1II	CATG	9 cut(s)	134, 197, 287, 355, 458, 502, 686, 701, 954
HinfI	GANTC	1 cut(s)	940
HphI	GGTGA	2 cut(s)	230, 484
Hpy166II	GTNNAC	3 cut(s)	541, 821, 897
Hpy188I	TCNGA	3 cut(s)	55, 673, 945
Hpy188III	TCNNGA	3 cut(s)	29, 107, 869
Hpy8I	GTNNAC	3 cut(s)	541, 821, 897
HpyCH4III	ACNGT	2 cut(s)	562, 818
HpyCH4V	TGCA	9 cut(s)	197, 224, 467, 584, 709, 751, 807, 853, 923
HpyF10VI	GCNNNNNNNGC	5 cut(s)	376, 403, 656, 773, 804
HpyF3I	CTNAG	3 cut(s)	549, 768, 942
Hsp92II	CATG	9 cut(s)	134, 197, 287, 355, 458, 502, 686, 701, 954
Kzo9I	GATC	1 cut(s)	161
LmnI	GCTCC	2 cut(s)	655, 871
Lsp1109I	GCAGC	1 cut(s)	721
LweI	GCATC	2 cut(s)	85, 211
MaeI	CTAG	6 cut(s)	375, 393, 429, 441, 858, 885
MaeIII	GTNAC	2 cut(s)	472, 809
MalI	GATC	1 cut(s)	163
MboI	GATC	1 cut(s)	161
MboII	GAAGA	7 cut(s)	164, 188, 191, 502, 539, 542, 740
MfeI	CAATTG	1 cut(s)	399
MhlI	GDGCHC	1 cut(s)	454
MlsI	TGGCCA	1 cut(s)	837
MluCI	AATT	4 cut(s)	7, 399, 789, 825
MluNI	TGGCCA	1 cut(s)	837
MlyI	GAGTC	1 cut(s)	934
Mox20I	TGGCCA	1 cut(s)	837
MscI	TGGCCA	1 cut(s)	837
MseI	TTAA	1 cut(s)	596
MslI	CAYNNNNRTG	1 cut(s)	843
Msp20I	TGGCCA	1 cut(s)	837
MspR9I	CCNGG	2 cut(s)	279, 891
MunI	CAATTG	1 cut(s)	399
Mva1269I	GAATGC	1 cut(s)	776
MvaI	CCWGG	2 cut(s)	279, 891
MwoI	GCNNNNNNNGC	5 cut(s)	376, 403, 656, 773, 804
NcoI	CCATGG	2 cut(s)	454, 498
NdeII	GATC	1 cut(s)	161
NlaIII	CATG	9 cut(s)	134, 197, 287, 355, 458, 502, 686, 701, 954
NlaIV	GGNNCC	2 cut(s)	452, 651
NmuCI	GTSAC	2 cut(s)	472, 809
PceI	AGGCCT	2 cut(s)	517, 889
PctI	GAATGC	1 cut(s)	776
PkrI	GCNGC	1 cut(s)	711
PleI	GAGTC	1 cut(s)	934
PpsI	GAGTC	1 cut(s)	934
PshAI	GACNNNNGTC	1 cut(s)	286
PsiI	TTATAA	1 cut(s)	843
Psp6I	CCWGG	2 cut(s)	277, 889
PspFI	CCCAGC	2 cut(s)	365, 608
PspGI	CCWGG	2 cut(s)	277, 889
PspN4I	GGNNCC	2 cut(s)	452, 651
PspOMI	GGGCCC	1 cut(s)	450
RseI	CAYNNNNRTG	1 cut(s)	843
SaqAI	TTAA	1 cut(s)	596
SatI	GCNGC	1 cut(s)	710
Sau3AI	GATC	1 cut(s)	161
SchI	GAGTC	1 cut(s)	934
ScrFI	CCNGG	2 cut(s)	279, 891
SduI	GDGCHC	1 cut(s)	454
SfaNI	GCATC	2 cut(s)	85, 211
SfcI	CTRYAG	2 cut(s)	519, 621
SfiI	GGCCNNNNNGGCC	2 cut(s)	376, 403
SinI	GGWCC	3 cut(s)	104, 314, 567
SmiMI	CAYNNNNRTG	1 cut(s)	843
SpeI	ACTAGT	1 cut(s)	428
Sse9I	AATT	4 cut(s)	7, 399, 789, 825
SseBI	AGGCCT	2 cut(s)	517, 889
SspI	AATATT	1 cut(s)	76
SspMI	CTAG	6 cut(s)	375, 393, 429, 441, 858, 885
StuI	AGGCCT	2 cut(s)	517, 889
StyD4I	CCNGG	2 cut(s)	277, 889
StyI	CCWWGG	2 cut(s)	454, 498
TaaI	ACNGT	2 cut(s)	562, 818
TaqI	TCGA	1 cut(s)	81
TasI	AATT	4 cut(s)	7, 399, 789, 825
Tru1I	TTAA	1 cut(s)	596
Tru9I	TTAA	1 cut(s)	596
TscAI	CASTG	1 cut(s)	543
TseFI	GTSAC	2 cut(s)	472, 809
TseI	GCWGC	1 cut(s)	709
Tsp45I	GTSAC	2 cut(s)	472, 809
TspDTI	ATGAA	2 cut(s)	189, 741
TspRI	CASTG	1 cut(s)	543
VpaK11BI	GGWCC	3 cut(s)	104, 314, 567
XagI	CCTNNNNNAGG	2 cut(s)	111, 883
XspI	CTAG	6 cut(s)	375, 393, 429, 441, 858, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.